Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS02680

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS02675 and QEN71_RS02680 are separated by 26 nucleotidesQEN71_RS02680 and QEN71_RS02685 are separated by 132 nucleotidesQEN71_RS02685 and QEN71_RS02690 are separated by 57 nucleotides QEN71_RS02675: QEN71_RS02675 - kynureninase, at 601,737 to 602,987 _RS02675 QEN71_RS02680: QEN71_RS02680 - arylformamidase, at 603,014 to 603,661 _RS02680 QEN71_RS02685: QEN71_RS02685 - Lrp/AsnC family transcriptional regulator, at 603,794 to 604,300 _RS02685 QEN71_RS02690: QEN71_RS02690 - flavin reductase family protein, at 604,358 to 604,870 _RS02690 Position (kb) 603 604Strain fitness (log2 ratio) -2 -1 0 1 2at 602.182 kb on + strand, within QEN71_RS02675at 602.182 kb on + strand, within QEN71_RS02675at 602.183 kb on - strand, within QEN71_RS02675at 602.183 kb on - strand, within QEN71_RS02675at 602.183 kb on - strand, within QEN71_RS02675at 602.183 kb on - strand, within QEN71_RS02675at 602.183 kb on - strand, within QEN71_RS02675at 602.183 kb on - strand, within QEN71_RS02675at 602.305 kb on + strand, within QEN71_RS02675at 602.305 kb on + strand, within QEN71_RS02675at 602.305 kb on + strand, within QEN71_RS02675at 602.305 kb on + strand, within QEN71_RS02675at 602.305 kb on + strand, within QEN71_RS02675at 602.305 kb on + strand, within QEN71_RS02675at 602.306 kb on - strand, within QEN71_RS02675at 602.306 kb on - strand, within QEN71_RS02675at 602.306 kb on - strand, within QEN71_RS02675at 602.306 kb on - strand, within QEN71_RS02675at 602.306 kb on - strand, within QEN71_RS02675at 602.306 kb on - strand, within QEN71_RS02675at 602.306 kb on - strand, within QEN71_RS02675at 602.306 kb on - strand, within QEN71_RS02675at 602.306 kb on - strand, within QEN71_RS02675at 602.306 kb on - strand, within QEN71_RS02675at 602.306 kb on - strand, within QEN71_RS02675at 602.306 kb on - strand, within QEN71_RS02675at 602.306 kb on - strand, within QEN71_RS02675at 602.306 kb on - strand, within QEN71_RS02675at 602.311 kb on + strand, within QEN71_RS02675at 602.311 kb on + strand, within QEN71_RS02675at 602.311 kb on + strand, within QEN71_RS02675at 602.312 kb on - strand, within QEN71_RS02675at 602.312 kb on - strand, within QEN71_RS02675at 602.312 kb on - strand, within QEN71_RS02675at 602.449 kb on + strand, within QEN71_RS02675at 602.449 kb on + strand, within QEN71_RS02675at 602.449 kb on + strand, within QEN71_RS02675at 602.449 kb on + strand, within QEN71_RS02675at 602.449 kb on + strand, within QEN71_RS02675at 602.450 kb on - strand, within QEN71_RS02675at 602.450 kb on - strand, within QEN71_RS02675at 602.450 kb on - strand, within QEN71_RS02675at 602.461 kb on + strand, within QEN71_RS02675at 602.461 kb on + strand, within QEN71_RS02675at 602.461 kb on + strand, within QEN71_RS02675at 602.462 kb on - strand, within QEN71_RS02675at 602.462 kb on - strand, within QEN71_RS02675at 602.548 kb on + strand, within QEN71_RS02675at 602.587 kb on + strand, within QEN71_RS02675at 602.587 kb on + strand, within QEN71_RS02675at 602.587 kb on + strand, within QEN71_RS02675at 602.587 kb on + strand, within QEN71_RS02675at 602.587 