Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05967

Experiment: NL-CCM; spin-x control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05966 and MPMX19_05967 are separated by 187 nucleotidesMPMX19_05967 and MPMX19_05968 overlap by 4 nucleotides MPMX19_05966: MPMX19_05966 - hypothetical protein, at 115,588 to 117,765 _05966 MPMX19_05967: MPMX19_05967 - D-erythritol 1-phosphate dehydrogenase, at 117,953 to 119,524 _05967 MPMX19_05968: MPMX19_05968 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 119,521 to 120,624 _05968 Position (kb) 117 118 119 120Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 117.321 kb on + strand, within MPMX19_05966at 117.321 kb on + strand, within MPMX19_05966at 117.321 kb on + strand, within MPMX19_05966at 117.322 kb on - strand, within MPMX19_05966at 117.322 kb on - strand, within MPMX19_05966at 117.322 kb on - strand, within MPMX19_05966at 117.322 kb on - strand, within MPMX19_05966at 117.798 kb on + strandat 117.798 kb on + strandat 117.798 kb on + strandat 117.798 kb on + strandat 117.798 kb on + strandat 117.799 kb on - strandat 117.799 kb on - strandat 117.799 kb on - strandat 117.799 kb on - strandat 117.799 kb on - strandat 117.799 kb on - strandat 117.799 kb on - strandat 117.831 kb on - strandat 117.891 kb on + strandat 117.892 kb on - strandat 117.892 kb on - strandat 117.892 kb on - strandat 117.892 kb on - strandat 117.892 kb on - strandat 117.892 kb on - strandat 117.892 kb on - strandat 117.892 kb on - strandat 117.892 kb on - strandat 117.892 kb on - strandat 117.892 kb on - strandat 117.892 kb on - strandat 117.892 kb on - strandat 117.892 kb on - strandat 117.892 kb on - strandat 118.128 kb on - strand, within MPMX19_05967at 118.137 kb on - strand, within MPMX19_05967at 118.287 kb on - strand, within MPMX19_05967at 118.710 kb on - strand, within MPMX19_05967at 118.710 kb on - strand, within MPMX19_05967at 118.710 kb on - strand, within MPMX19_05967at 118.710 kb on - strand, within MPMX19_05967at 118.710 kb on - strand, within MPMX19_05967at 118.710 kb on - strand, within MPMX19_05967at 118.710 kb on - strand, within MPMX19_05967at 118.755 kb on - strand, within MPMX19_05967at 118.755 kb on - strand, within MPMX19_05967at 118.845 kb on - strand, within MPMX19_05967at 118.845 kb on - strand, within MPMX19_05967at 118.845 kb on - strand, within MPMX19_05967at 118.845 kb on - strand, within MPMX19_05967at 118.845 kb on - strand, within MPMX19_05967at 118.845 kb on - strand, within MPMX19_05967at 118.869 kb on - strand, within MPMX19_05967at 118.911 kb on - strand, within MPMX19_05967at 118.911 kb on - strand, within MPMX19_05967at 118.911 kb on - strand, within MPMX19_05967at 118.974 kb on - strand, within MPMX19_05967at 118.974 kb on - strand, within MPMX19_05967at 118.974 kb on - strand, within MPMX19_05967at 119.476 kb on + strandat 119.758 kb on + strand, within MPMX19_05968at 119.758 kb on + strand, within MPMX19_05968at 119.758 kb on + strand, within MPMX19_05968at 119.758 kb on + strand, within MPMX19_05968at 119.758 kb on + strand, within MPMX19_05968at 119.758 kb on + strand, within MPMX19_05968at 119.758 kb on + strand, within MPMX19_05968at 119.758 kb on + strand, within MPMX19_05968at 119.759 kb on - strand, within MPMX19_05968at 119.776 kb on + strand, within MPMX19_05968at 119.777 kb on - strand, within MPMX19_05968at 119.777 kb on - strand, within MPMX19_05968at 119.777 kb on - strand, within MPMX19_05968at 119.777 kb on - strand, within MPMX19_05968at 119.777 kb on - strand, within MPMX19_05968at 119.893 kb on + strand, within MPMX19_05968at 119.893 kb on + strand, within MPMX19_05968at 119.893 kb on + strand, within MPMX19_05968at 119.894 kb on - strand, within MPMX19_05968at 119.894 kb on - strand, within MPMX19_05968at 120.013 kb on + strand, within MPMX19_05968at 120.013 kb on + strand, within MPMX19_05968at 120.013 kb on + strand, within MPMX19_05968at 120.013 kb on + strand, within MPMX19_05968at 120.013 kb on + strand, within MPMX19_05968at 120.013 kb on + strand, within MPMX19_05968at 120.014 kb on - strand, within MPMX19_05968at 120.014 kb on - strand, within MPMX19_05968at 120.014 kb on - strand, within MPMX19_05968at 120.014 kb on - strand, within MPMX19_05968at 120.014 kb on - strand, within MPMX19_05968at 120.014 kb on - strand, within MPMX19_05968at 120.082 kb on + strand, within MPMX19_05968at 120.082 kb on + strand, within MPMX19_05968at 120.082 kb on + strand, within MPMX19_05968at 120.082 kb on + strand, within MPMX19_05968at 120.083 kb on - strand, within MPMX19_05968at 120.083 kb on - strand, within MPMX19_05968at 120.410 kb on + strand, within MPMX19_05968at 120.410 kb on + strand, within MPMX19_05968at 120.410 kb on + strand, within MPMX19_05968at 120.410 kb on + strand, within MPMX19_05968at 120.410 kb on + strand, within MPMX19_05968at 120.411 kb on - strand, within MPMX19_05968at 120.411 kb on - strand, within MPMX19_05968at 120.411 kb on - strand, within MPMX19_05968at 120.411 kb on - strand, within MPMX19_05968at 120.411 kb on - strand, within MPMX19_05968at 120.411 kb on - strand, within MPMX19_05968at 120.411 kb on - strand, within MPMX19_05968

