Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05719 and MPMX19_05720 are separated by 288 nucleotides MPMX19_05720 and MPMX19_05721 are separated by 75 nucleotides
MPMX19_05719: MPMX19_05719 - hypothetical protein, at 437,849 to 438,448
_05719
MPMX19_05720: MPMX19_05720 - hypothetical protein, at 438,737 to 439,891
_05720
MPMX19_05721: MPMX19_05721 - Hydrogenase maturation factor HypB, at 439,967 to 441,019
_05721
Position (kb) 438
439
440 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 438.012 kb on + strand, within MPMX19_05719 at 438.012 kb on + strand, within MPMX19_05719 at 438.013 kb on - strand, within MPMX19_05719 at 438.013 kb on - strand, within MPMX19_05719 at 438.013 kb on - strand, within MPMX19_05719 at 438.556 kb on + strand at 438.556 kb on + strand at 438.556 kb on + strand at 438.556 kb on + strand at 438.556 kb on + strand at 438.557 kb on - strand at 438.557 kb on - strand at 438.557 kb on - strand at 438.557 kb on - strand at 438.557 kb on - strand at 438.557 kb on - strand at 438.557 kb on - strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.595 kb on + strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.596 kb on - strand at 438.612 kb on + strand at 438.612 kb on + strand at 438.612 kb on + strand at 438.612 kb on + strand at 438.612 kb on + strand at 438.613 kb on - strand at 438.613 kb on - strand at 438.613 kb on - strand at 438.613 kb on - strand at 438.613 kb on - strand at 438.616 kb on + strand at 438.616 kb on + strand at 438.616 kb on + strand at 438.616 kb on + strand at 438.616 kb on + strand at 438.616 kb on + strand at 438.617 kb on - strand at 438.617 kb on - strand at 438.617 kb on - strand at 438.617 kb on - strand at 438.617 kb on - strand at 438.617 kb on - strand at 439.113 kb on - strand, within MPMX19_05720 at 439.113 kb on - strand, within MPMX19_05720 at 439.875 kb on + strand at 439.875 kb on + strand at 439.875 kb on + strand at 439.875 kb on + strand at 439.875 kb on + strand at 439.875 kb on + strand at 439.875 kb on + strand at 439.875 kb on + strand at 439.876 kb on - strand at 439.876 kb on - strand at 439.876 kb on - strand at 439.876 kb on - strand at 439.876 kb on - strand at 439.876 kb on - strand at 439.876 kb on - strand at 439.876 kb on - strand at 439.876 kb on - strand at 439.881 kb on + strand at 439.881 kb on + strand at 439.881 kb on + strand at 439.881 kb on + strand at 439.881 kb on + strand at 439.881 kb on + strand at 439.881 kb on + strand at 439.881 kb on + strand at 439.881 kb on + strand at 439.881 kb on + strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 439.882 kb on - strand at 440.215 kb on + strand, within MPMX19_05721 at 440.215 kb on + strand, within MPMX19_05721 at 440.215 kb on + strand, within MPMX19_05721 at 440.215 kb on + strand, within MPMX19_05721 at 440.215 kb on + strand, within MPMX19_05721 at 440.215 kb on + strand, within MPMX19_05721 at 440.215 kb on + strand, within MPMX19_05721 at 440.215 kb on + strand, within MPMX19_05721 at 440.215 kb on + strand, within MPMX19_05721 at 440.215 kb on + strand, within MPMX19_05721 at 440.215 kb on + strand, within MPMX19_05721 at 440.215 kb on + strand, within MPMX19_05721 at 440.215 kb on + strand, within MPMX19_05721 at 440.215 kb on + strand, within MPMX19_05721 at 440.215 kb on + strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.216 kb on - strand, within MPMX19_05721 at 440.786 kb on + strand, within MPMX19_05721 at 440.880 kb on - strand, within MPMX19_05721