kb on + strand, within QEN71_RS02675at 602.587 kb on + strand, within QEN71_RS02675at 602.587 kb on + strand, within QEN71_RS02675at 602.587 kb on + strand, within QEN71_RS02675at 602.587 kb on + strand, within QEN71_RS02675at 602.587 kb on + strand, within QEN71_RS02675at 602.703 kb on - strand, within QEN71_RS02675at 602.703 kb on - strand, within QEN71_RS02675at 602.703 kb on - strand, within QEN71_RS02675at 602.792 kb on + strand, within QEN71_RS02675at 602.793 kb on - strand, within QEN71_RS02675at 602.835 kb on + strand, within QEN71_RS02675at 602.896 kb on + strandat 602.896 kb on + strandat 602.896 kb on + strandat 602.896 kb on + strandat 602.896 kb on + strandat 602.896 kb on + strandat 602.896 kb on + strandat 602.897 kb on - strandat 602.897 kb on - strandat 602.897 kb on - strandat 602.897 kb on - strandat 603.112 kb on - strand, within QEN71_RS02680at 603.313 kb on + strand, within QEN71_RS02680at 603.313 kb on + strand, within QEN71_RS02680at 603.313 kb on + strand, within QEN71_RS02680at 603.313 kb on + strand, within QEN71_RS02680at 603.313 kb on + strand, within QEN71_RS02680at 603.314 kb on - strand, within QEN71_RS02680at 603.314 kb on - strand, within QEN71_RS02680at 603.314 kb on - strand, within QEN71_RS02680at 603.314 kb on - strand, within QEN71_RS02680at 603.314 kb on - strand, within QEN71_RS02680at 603.314 kb on - strand, within QEN71_RS02680at 603.314 kb on - strand, within QEN71_RS02680at 603.314 kb on - strand, within QEN71_RS02680at 603.314 kb on - strand, within QEN71_RS02680at 603.330 kb on + strand, within QEN71_RS02680at 603.330 kb on + strand, within QEN71_RS02680at 603.330 kb on + strand, within QEN71_RS02680at 603.331 kb on - strand, within QEN71_RS02680at 603.331 kb on - strand, within QEN71_RS02680at 603.331 kb on - strand, within QEN71_RS02680at 603.331 kb on - strand, within QEN71_RS02680at 603.331 kb on - strand, within QEN71_RS02680at 603.331 kb on - strand, within QEN71_RS02680at 603.331 kb on - strand, within QEN71_RS02680at 603.331 kb on - strand, within QEN71_RS02680at 603.331 kb on - strand, within QEN71_RS02680at 603.374 kb on + strand, within QEN71_RS02680at 603.374 kb on + strand, within QEN71_RS02680at 603.374 kb on + strand, within QEN71_RS02680at 603.375 kb on - strand, within QEN71_RS02680at 603.375 kb on - strand, within QEN71_RS02680at 603.375 kb on - strand, within QEN71_RS02680at 603.375 kb on - strand, within QEN71_RS02680at 603.441 kb on + strand, within QEN71_RS02680at 603.441 kb on + strand, within QEN71_RS02680at 603.441 kb on + strand, within QEN71_RS02680at 603.441 kb on + strand, within QEN71_RS02680at 603.441 kb on + strand, within QEN71_RS02680at 603.442 kb on - strand, within QEN71_RS02680at 603.442 kb on - strand, within QEN71_RS02680at 603.442 kb on - strand, within QEN71_RS02680at 603.442 kb on - strand, within QEN71_RS02680at 603.442 kb on - strand, within QEN71_RS02680at 603.442 kb on - strand, within QEN71_RS02680at 603.487 kb on - strand, within QEN71_RS02680at 603.487 kb on - strand, within QEN71_RS02680at 603.686 kb on + strandat 603.686 kb on + strandat 603.686 kb on + strandat 603.686 kb on + strandat 603.686 kb on + strandat 