Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS10190

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS10180 and QEN71_RS10185 are separated by 85 nucleotidesQEN71_RS10185 and QEN71_RS10190 overlap by 1 nucleotidesQEN71_RS10190 and QEN71_RS10195 overlap by 8 nucleotidesQEN71_RS10195 and QEN71_RS10200 overlap by 1 nucleotides QEN71_RS10180: QEN71_RS10180 - ABC transporter substrate-binding protein, at 2,269,722 to 2,271,464 _RS10180 QEN71_RS10185: QEN71_RS10185 - DUF2160 domain-containing protein, at 2,271,550 to 2,271,831 _RS10185 QEN71_RS10190: QEN71_RS10190 - carbohydrate ABC transporter permease, at 2,271,831 to 2,272,643 _RS10190 QEN71_RS10195: QEN71_RS10195 - sugar ABC transporter permease, at 2,272,636 to 2,273,529 _RS10195 QEN71_RS10200: QEN71_RS10200 - ABC transporter ATP-binding protein, at 2,273,529 to 2,274,638 _RS10200 Position (kb) 2271 2272 2273Strain fitness (log2 ratio) -3 -2 -1 0 1at 2271.014 kb on - strand, within QEN71_RS10180at 2271.040 kb on + strand, within QEN71_RS10180at 2271.089 kb on - strand, within QEN71_RS10180at 2271.214 kb on + strand, within QEN71_RS10180at 2271.214 kb on + strand, within QEN71_RS10180at 2271.215 kb on - strand, within QEN71_RS10180at 2271.215 kb on - strand, within QEN71_RS10180at 2271.250 kb on - strand, within QEN71_RS10180at 2271.250 kb on - strand, within QEN71_RS10180at 2271.250 kb on - strand, within QEN71_RS10180at 2271.491 kb on - strandat 2271.552 kb on - strandat 2271.816 kb on - strandat 2271.884 kb on + strandat 2272.218 kb on - strand, within QEN71_RS10190at 2272.241 kb on - strand, within QEN71_RS10190at 2272.426 kb on + strand, within QEN71_RS10190at 2272.427 kb on - strand, within QEN71_RS10190at 2272.597 kb on + strandat 2272.608 kb on + strandat 2272.698 kb on - strandat 2272.796 kb on + strand, within QEN71_RS10195at 2272.934 kb on + strand, within QEN71_RS10195at 2272.983 kb on - strand, within QEN71_RS10195at 2273.016 kb on - strand, within QEN71_RS10195at 2273.099 kb on + strand, within QEN71_RS10195at 2273.099 kb on + strand, within QEN71_RS10195at 2273.106 kb on - strand, within QEN71_RS10195at 2273.185 kb on + strand, within QEN71_RS10195at 2273.185 kb on + strand, within QEN71_RS10195at 2273.429 kb on + strand, within QEN71_RS10195at 2273.482 kb on + strandat 2273.640 kb on - strand, within QEN71_RS10200

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,271,014 - QEN71_RS10180 0.74 -1.0
2,271,040 + QEN71_RS10180 0.76 -0.2
2,271,089 - QEN71_RS10180 0.78 +0.1
2,271,214 + QEN71_RS10180 0.86 -0.5
2,271,214 + QEN71_RS10180 0.86 -1.0
2,271,215 - QEN71_RS10180 0.86 -0.9
2,271,215 - QEN71_RS10180 0.86 -2.6
2,271,250 - QEN71_RS10180 0.88 -0.2
2,271,250 - QEN71_RS10180 0.88 +0.9
2,271,250 - QEN71_RS10180 0.88 -0.1
2,271,491 - -1.2
2,271,552 - +0.2
2,271,816 - +0.3
2,271,884 + +0.1
2,272,218 - QEN71_RS10190 0.48 +0.1
2,272,241 - QEN71_RS10190 0.50 +0.5
2,272,426 + QEN71_RS10190 0.73 +0.2
2,272,427 - QEN71_RS10190 0.73 +1.0
2,272,597 + -0.5
2,272,608 + +0.4
2,272,698 - -0.3
2,272,796 + QEN71_RS10195 0.18 -3.6
2,272,934 + QEN71_RS10195 0.33 +0.0
2,272,983 - QEN71_RS10195 0.39 -0.2
2,273,016 - QEN71_RS10195 0.43 -0.4
2,273,099 + QEN71_RS10195 0.52 +0.4
2,273,099 + QEN71_RS10195 0.52 +0.0
2,273,106 - QEN71_RS10195 0.53 +0.4
2,273,185 + QEN71_RS10195 0.61 +0.6
2,273,185 + QEN71_RS10195 0.61 +0.6
2,273,429 + QEN71_RS10195 0.89 -0.8
2,273,482 + -0.5
2,273,640 - QEN71_RS10200 0.10 -0.7

Or see this region's nucleotide sequence