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 438,012 + MPMX19_05719 0.27 +0.1 438,012 + MPMX19_05719 0.27 -0.8 438,013 - MPMX19_05719 0.27 -2.4 438,013 - MPMX19_05719 0.27 -0.8 438,013 - MPMX19_05719 0.27 -1.6 438,556 + -0.6 438,556 + -0.3 438,556 + -2.6 438,556 + -0.1 438,556 + -0.3 438,557 - -1.0 438,557 - +0.4 438,557 - +0.1 438,557 - +1.0 438,557 - -1.2 438,557 - -0.6 438,557 - -0.2 438,595 + -1.6 438,595 + +0.4 438,595 + +1.0 438,595 + -0.3 438,595 + +0.4 438,595 + -0.7 438,595 + -0.4 438,595 + -0.9 438,595 + +0.2 438,595 + +2.0 438,595 + +0.6 438,595 + +1.4 438,595 + -0.5 438,596 - -1.2 438,596 - -2.4 438,596 - -1.4 438,596 - -2.2 438,596 - -1.0 438,596 - -0.3 438,596 - -1.2 438,596 - +0.7 438,596 - +0.9 438,596 - -2.3 438,596 - -0.8 438,596 - +0.4 438,596 - -0.5 438,596 - -0.5 438,596 - -1.3 438,612 + +0.8 438,612 + -0.9 438,612 + +1.2 438,612 + -0.8 438,612 + +0.1 438,613 - -2.2 438,613 - -1.6 438,613 - -0.8 438,613 - +1.4 438,613 - +0.4 438,616 + +0.9 438,616 + -3.1 438,616 + -0.2 438,616 + -1.6 438,616 + +0.1 438,616 + -0.6 438,617 - +0.1 438,617 - -1.4 438,617 - +2.6 438,617 - -0.0 438,617 - -0.5 438,617 - +1.2 439,113 - MPMX19_05720 0.33 +0.4 439,113 - MPMX19_05720 0.33 -1.2 439,875 + +2.0 439,875 + +1.4 439,875 + -0.9 439,875 + -2.8 439,875 + -0.2 439,875 + +0.4 439,875 + -1.9 439,875 + +0.3 439,876 - +1.4 439,876 - +0.1 439,876 - +0.4 439,876 - -1.4 439,876 - -1.1 439,876 - +1.2 439,876 - -1.6 439,876 - -0.5 439,876 - -0.2 439,881 + -0.1 439,881 + -0.2 439,881 + +0.3 439,881 + -0.3 439,881 + +0.4 439,881 + -0.7 439,881 + -0.3 439,881 + -0.5 439,881 + -0.9 439,881 + -1.9 439,882 - -0.1 439,882 - -1.8 439,882 - -0.7 439,882 - -0.6 439,882 - -1.4 439,882 - +0.8 439,882 - +0.9 439,882 - -1.1 439,882 - -0.5 439,882 - +1.2 439,882 - +0.3 439,882 - -2.4 439,882 - +0.2 439,882 - -0.0 439,882 - -1.3 439,882 - +0.6 439,882 - +0.7 439,882 - -0.0 440,215 + MPMX19_05721 0.24 -0.9 440,215 + MPMX19_05721 0.24 +0.1 440,215 + MPMX19_05721 0.24 -0.2 440,215 + MPMX19_05721 0.24 -1.3 440,215 + MPMX19_05721 0.24 -0.4 440,215 + MPMX19_05721 0.24 -0.3 440,215 + MPMX19_05721 0.24 -0.4 440,215 + MPMX19_05721 0.24 +0.8 440,215 + MPMX19_05721 0.24 -0.3 440,215 + MPMX19_05721 0.24 -0.2 440,215 + MPMX19_05721 0.24 +0.0 440,215 + MPMX19_05721 0.24 +0.3 440,215 + MPMX19_05721 0.24 +0.3 440,215 + MPMX19_05721 0.24 -1.4 440,215 + MPMX19_05721 0.24 -1.1 440,216 - MPMX19_05721 0.24 -1.2 440,216 - MPMX19_05721 0.24 -0.7 440,216 - MPMX19_05721 0.24 -1.4 440,216 - MPMX19_05721 0.24 -2.1 440,216 - MPMX19_05721 0.24 +0.7 440,216 - MPMX19_05721 0.24 -0.3 440,216 - MPMX19_05721 0.24 -0.3 440,216 - MPMX19_05721 0.24 -0.1 440,216 - MPMX19_05721 0.24 +0.0 440,216 - MPMX19_05721 0.24 -1.0 440,216 - MPMX19_05721 0.24 +0.1 440,216 - MPMX19_05721 0.24 +1.1 440,216 - MPMX19_05721 0.24 -0.6 440,216 - MPMX19_05721 0.24 +0.7 440,216 - MPMX19_05721 0.24 +0.1 440,216 - MPMX19_05721 0.24 -1.9 440,786 + MPMX19_05721 0.78 +1.6 440,880 - MPMX19_05721 0.87 -0.6
Or see this region's nucleotide sequence