Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05480 and MPMX19_05481 overlap by 4 nucleotides MPMX19_05481 and MPMX19_05482 are separated by 97 nucleotides MPMX19_05482 and MPMX19_05483 are separated by 11 nucleotides MPMX19_05483 and MPMX19_05484 are separated by 11 nucleotides MPMX19_05484 and MPMX19_05485 are separated by 9 nucleotides MPMX19_05485 and MPMX19_05486 are separated by 36 nucleotides
MPMX19_05480: MPMX19_05480 - hypothetical protein, at 183,134 to 184,273
_05480
MPMX19_05481: MPMX19_05481 - hypothetical protein, at 184,270 to 184,458
_05481
MPMX19_05482: MPMX19_05482 - hypothetical protein, at 184,556 to 184,882
_05482
MPMX19_05483: MPMX19_05483 - hypothetical protein, at 184,894 to 185,157
_05483
MPMX19_05484: MPMX19_05484 - hypothetical protein, at 185,169 to 185,516
_05484
MPMX19_05485: MPMX19_05485 - hypothetical protein, at 185,526 to 185,969
_05485
MPMX19_05486: MPMX19_05486 - Flavin-dependent monooxygenase, at 186,006 to 187,148
_05486
Position (kb) 184
185
186 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 183.932 kb on + strand, within MPMX19_05480 at 183.933 kb on - strand, within MPMX19_05480 at 183.947 kb on + strand, within MPMX19_05480 at 183.947 kb on + strand, within MPMX19_05480 at 183.947 kb on + strand, within MPMX19_05480 at 183.947 kb on + strand, within MPMX19_05480 at 183.947 kb on + strand, within MPMX19_05480 at 183.947 kb on + strand, within MPMX19_05480 at 183.947 kb on + strand, within MPMX19_05480 at 183.948 kb on - strand, within MPMX19_05480 at 183.948 kb on - strand, within MPMX19_05480 at 183.948 kb on - strand, within MPMX19_05480 at 183.948 kb on - strand, within MPMX19_05480 at 184.073 kb on + strand, within MPMX19_05480 at 184.073 kb on + strand, within MPMX19_05480 at 184.073 kb on + strand, within MPMX19_05480 at 184.073 kb on + strand, within MPMX19_05480 at 184.073 kb on + strand, within MPMX19_05480 at 184.073 kb on + strand, within MPMX19_05480 at 184.073 kb on + strand, within MPMX19_05480 at 184.073 kb on + strand, within MPMX19_05480 at 184.073 kb on + strand, within MPMX19_05480 at 184.073 kb on + strand, within MPMX19_05480 at 184.073 kb on + strand, within MPMX19_05480 at 184.073 kb on + strand, within MPMX19_05480 at 184.073 kb on + strand, within MPMX19_05480 at 184.073 kb on + strand, within MPMX19_05480 at 184.073 kb on + strand, within MPMX19_05480 at 184.073 kb on + strand, within MPMX19_05480 at 184.073 kb on + strand, within MPMX19_05480 at 184.073 kb on + strand, within MPMX19_05480 at 184.074 kb on - strand, within MPMX19_05480 at 184.074 kb on - strand, within MPMX19_05480 at 184.074 kb on - strand, within MPMX19_05480 at 184.074 kb on - strand, within MPMX19_05480 at 184.074 kb on - strand, within MPMX19_05480 at 184.074 kb on - strand, within MPMX19_05480 at 184.074 kb on - strand, within MPMX19_05480 at 184.074 kb on - strand, within MPMX19_05480 at 184.074 kb on - strand, within MPMX19_05480 at 184.074 kb on - strand, within MPMX19_05480 at 184.074 kb on - strand, within MPMX19_05480 at 184.074 kb on - strand, within MPMX19_05480 at 184.074 kb on - strand, within MPMX19_05480 at 184.074 kb on - strand, within MPMX19_05480 at 184.074 kb on - strand, within MPMX19_05480 at 184.074 kb on - strand, within MPMX19_05480 at 184.074 kb on - strand, within MPMX19_05480 at 184.074 kb on - strand, within MPMX19_05480 at 184.264 kb on + strand at 184.264 kb on + strand at 184.264 kb on + strand at 184.264 kb on + strand at 184.265 kb on - strand at 184.265 kb on - strand at 184.265 kb on - strand at 184.265 kb on - strand at 184.522 kb on - strand at 184.522 kb on - strand at 184.525 kb on + strand at 184.525 kb on + strand at 184.525 kb on + strand at 184.526 kb on - strand at 184.526 kb on - strand at 184.533 kb on + strand at 184.533 kb on + strand at 184.536 kb on + strand at 184.536 kb on + strand at 184.537 kb on - strand at 184.537 kb on - strand at 184.655 kb on + strand, within MPMX19_05482 at 184.655 kb on + strand, within MPMX19_05482 at 184.655 kb on + strand, within MPMX19_05482 at 184.655 kb on + strand, within MPMX19_05482 at 184.655 kb on + strand, within MPMX19_05482 at 184.655 kb on + strand, within MPMX19_05482 at 