Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06470

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06469 and MPMX19_06470 are separated by 37 nucleotidesMPMX19_06470 and MPMX19_06471 are separated by 155 nucleotidesMPMX19_06471 and MPMX19_06472 are separated by 7 nucleotides MPMX19_06469: MPMX19_06469 - hypothetical protein, at 253,004 to 254,002 _06469 MPMX19_06470: MPMX19_06470 - 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase, at 254,040 to 254,825 _06470 MPMX19_06471: MPMX19_06471 - Glyoxylate/hydroxypyruvate reductase A, at 254,981 to 255,811 _06471 MPMX19_06472: MPMX19_06472 - Alkanesulfonate monooxygenase, at 255,819 to 256,943 _06472 Position (kb) 254 255Strain fitness (log2 ratio) -2 -1 0 1 2at 253.061 kb on - strandat 253.061 kb on - strandat 253.061 kb on - strandat 253.061 kb on - strandat 253.092 kb on + strandat 253.092 kb on + strandat 253.093 kb on - strandat 253.203 kb on + strand, within MPMX19_06469at 253.203 kb on + strand, within MPMX19_06469at 253.203 kb on + strand, within MPMX19_06469at 253.203 kb on + strand, within MPMX19_06469at 253.203 kb on + strand, within MPMX19_06469at 253.204 kb on - strand, within MPMX19_06469at 253.204 kb on - strand, within MPMX19_06469at 253.204 kb on - strand, within MPMX19_06469at 253.204 kb on - strand, within MPMX19_06469at 253.233 kb on + strand, within MPMX19_06469at 253.234 kb on - strand, within MPMX19_06469at 253.234 kb on - strand, within MPMX19_06469at 253.234 kb on - strand, within MPMX19_06469at 253.234 kb on - strand, within MPMX19_06469at 253.234 kb on - strand, within MPMX19_06469at 253.234 kb on - strand, within MPMX19_06469at 253.234 kb on - strand, within MPMX19_06469at 253.234 kb on - strand, within MPMX19_06469at 253.267 kb on + strand, within MPMX19_06469at 253.268 kb on - strand, within MPMX19_06469at 253.268 kb on - strand, within MPMX19_06469at 253.268 kb on - strand, within MPMX19_06469at 253.268 kb on - strand, within MPMX19_06469at 253.366 kb on + strand, within MPMX19_06469at 253.366 kb on + strand, within MPMX19_06469at 253.366 kb on + strand, within MPMX19_06469at 253.366 kb on + strand, within MPMX19_06469at 253.367 kb on - strand, within MPMX19_06469at 253.367 kb on - strand, within MPMX19_06469at 253.367 kb on - strand, within MPMX19_06469at 253.367 kb on - strand, within MPMX19_06469at 253.367 kb on - strand, within MPMX19_06469at 253.367 kb on - strand, within MPMX19_06469at 253.393 kb on + strand, within MPMX19_06469at 253.394 kb on - strand, within MPMX19_06469at 253.394 kb on - strand, within MPMX19_06469at 253.394 kb on - strand, within MPMX19_06469at 253.463 kb on + strand, within MPMX19_06469at 253.463 kb on + strand, within MPMX19_06469at 253.463 kb on + strand, within MPMX19_06469at 253.464 kb on - strand, within MPMX19_06469at 253.464 kb on - strand, within MPMX19_06469at 253.464 kb on - strand, within MPMX19_06469at 254.099 kb on - strandat 254.099 kb on - strandat 254.099 kb on - strandat 254.099 kb on - strandat 254.099 kb on - strandat 254.099 kb on - strandat 254.356 kb on + strand, within MPMX19_06470at 254.356 kb on + strand, within MPMX19_06470at 254.356 kb on + strand, within MPMX19_06470at 254.357 kb on - strand, within MPMX19_06470at 254.383 kb on + strand, within MPMX19_06470at 254.383 kb on + strand, within MPMX19_06470at 254.383 kb on + strand, within MPMX19_06470at 254.384 kb on - strand, within MPMX19_06470at 254.384 kb on - strand, within MPMX19_06470at 254.384 kb on - strand, within MPMX19_06470at 254.450 kb on - strand, within MPMX19_06470at 254.450 kb on - strand, within MPMX19_06470at 254.857 kb on + strandat 254.906 kb on - strandat 254.906 kb on - strandat 255.003 kb on + strandat 255.003 kb on + strandat 255.003 kb on + strandat 255.003 kb on + strandat 255.003 kb on + strandat 255.003 kb on + strandat 255.003 kb on + strandat 255.003 kb on + strandat 255.003 kb on + strandat 255.003 kb on + strandat 255.004 kb on - strandat 255.004 kb on - strandat 255.004 kb on - strandat 255.004 kb on - strandat 255.004 kb on - strandat 255.004 kb on - strandat 255.004 kb on - strandat 255.004 kb on - strandat 255.173 kb on + strand, within MPMX19_06471at 255.173 kb on + strand, within MPMX19_06471at 255.174 kb on - strand, within MPMX19_06471at 255.174 kb on - strand, within MPMX19_06471at 255.486 kb on + strand, within MPMX19_06471at 255.486 kb on + strand, within MPMX19_06471at 255.486 kb on + strand, within MPMX19_06471at 255.487 kb on - strand, within MPMX19_06471at 255.487 kb on - strand, within MPMX19_06471at 255.487 kb on - strand, within MPMX19_06471at 255.510 kb on - strand, within MPMX19_06471at 255.561 kb on + strand, within MPMX19_06471at 255.577 kb on + strand, within MPMX19_06471at 255.577 kb on + strand, within MPMX19_06471