603.686 kb on + strandat 603.687 kb on + strandat 603.687 kb on - strandat 603.687 kb on - strandat 603.687 kb on - strandat 603.687 kb on - strandat 603.687 kb on - strandat 603.687 kb on - strandat 603.687 kb on - strandat 603.687 kb on - strandat 603.699 kb on + strandat 603.699 kb on + strandat 603.727 kb on + strandat 603.761 kb on + strandat 603.762 kb on - strandat 603.829 kb on + strandat 604.014 kb on + strand, within QEN71_RS02685at 604.014 kb on + strand, within QEN71_RS02685at 604.014 kb on + strand, within QEN71_RS02685at 604.015 kb on - strand, within QEN71_RS02685at 604.015 kb on - strand, within QEN71_RS02685at 604.015 kb on - strand, within QEN71_RS02685at 604.118 kb on + strand, within QEN71_RS02685at 604.118 kb on + strand, within QEN71_RS02685at 604.118 kb on + strand, within QEN71_RS02685at 604.118 kb on + strand, within QEN71_RS02685at 604.119 kb on - strand, within QEN71_RS02685at 604.119 kb on - strand, within QEN71_RS02685at 604.119 kb on - strand, within QEN71_RS02685at 604.119 kb on - strand, within QEN71_RS02685at 604.119 kb on - strand, within QEN71_RS02685at 604.119 kb on - strand, within QEN71_RS02685at 604.119 kb on - strand, within QEN71_RS02685at 604.155 kb on - strand, within QEN71_RS02685at 604.181 kb on + strand, within QEN71_RS02685at 604.181 kb on + strand, within QEN71_RS02685at 604.181 kb on + strand, within QEN71_RS02685at 604.181 kb on + strand, within QEN71_RS02685at 604.181 kb on + strand, within QEN71_RS02685at 604.181 kb on + strand, within QEN71_RS02685at 604.182 kb on - strand, within QEN71_RS02685at 604.182 kb on - strand, within QEN71_RS02685at 604.182 kb on - strand, within QEN71_RS02685at 604.486 kb on - strand, within QEN71_RS02690at 604.532 kb on + strand, within QEN71_RS02690at 604.647 kb on + strand, within QEN71_RS02690at 604.647 kb on + strand, within QEN71_RS02690at 604.647 kb on + strand, within QEN71_RS02690at 604.647 kb on + strand, within QEN71_RS02690at 604.647 kb on + strand, within QEN71_RS02690at 604.647 kb on + strand, within QEN71_RS02690at 604.647 kb on + strand, within QEN71_RS02690at 604.647 kb on + strand, within QEN71_RS02690at 604.647 kb on + strand, within QEN71_RS02690at 604.647 kb on + strand, within QEN71_RS02690at 604.647 kb on + strand, within QEN71_RS02690at 604.647 kb on + strand, within QEN71_RS02690at 604.647 kb on + strand, within QEN71_RS02690at 604.647 kb on + strand, within QEN71_RS02690at 604.647 kb on + strand, within QEN71_RS02690at 604.647 kb on + strand, within QEN71_RS02690at 604.648 kb on - strand, within QEN71_RS02690at 604.648 kb on - strand, within QEN71_RS02690at 604.648 kb on - strand, within QEN71_RS02690at 604.648 kb on - strand, within QEN71_RS02690at 604.648 kb on - strand, within QEN71_RS02690at 604.648 kb on - strand, within QEN71_RS02690at 604.648 kb on - strand, within QEN71_RS02690at 604.648 kb on - strand, within QEN71_RS02690at 604.648 kb on - strand, within QEN71_RS02690at 604.648 kb on - strand, within QEN71_RS02690at 604.648 kb on - strand, within QEN71_RS02690at 604.648 kb on - strand, within QEN71_RS02690at 604.648 kb on - strand, within QEN71_RS02690

