Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05966 and MPMX19_05967 are separated by 187 nucleotides MPMX19_05967 and MPMX19_05968 overlap by 4 nucleotides
MPMX19_05966: MPMX19_05966 - hypothetical protein, at 115,588 to 117,765
_05966
MPMX19_05967: MPMX19_05967 - D-erythritol 1-phosphate dehydrogenase, at 117,953 to 119,524
_05967
MPMX19_05968: MPMX19_05968 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 119,521 to 120,624
_05968
Position (kb)
117
118
119
120 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 117.321 kb on + strand, within MPMX19_05966 at 117.321 kb on + strand, within MPMX19_05966 at 117.321 kb on + strand, within MPMX19_05966 at 117.322 kb on - strand, within MPMX19_05966 at 117.322 kb on - strand, within MPMX19_05966 at 117.322 kb on - strand, within MPMX19_05966 at 117.322 kb on - strand, within MPMX19_05966 at 117.798 kb on + strand at 117.798 kb on + strand at 117.798 kb on + strand at 117.798 kb on + strand at 117.798 kb on + strand at 117.799 kb on - strand at 117.799 kb on - strand at 117.799 kb on - strand at 117.799 kb on - strand at 117.799 kb on - strand at 117.799 kb on - strand at 117.799 kb on - strand at 117.831 kb on - strand at 117.891 kb on + strand at 117.892 kb on - strand at 117.892 kb on - strand at 117.892 kb on - strand at 117.892 kb on - strand at 117.892 kb on - strand at 117.892 kb on - strand at 117.892 kb on - strand at 117.892 kb on - strand at 117.892 kb on - strand at 117.892 kb on - strand at 117.892 kb on - strand at 117.892 kb on - strand at 117.892 kb on - strand at 117.892 kb on - strand at 117.892 kb on - strand at 118.128 kb on - strand, within MPMX19_05967 at 118.137 kb on - strand, within MPMX19_05967 at 118.287 kb on - strand, within MPMX19_05967 at 118.710 kb on - strand, within MPMX19_05967 at 118.710 kb on - strand, within MPMX19_05967 at 118.710 kb on - strand, within MPMX19_05967 at 118.710 kb on - strand, within MPMX19_05967 at 118.710 kb on - strand, within MPMX19_05967 at 118.710 kb on - strand, within MPMX19_05967 at 118.710 kb on - strand, within MPMX19_05967 at 118.755 kb on - strand, within MPMX19_05967 at 118.755 kb on - strand, within MPMX19_05967 at 118.845 kb on - strand, within MPMX19_05967 at 118.845 kb on - strand, within MPMX19_05967 at 118.845 kb on - strand, within MPMX19_05967 at 118.845 kb on - strand, within MPMX19_05967 at 118.845 kb on - strand, within MPMX19_05967 at 118.845 kb on - strand, within MPMX19_05967 at 118.869 kb on - strand, within MPMX19_05967 at 118.911 kb on - strand, within MPMX19_05967 at 118.911 kb on - strand, within MPMX19_05967 at 118.911 kb on - strand, within MPMX19_05967 at 118.974 kb on - strand, within MPMX19_05967 at 118.974 kb on - strand, within MPMX19_05967 at 118.974 kb on - strand, within MPMX19_05967 at 119.476 kb on + strand at 119.758 kb on + strand, within MPMX19_05968 at 119.758 kb on + strand, within MPMX19_05968 at 119.758 kb on + strand, within MPMX19_05968 at 119.758 kb on + strand, within MPMX19_05968 at 119.758 kb on + strand, within MPMX19_05968 at 119.758 kb on + strand, within MPMX19_05968 at 119.758 kb on + strand, within MPMX19_05968 at 119.758 kb on + strand, within MPMX19_05968 at 119.759 kb on - strand, within MPMX19_05968 at 119.776 kb on + strand, within MPMX19_05968 at 119.777 kb on - strand, within MPMX19_05968 at 119.777 kb on - strand, within MPMX19_05968 at 119.777 kb on - strand, within MPMX19_05968 at 119.777 kb on - strand, within MPMX19_05968 at 119.777 kb on - strand, within MPMX19_05968 at 119.893 kb on + strand, within MPMX19_05968 at 119.893 kb on + strand, within MPMX19_05968 at 119.893 kb on + strand, within MPMX19_05968 at 119.894 kb on - strand, within MPMX19_05968 at 119.894 kb on - strand, within MPMX19_05968 at 120.013 kb on + strand, within MPMX19_05968 at 120.013 kb on + strand, within MPMX19_05968 at 120.013 kb on + strand, within MPMX19_05968 at 120.013 kb on + strand, within MPMX19_05968 at 120.013 kb on + strand, within MPMX19_05968 at 120.013 kb on + strand, within MPMX19_05968 at 120.014 kb on - strand, within MPMX19_05968 at 120.014 kb on - strand, within MPMX19_05968 at 120.014 kb on - strand, within MPMX19_05968 at 120.014 kb on - strand, within MPMX19_05968 at 120.014 kb on - strand, within MPMX19_05968 at 120.014 kb on - strand, within MPMX19_05968 at 120.082 kb on + strand, within MPMX19_05968 at 120.082 kb on + strand, within MPMX19_05968 at 120.082 kb on + strand, within MPMX19_05968 at 120.082 kb on + strand, within MPMX19_05968 at 120.083 kb on - strand, within MPMX19_05968 at 120.083 kb on - strand, within MPMX19_05968 at 120.410 kb on + strand, within MPMX19_05968 at 120.410 kb on + strand, within MPMX19_05968 at 120.410 kb on + strand, within MPMX19_05968 at 120.410 kb on + strand, within MPMX19_05968 at 120.410 kb on + strand, within MPMX19_05968 at 120.411 kb on - strand, within MPMX19_05968 at 120.411 kb on - strand, within MPMX19_05968 at 120.411 kb on - strand, within MPMX19_05968 at 120.411 kb on - strand, within MPMX19_05968 at 120.411 kb on - strand, within MPMX19_05968 at 120.411 kb on - strand, within MPMX19_05968 at 120.411 kb on - strand, within MPMX19_05968
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 117,321 + MPMX19_05966 0.80 -0.3 117,321 + MPMX19_05966 0.80 +0.1 117,321 + MPMX19_05966 0.80 +0.8 117,322 - MPMX19_05966 0.80 +0.1 117,322 - MPMX19_05966 0.80 +1.3 117,322 - MPMX19_05966 0.80 -0.6 117,322 - MPMX19_05966 0.80 +0.0 117,798 + -1.2 117,798 + +0.7 117,798 + -0.5 117,798 + -0.1 117,798 + +2.0 117,799 - +0.3 117,799 - -1.2 117,799 - -0.3 117,799 - +0.7 117,799 - -0.6 117,799 - +1.8 117,799 - -0.4 117,831 - +0.1 117,891 + +0.4 117,892 - -0.7 117,892 - -2.9 117,892 - +0.4 117,892 - -1.5 117,892 - +0.1 117,892 - -0.4 117,892 - +0.2 117,892 - -0.4 117,892 - -0.6 117,892 - -1.9 117,892 - -2.2 117,892 - +0.8 117,892 - -1.3 117,892 - +0.0 117,892 - -1.9 118,128 - MPMX19_05967 0.11 -0.9 118,137 - MPMX19_05967 0.12 -1.8 118,287 - MPMX19_05967 0.21 -2.3 118,710 - MPMX19_05967 0.48 -0.5 118,710 - MPMX19_05967 0.48 +0.2 118,710 - MPMX19_05967 0.48 -0.6 118,710 - MPMX19_05967 0.48 -1.6 118,710 - MPMX19_05967 0.48 -1.6 118,710 - MPMX19_05967 0.48 -0.6 118,710 - MPMX19_05967 0.48 -0.3 118,755 - MPMX19_05967 0.51 +0.6 118,755 - MPMX19_05967 0.51 -0.6 118,845 - MPMX19_05967 0.57 -0.3 118,845 - MPMX19_05967 0.57 +1.2 118,845 - MPMX19_05967 0.57 -0.6 118,845 - MPMX19_05967 0.57 -2.5 118,845 - MPMX19_05967 0.57 -1.2 118,845 - MPMX19_05967 0.57 +0.1 118,869 - MPMX19_05967 0.58 -1.4 118,911 - MPMX19_05967 0.61 -2.2 118,911 - MPMX19_05967 0.61 -2.3 118,911 - MPMX19_05967 0.61 -0.0 118,974 - MPMX19_05967 0.65 +0.1 118,974 - MPMX19_05967 0.65 -0.7 118,974 - MPMX19_05967 0.65 +2.6 119,476 + +1.4 119,758 + MPMX19_05968 0.21 -0.7 119,758 + MPMX19_05968 0.21 -0.5 119,758 + MPMX19_05968 0.21 -1.8 119,758 + MPMX19_05968 0.21 +0.4 119,758 + MPMX19_05968 0.21 +0.2 119,758 + MPMX19_05968 0.21 +0.7 119,758 + MPMX19_05968 0.21 +0.9 119,758 + MPMX19_05968 0.21 +0.6 119,759 - MPMX19_05968 0.22 -1.9 119,776 + MPMX19_05968 0.23 -0.3 119,777 - MPMX19_05968 0.23 -0.6 119,777 - MPMX19_05968 0.23 +0.7 119,777 - MPMX19_05968 0.23 -0.5 119,777 - MPMX19_05968 0.23 -1.3 119,777 - MPMX19_05968 0.23 -0.7 119,893 + MPMX19_05968 0.34 +0.7 119,893 + MPMX19_05968 0.34 +0.0 119,893 + MPMX19_05968 0.34 +1.7 119,894 - MPMX19_05968 0.34 -0.3 119,894 - MPMX19_05968 0.34 +0.4 120,013 + MPMX19_05968 0.45 +0.3 120,013 + MPMX19_05968 0.45 +0.3 120,013 + MPMX19_05968 0.45 -2.3 120,013 + MPMX19_05968 0.45 -0.4 120,013 + MPMX19_05968 0.45 -1.9 120,013 + MPMX19_05968 0.45 -0.8 120,014 - MPMX19_05968 0.45 +0.0 120,014 - MPMX19_05968 0.45 -0.1 120,014 - MPMX19_05968 0.45 +0.5 120,014 - MPMX19_05968 0.45 -0.1 120,014 - MPMX19_05968 0.45 +1.2 120,014 - MPMX19_05968 0.45 -0.9 120,082 + MPMX19_05968 0.51 -0.2 120,082 + MPMX19_05968 0.51 +0.0 120,082 + MPMX19_05968 0.51 +1.4 120,082 + MPMX19_05968 0.51 -0.3 120,083 - MPMX19_05968 0.51 -2.2 120,083 - MPMX19_05968 0.51 -0.2 120,410 + MPMX19_05968 0.81 -0.9 120,410 + MPMX19_05968 0.81 -0.7 120,410 + MPMX19_05968 0.81 +1.4 120,410 + MPMX19_05968 0.81 +0.1 120,410 + MPMX19_05968 0.81 -1.2 120,411 - MPMX19_05968 0.81 +0.2 120,411 - MPMX19_05968 0.81 +1.1 120,411 - MPMX19_05968 0.81 +0.8 120,411 - MPMX19_05968 0.81 +0.8 120,411 - MPMX19_05968 0.81 +0.7 120,411 - MPMX19_05968 0.81 -0.4 120,411 - MPMX19_05968 0.81 -1.5
Or see this region's nucleotide sequence