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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253,061 - +0.2
253,061 - +1.2
253,061 - -0.4
253,061 - -1.3
253,092 + +1.3
253,092 + +0.3
253,093 - -0.2
253,203 + MPMX19_06469 0.20 -0.7
253,203 + MPMX19_06469 0.20 +0.1
253,203 + MPMX19_06469 0.20 +2.5
253,203 + MPMX19_06469 0.20 -1.5
253,203 + MPMX19_06469 0.20 +0.2
253,204 - MPMX19_06469 0.20 -0.2
253,204 - MPMX19_06469 0.20 +0.7
253,204 - MPMX19_06469 0.20 -1.8
253,204 - MPMX19_06469 0.20 +0.5
253,233 + MPMX19_06469 0.23 +0.1
253,234 - MPMX19_06469 0.23 +0.1
253,234 - MPMX19_06469 0.23 -0.6
253,234 - MPMX19_06469 0.23 -1.1
253,234 - MPMX19_06469 0.23 -1.3
253,234 - MPMX19_06469 0.23 +1.3
253,234 - MPMX19_06469 0.23 +1.1
253,234 - MPMX19_06469 0.23 +0.6
253,234 - MPMX19_06469 0.23 -0.3
253,267 + MPMX19_06469 0.26 -0.9
253,268 - MPMX19_06469 0.26 +0.1
253,268 - MPMX19_06469 0.26 +0.7
253,268 - MPMX19_06469 0.26 +0.7
253,268 - MPMX19_06469 0.26 -0.7
253,366 + MPMX19_06469 0.36 +0.5
253,366 + MPMX19_06469 0.36 +0.2
253,366 + MPMX19_06469 0.36 -1.7
253,366 + MPMX19_06469 0.36 -1.3
253,367 - MPMX19_06469 0.36 +1.1
253,367 - MPMX19_06469 0.36 -1.8
253,367 - MPMX19_06469 0.36 +1.0
253,367 - MPMX19_06469 0.36 -0.8
253,367 - MPMX19_06469 0.36 -0.8
253,367 - MPMX19_06469 0.36 -0.6
253,393 + MPMX19_06469 0.39 -1.7
253,394 - MPMX19_06469 0.39 -0.7
253,394 - MPMX19_06469 0.39 +0.4
253,394 - MPMX19_06469 0.39 +0.1
253,463 + MPMX19_06469 0.46 +0.6
253,463 + MPMX19_06469 0.46 -0.7
253,463 + MPMX19_06469 0.46 +0.9
253,464 - MPMX19_06469 0.46 -1.7
253,464 - MPMX19_06469 0.46 -0.5
253,464 - MPMX19_06469 0.46 -1.2
254,099 - -0.1
254,099 - +1.7
254,099 - +0.2
254,099 - -0.1
254,099 - -0.6
254,099 - -0.7
254,356 + MPMX19_06470 0.40 +0.2
254,356 + MPMX19_06470 0.40 +0.5
254,356 + MPMX19_06470 0.40 -0.2
254,357 - MPMX19_06470 0.40 -0.8
254,383 + MPMX19_06470 0.44 -0.8
254,383 + MPMX19_06470 0.44 +0.8
254,383 + MPMX19_06470 0.44 +1.5
254,384 - MPMX19_06470 0.44 +0.4
254,384 - MPMX19_06470 0.44 +0.1
254,384 - MPMX19_06470 0.44 -0.6
254,450 - MPMX19_06470 0.52 -2.0
254,450 - MPMX19_06470 0.52 -0.0
254,857 + -2.0
254,906 - +1.5
254,906 - +0.1
255,003 + -0.8
255,003 + -1.8
255,003 + +0.5
255,003 + -0.3
255,003 + -0.1
255,003 + -0.6
255,003 + -0.1
255,003 + -1.1
255,003 + +0.8
255,003 + +0.5
255,004 - -0.7
255,004 - +0.8
255,004 - -0.1
255,004 - -2.2
255,004 - +0.4
255,004 - -0.1
255,004 - -0.3
255,004 - +0.4
255,173 + MPMX19_06471 0.23 -1.0
255,173 + MPMX19_06471 0.23 +0.6
255,174 - MPMX19_06471 0.23 -0.1
255,174 - MPMX19_06471 0.23 -1.0
255,486 + MPMX19_06471 0.61 +0.2
255,486 + MPMX19_06471 0.61 +0.3
255,486 + MPMX19_06471 0.61 +0.3
255,487 - MPMX19_06471 0.61 -1.2
255,487 - MPMX19_06471 0.61 -1.5
255,487 - MPMX19_06471 0.61 +0.7
255,510 - MPMX19_06471 0.64 -0.2
255,561 + MPMX19_06471 0.70 +2.0
255,577 + MPMX19_06471 0.72 -0.5
255,577 + MPMX19_06471 0.72 -1.7

Or see this region's nucleotide sequence