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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602,182 + QEN71_RS02675 0.36 +0.3
602,182 + QEN71_RS02675 0.36 +0.2
602,183 - QEN71_RS02675 0.36 +0.4
602,183 - QEN71_RS02675 0.36 -0.6
602,183 - QEN71_RS02675 0.36 -0.8
602,183 - QEN71_RS02675 0.36 +1.9
602,183 - QEN71_RS02675 0.36 -0.4
602,183 - QEN71_RS02675 0.36 +1.2
602,305 + QEN71_RS02675 0.45 -1.1
602,305 + QEN71_RS02675 0.45 +1.2
602,305 + QEN71_RS02675 0.45 +0.3
602,305 + QEN71_RS02675 0.45 -1.3
602,305 + QEN71_RS02675 0.45 +1.3
602,305 + QEN71_RS02675 0.45 -1.1
602,306 - QEN71_RS02675 0.45 -0.7
602,306 - QEN71_RS02675 0.45 -0.1
602,306 - QEN71_RS02675 0.45 +0.3
602,306 - QEN71_RS02675 0.45 +0.0
602,306 - QEN71_RS02675 0.45 -0.1
602,306 - QEN71_RS02675 0.45 +0.3
602,306 - QEN71_RS02675 0.45 -0.3
602,306 - QEN71_RS02675 0.45 -0.9
602,306 - QEN71_RS02675 0.45 -0.8
602,306 - QEN71_RS02675 0.45 -0.6
602,306 - QEN71_RS02675 0.45 +0.3
602,306 - QEN71_RS02675 0.45 +0.2
602,306 - QEN71_RS02675 0.45 +0.9
602,306 - QEN71_RS02675 0.45 +0.3
602,311 + QEN71_RS02675 0.46 +0.7
602,311 + QEN71_RS02675 0.46 +0.4
602,311 + QEN71_RS02675 0.46 +0.9
602,312 - QEN71_RS02675 0.46 -0.5
602,312 - QEN71_RS02675 0.46 +0.5
602,312 - QEN71_RS02675 0.46 +0.1
602,449 + QEN71_RS02675 0.57 -1.2
602,449 + QEN71_RS02675 0.57 -0.4
602,449 + QEN71_RS02675 0.57 +0.7
602,449 + QEN71_RS02675 0.57 -2.0
602,449 + QEN71_RS02675 0.57 +0.2
602,450 - QEN71_RS02675 0.57 +0.5
602,450 - QEN71_RS02675 0.57 +0.0
602,450 - QEN71_RS02675 0.57 -0.2
602,461 + QEN71_RS02675 0.58 +0.2
602,461 + QEN71_RS02675 0.58 +0.3
602,461 + QEN71_RS02675 0.58 -0.1
602,462 - QEN71_RS02675 0.58 +0.7
602,462 - QEN71_RS02675 0.58 +1.4
602,548 + QEN71_RS02675 0.65 -1.0
602,587 + QEN71_RS02675 0.68 +0.3
602,587 + QEN71_RS02675 0.68 +0.0
602,587 + QEN71_RS02675 0.68 +0.8
602,587 + QEN71_RS02675 0.68 +0.3
602,587 + QEN71_RS02675 0.68 +0.2
602,587 + QEN71_RS02675 0.68 -1.1
602,587 + QEN71_RS02675 0.68 -0.5
602,587 + QEN71_RS02675 0.68 +1.1
602,587 + QEN71_RS02675 0.68 +0.5
602,587 + QEN71_RS02675 0.68 +1.6
602,703 - QEN71_RS02675 0.77 -0.4
602,703 - QEN71_RS02675 0.77 +1.3
602,703 - QEN71_RS02675 0.77 +0.6
602,792 + QEN71_RS02675 0.84 -2.5
602,793 - QEN71_RS02675 0.84 -0.4
602,835 + QEN71_RS02675 0.88 -2.0
602,896 + -1.9
602,896 + -0.1
602,896 + +1.6
602,896 + +0.1
602,896 + +0.9
602,896 + +1.1
602,896 + +1.9
602,897 - +2.1
602,897 - -0.0
602,897 - +1.4
602,897 - -0.1
603,112 - QEN71_RS02680 0.15 -0.3
603,313 + QEN71_RS02680 0.46 +0.5
603,313 + QEN71_RS02680 0.46 -1.7
603,313 + QEN71_RS02680 0.46 -0.0
603,313 + QEN71_RS02680 0.46 -0.3
603,313 + QEN71_RS02680 0.46 -0.6
603,314 - QEN71_RS02680 0.46 -0.3
603,314 - QEN71_RS02680 0.46 +0.3
603,314 - QEN71_RS02680 0.46 +0.7
603,314 - QEN71_RS02680 0.46 +0.6
603,314 - QEN71_RS02680 0.46 -0.7
603,314 - QEN71_RS02680 0.46 -0.1
603,314 - QEN71_RS02680 0.46 +0.1
603,314 - QEN71_RS02680 0.46 +1.3
603,314 - QEN71_RS02680 0.46 -0.8
603,330 + QEN71_RS02680 0.49 -0.4
603,330 + QEN71_RS02680 0.49 +0.2
603,330 + QEN71_RS02680 0.49 +0.0
603,331 - QEN71_RS02680 0.49 -0.1
603,331 - QEN71_RS02680 0.49 +1.3
603,331 - QEN71_RS02680 0.49 +0.3
603,331 - QEN71_RS02680 0.49 -0.5
