Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS12760

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS12755 and QEN71_RS12760 are separated by 422 nucleotidesQEN71_RS12760 and QEN71_RS12765 are separated by 73 nucleotides QEN71_RS12755: QEN71_RS12755 - ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA, at 2,852,665 to 2,853,567 _RS12755 QEN71_RS12760: QEN71_RS12760 - ectoine hydrolase DoeA, at 2,853,990 to 2,855,210 _RS12760 QEN71_RS12765: QEN71_RS12765 - alcohol dehydrogenase family protein, at 2,855,284 to 2,856,378 _RS12765 Position (kb) 2853 2854 2855 2856Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2853.634 kb on - strandat 2853.783 kb on + strandat 2853.784 kb on - strandat 2853.787 kb on + strandat 2853.787 kb on + strandat 2853.834 kb on - strandat 2853.859 kb on - strandat 2853.890 kb on - strandat 2853.930 kb on + strandat 2853.959 kb on - strandat 2854.161 kb on + strand, within QEN71_RS12760at 2854.180 kb on - strand, within QEN71_RS12760at 2854.287 kb on - strand, within QEN71_RS12760at 2854.308 kb on + strand, within QEN71_RS12760at 2854.308 kb on + strand, within QEN71_RS12760at 2854.410 kb on + strand, within QEN71_RS12760at 2854.410 kb on + strand, within QEN71_RS12760at 2854.530 kb on + strand, within QEN71_RS12760at 2854.629 kb on + strand, within QEN71_RS12760at 2854.630 kb on - strand, within QEN71_RS12760at 2854.797 kb on + strand, within QEN71_RS12760at 2854.798 kb on - strand, within QEN71_RS12760at 2854.798 kb on - strand, within QEN71_RS12760at 2854.824 kb on + strand, within QEN71_RS12760at 2854.916 kb on + strand, within QEN71_RS12760at 2854.916 kb on + strand, within QEN71_RS12760at 2854.916 kb on + strand, within QEN71_RS12760at 2854.916 kb on + strand, within QEN71_RS12760at 2855.141 kb on + strandat 2855.142 kb on - strandat 2855.271 kb on + strandat 2855.272 kb on - strandat 2855.272 kb on - strandat 2855.348 kb on - strandat 2855.620 kb on + strand, within QEN71_RS12765at 2855.656 kb on + strand, within QEN71_RS12765at 2855.657 kb on - strand, within QEN71_RS12765at 2855.737 kb on + strand, within QEN71_RS12765at 2855.738 kb on - strand, within QEN71_RS12765at 2855.738 kb on - strand, within QEN71_RS12765at 2855.774 kb on - strand, within QEN71_RS12765at 2856.098 kb on - strand, within QEN71_RS12765at 2856.100 kb on - strand, within QEN71_RS12765

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,853,634 - +0.6
2,853,783 + -0.0
2,853,784 - -0.7
2,853,787 + +0.2
2,853,787 + +0.1
2,853,834 - +0.8
2,853,859 - -1.2
2,853,890 - -0.2
2,853,930 + -0.2
2,853,959 - -2.0
2,854,161 + QEN71_RS12760 0.14 +0.8
2,854,180 - QEN71_RS12760 0.16 -1.3
2,854,287 - QEN71_RS12760 0.24 +0.0
2,854,308 + QEN71_RS12760 0.26 +0.1
2,854,308 + QEN71_RS12760 0.26 +3.0
2,854,410 + QEN71_RS12760 0.34 +0.3
2,854,410 + QEN71_RS12760 0.34 +0.5
2,854,530 + QEN71_RS12760 0.44 -1.0
2,854,629 + QEN71_RS12760 0.52 -1.3
2,854,630 - QEN71_RS12760 0.52 -1.9
2,854,797 + QEN71_RS12760 0.66 -0.5
2,854,798 - QEN71_RS12760 0.66 +0.4
2,854,798 - QEN71_RS12760 0.66 +0.3
2,854,824 + QEN71_RS12760 0.68 -0.4
2,854,916 + QEN71_RS12760 0.76 -0.1
2,854,916 + QEN71_RS12760 0.76 -0.1
2,854,916 + QEN71_RS12760 0.76 +0.2
2,854,916 + QEN71_RS12760 0.76 +0.5
2,855,141 + -0.6
2,855,142 - -0.4
2,855,271 + -0.2
2,855,272 - +0.2
2,855,272 - +0.5
2,855,348 - +0.2
2,855,620 + QEN71_RS12765 0.31 +0.1
2,855,656 + QEN71_RS12765 0.34 +0.2
2,855,657 - QEN71_RS12765 0.34 +0.4
2,855,737 + QEN71_RS12765 0.41 +0.2
2,855,738 - QEN71_RS12765 0.41 +0.4
2,855,738 - QEN71_RS12765 0.41 -0.3
2,855,774 - QEN71_RS12765 0.45 +1.5
2,856,098 - QEN71_RS12765 0.74 -0.5
2,856,100 - QEN71_RS12765 0.75 +0.4

Or see this region's nucleotide sequence