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
remove
117,321 + MPMX19_05966 0.80 -0.3
117,321 + MPMX19_05966 0.80 +0.1
117,321 + MPMX19_05966 0.80 +0.8
117,322 - MPMX19_05966 0.80 +0.1
117,322 - MPMX19_05966 0.80 +1.3
117,322 - MPMX19_05966 0.80 -0.6
117,322 - MPMX19_05966 0.80 +0.0
117,798 + -1.2
117,798 + +0.7
117,798 + -0.5
117,798 + -0.1
117,798 + +2.0
117,799 - +0.3
117,799 - -1.2
117,799 - -0.3
117,799 - +0.7
117,799 - -0.6
117,799 - +1.8
117,799 - -0.4
117,831 - +0.1
117,891 + +0.4
117,892 - -0.7
117,892 - -2.9
117,892 - +0.4
117,892 - -1.5
117,892 - +0.1
117,892 - -0.4
117,892 - +0.2
117,892 - -0.4
117,892 - -0.6
117,892 - -1.9
117,892 - -2.2
117,892 - +0.8
117,892 - -1.3
117,892 - +0.0
117,892 - -1.9
118,128 - MPMX19_05967 0.11 -0.9
118,137 - MPMX19_05967 0.12 -1.8
118,287 - MPMX19_05967 0.21 -2.3
118,710 - MPMX19_05967 0.48 -0.5
118,710 - MPMX19_05967 0.48 +0.2
118,710 - MPMX19_05967 0.48 -0.6
118,710 - MPMX19_05967 0.48 -1.6
118,710 - MPMX19_05967 0.48 -1.6
118,710 - MPMX19_05967 0.48 -0.6
118,710 - MPMX19_05967 0.48 -0.3
118,755 - MPMX19_05967 0.51 +0.6
118,755 - MPMX19_05967 0.51 -0.6
118,845 - MPMX19_05967 0.57 -0.3
118,845 - MPMX19_05967 0.57 +1.2
118,845 - MPMX19_05967 0.57 -0.6
118,845 - MPMX19_05967 0.57 -2.5
118,845 - MPMX19_05967 0.57 -1.2
118,845 - MPMX19_05967 0.57 +0.1
118,869 - MPMX19_05967 0.58 -1.4
118,911 - MPMX19_05967 0.61 -2.2
118,911 - MPMX19_05967 0.61 -2.3
118,911 - MPMX19_05967 0.61 -0.0
118,974 - MPMX19_05967 0.65 +0.1
118,974 - MPMX19_05967 0.65 -0.7
118,974 - MPMX19_05967 0.65 +2.6
119,476 + +1.4
119,758 + MPMX19_05968 0.21 -0.7
119,758 + MPMX19_05968 0.21 -0.5
119,758 + MPMX19_05968 0.21 -1.8
119,758 + MPMX19_05968 0.21 +0.4
119,758 + MPMX19_05968 0.21 +0.2
119,758 + MPMX19_05968 0.21 +0.7
119,758 + MPMX19_05968 0.21 +0.9
119,758 + MPMX19_05968 0.21 +0.6
119,759 - MPMX19_05968 0.22 -1.9
119,776 + MPMX19_05968 0.23 -0.3
119,777 - MPMX19_05968 0.23 -0.6
119,777 - MPMX19_05968 0.23 +0.7
119,777 - MPMX19_05968 0.23 -0.5
119,777 - MPMX19_05968 0.23 -1.3
119,777 - MPMX19_05968 0.23 -0.7
119,893 + MPMX19_05968 0.34 +0.7
119,893 + MPMX19_05968 0.34 +0.0
119,893 + MPMX19_05968 0.34 +1.7
119,894 - MPMX19_05968 0.34 -0.3
119,894 - MPMX19_05968 0.34 +0.4
120,013 + MPMX19_05968 0.45 +0.3
120,013 + MPMX19_05968 0.45 +0.3
120,013 + MPMX19_05968 0.45 -2.3
120,013 + MPMX19_05968 0.45 -0.4
120,013 + MPMX19_05968 0.45 -1.9
120,013 + MPMX19_05968 0.45 -0.8
120,014 - MPMX19_05968 0.45 +0.0
120,014 - MPMX19_05968 0.45 -0.1
120,014 - MPMX19_05968 0.45 +0.5
120,014 - MPMX19_05968 0.45 -0.1
120,014 - MPMX19_05968 0.45 +1.2
120,014 - MPMX19_05968 0.45 -0.9
120,082 + MPMX19_05968 0.51 -0.2
120,082 + MPMX19_05968 0.51 +0.0
120,082 + MPMX19_05968 0.51 +1.4
120,082 + MPMX19_05968 0.51 -0.3
120,083 - MPMX19_05968 0.51 -2.2
120,083 - MPMX19_05968 0.51 -0.2
120,410 + MPMX19_05968 0.81 -0.9
120,410 + MPMX19_05968 0.81 -0.7
120,410 + MPMX19_05968 0.81 +1.4
120,410 + MPMX19_05968 0.81 +0.1
120,410 + MPMX19_05968 0.81 -1.2
120,411 - MPMX19_05968 0.81 +0.2
120,411 - MPMX19_05968 0.81 +1.1
120,411 - MPMX19_05968 0.81 +0.8
120,411 - MPMX19_05968 0.81 +0.8
120,411 - MPMX19_05968 0.81 +0.7
120,411 - MPMX19_05968 0.81 -0.4
120,411 - MPMX19_05968 0.81 -1.5

Or see this region's nucleotide sequence