603,331 - QEN71_RS02680 0.49 -0.0
603,331 - QEN71_RS02680 0.49 -0.7
603,331 - QEN71_RS02680 0.49 +0.9
603,331 - QEN71_RS02680 0.49 +0.3
603,331 - QEN71_RS02680 0.49 +1.5
603,374 + QEN71_RS02680 0.56 -0.7
603,374 + QEN71_RS02680 0.56 +0.4
603,374 + QEN71_RS02680 0.56 -0.5
603,375 - QEN71_RS02680 0.56 -0.0
603,375 - QEN71_RS02680 0.56 -0.7
603,375 - QEN71_RS02680 0.56 -1.0
603,375 - QEN71_RS02680 0.56 -0.4
603,441 + QEN71_RS02680 0.66 +0.9
603,441 + QEN71_RS02680 0.66 +1.4
603,441 + QEN71_RS02680 0.66 -0.8
603,441 + QEN71_RS02680 0.66 +0.4
603,441 + QEN71_RS02680 0.66 +0.5
603,442 - QEN71_RS02680 0.66 -0.7
603,442 - QEN71_RS02680 0.66 +0.8
603,442 - QEN71_RS02680 0.66 -0.8
603,442 - QEN71_RS02680 0.66 -0.8
603,442 - QEN71_RS02680 0.66 +0.1
603,442 - QEN71_RS02680 0.66 -0.3
603,487 - QEN71_RS02680 0.73 -1.0
603,487 - QEN71_RS02680 0.73 -0.1
603,686 + -1.5
603,686 + -0.1
603,686 + +0.1
603,686 + -1.8
603,686 + +1.2
603,686 + -1.5
603,687 + +1.0
603,687 - +1.1
603,687 - -1.2
603,687 - +0.5
603,687 - +0.7
603,687 - -0.3
603,687 - -0.4
603,687 - +1.1
603,687 - -0.7
603,699 + +0.4
603,699 + -0.9
603,727 + +0.9
603,761 + +1.1
603,762 - +1.4
603,829 + -0.6
604,014 + QEN71_RS02685 0.43 +0.1
604,014 + QEN71_RS02685 0.43 +0.1
604,014 + QEN71_RS02685 0.43 -1.8
604,015 - QEN71_RS02685 0.44 -1.5
604,015 - QEN71_RS02685 0.44 -0.4
604,015 - QEN71_RS02685 0.44 +0.8
604,118 + QEN71_RS02685 0.64 +0.9
604,118 + QEN71_RS02685 0.64 +0.1
604,118 + QEN71_RS02685 0.64 -0.4
604,118 + QEN71_RS02685 0.64 -1.0
604,119 - QEN71_RS02685 0.64 -0.9
604,119 - QEN71_RS02685 0.64 +0.9
604,119 - QEN71_RS02685 0.64 -0.7
604,119 - QEN71_RS02685 0.64 -0.5
604,119 - QEN71_RS02685 0.64 -0.8
604,119 - QEN71_RS02685 0.64 -0.6
604,119 - QEN71_RS02685 0.64 -0.1
604,155 - QEN71_RS02685 0.71 +0.0
604,181 + QEN71_RS02685 0.76 -1.5
604,181 + QEN71_RS02685 0.76 -1.4
604,181 + QEN71_RS02685 0.76 -0.5
604,181 + QEN71_RS02685 0.76 -0.1
604,181 + QEN71_RS02685 0.76 -0.9
604,181 + QEN71_RS02685 0.76 +0.6
604,182 - QEN71_RS02685 0.77 -0.0
604,182 - QEN71_RS02685 0.77 -1.1
604,182 - QEN71_RS02685 0.77 -0.7
604,486 - QEN71_RS02690 0.25 -0.1
604,532 + QEN71_RS02690 0.34 +1.5
604,647 + QEN71_RS02690 0.56 -0.5
604,647 + QEN71_RS02690 0.56 -0.1
604,647 + QEN71_RS02690 0.56 +0.9
604,647 + QEN71_RS02690 0.56 -1.9
604,647 + QEN71_RS02690 0.56 -0.5
604,647 + QEN71_RS02690 0.56 +0.3
604,647 + QEN71_RS02690 0.56 +0.0
604,647 + QEN71_RS02690 0.56 -0.1
604,647 + QEN71_RS02690 0.56 -0.5
604,647 + QEN71_RS02690 0.56 +0.2
604,647 + QEN71_RS02690 0.56 -1.5
604,647 + QEN71_RS02690 0.56 -1.2
604,647 + QEN71_RS02690 0.56 -0.3
604,647 + QEN71_RS02690 0.56 -0.1
604,647 + QEN71_RS02690 0.56 +0.1
604,647 + QEN71_RS02690 0.56 -0.3
604,648 - QEN71_RS02690 0.57 +0.1
604,648 - QEN71_RS02690 0.57 -0.8
604,648 - QEN71_RS02690 0.57 -1.0
604,648 - QEN71_RS02690 0.57 -1.3
604,648 - QEN71_RS02690 0.57 -1.7
604,648 - QEN71_RS02690 0.57 +0.3
604,648 - QEN71_RS02690 0.57 -0.7
604,648 - QEN71_RS02690 0.57 -0.1
604,648 - QEN71_RS02690 0.57 -0.3
604,648 - QEN71_RS02690 0.57 -0.5
604,648 - QEN71_RS02690 0.57 -0.1
604,648 - QEN71_RS02690 0.57 -0.2
604,648 - QEN71_RS02690 0.57 -0.9

Or see this region's nucleotide sequence