184.655 kb on + strand, within MPMX19_05482 at 184.655 kb on + strand, within MPMX19_05482 at 184.655 kb on + strand, within MPMX19_05482 at 184.655 kb on + strand, within MPMX19_05482 at 184.655 kb on + strand, within MPMX19_05482 at 184.655 kb on + strand, within MPMX19_05482 at 184.655 kb on + strand, within MPMX19_05482 at 184.655 kb on + strand, within MPMX19_05482 at 184.655 kb on + strand, within MPMX19_05482 at 184.655 kb on + strand, within MPMX19_05482 at 184.655 kb on + strand, within MPMX19_05482 at 184.655 kb on + strand, within MPMX19_05482 at 184.656 kb on - strand, within MPMX19_05482 at 184.656 kb on - strand, within MPMX19_05482 at 184.656 kb on - strand, within MPMX19_05482 at 184.656 kb on - strand, within MPMX19_05482 at 184.656 kb on - strand, within MPMX19_05482 at 184.656 kb on - strand, within MPMX19_05482 at 184.656 kb on - strand, within MPMX19_05482 at 184.656 kb on - strand, within MPMX19_05482 at 184.656 kb on - strand, within MPMX19_05482 at 184.656 kb on - strand, within MPMX19_05482 at 184.656 kb on - strand, within MPMX19_05482 at 184.656 kb on - strand, within MPMX19_05482 at 184.656 kb on - strand, within MPMX19_05482 at 184.656 kb on - strand, within MPMX19_05482 at 184.656 kb on - strand, within MPMX19_05482 at 184.656 kb on - strand, within MPMX19_05482 at 184.656 kb on - strand, within MPMX19_05482 at 184.656 kb on - strand, within MPMX19_05482 at 184.656 kb on - strand, within MPMX19_05482 at 184.912 kb on + strand at 184.912 kb on + strand at 184.913 kb on - strand at 184.913 kb on - strand at 184.913 kb on - strand at 184.913 kb on - strand at 184.926 kb on + strand, within MPMX19_05483 at 184.926 kb on + strand, within MPMX19_05483 at 184.926 kb on + strand, within MPMX19_05483 at 184.926 kb on + strand, within MPMX19_05483 at 184.927 kb on - strand, within MPMX19_05483 at 184.927 kb on - strand, within MPMX19_05483 at 184.927 kb on - strand, within MPMX19_05483 at 184.927 kb on - strand, within MPMX19_05483 at 184.972 kb on + strand, within MPMX19_05483 at 184.972 kb on + strand, within MPMX19_05483 at 184.972 kb on + strand, within MPMX19_05483 at 184.972 kb on + strand, within MPMX19_05483 at 185.023 kb on + strand, within MPMX19_05483 at 185.023 kb on + strand, within MPMX19_05483 at 185.023 kb on + strand, within MPMX19_05483 at 185.023 kb on + strand, within MPMX19_05483 at 185.023 kb on + strand, within MPMX19_05483 at 185.024 kb on - strand, within MPMX19_05483 at 185.204 kb on + strand, within MPMX19_05484 at 185.227 kb on + strand, within MPMX19_05484 at 185.227 kb on + strand, within MPMX19_05484 at 185.228 kb on - strand, within MPMX19_05484 at 185.228 kb on - strand, within MPMX19_05484 at 185.228 kb on - strand, within MPMX19_05484 at 185.228 kb on - strand, within MPMX19_05484 at 185.262 kb on - strand, within MPMX19_05484 at 185.367 kb on + strand, within MPMX19_05484 at 185.367 kb on + strand, within MPMX19_05484 at 185.367 kb on + strand, within MPMX19_05484 at 185.367 kb on + strand, within MPMX19_05484 at 185.367 kb on + strand, within MPMX19_05484 at 185.367 kb on + strand, within MPMX19_05484 at 185.367 kb on + strand, within MPMX19_05484 at 185.367 kb on + strand, within MPMX19_05484 at 185.367 kb on + strand, within MPMX19_05484 at 185.367 kb on + strand, within MPMX19_05484 at 185.367 kb on + strand, within MPMX19_05484 at 185.367 kb on + strand, within MPMX19_05484 at 185.367 kb on + strand, within MPMX19_05484 at 185.367 kb on + strand, within MPMX19_05484 at 185.367 kb on + strand, within MPMX19_05484 at 185.367 kb on + strand, within MPMX19_05484 at 185.367 kb on + strand, within MPMX19_05484 at 185.367 kb on + strand, within MPMX19_05484 at 185.368 kb on - strand, within MPMX19_05484 at 185.368 kb on - strand, within MPMX19_05484 at 185.368 kb on - strand, within MPMX19_05484 at 185.368 kb on - strand, within MPMX19_05484 at 185.368 kb on - strand, within MPMX19_05484 at 185.368 kb on - strand, within MPMX19_05484 at 185.368 kb on - strand, within MPMX19_05484 at 185.368 kb on - strand, within MPMX19_05484 at 185.532 kb on + strand at 185.532 kb on + strand at 185.532 kb on + strand at 185.532 kb on + strand at 185.532 kb on + strand at 185.532 kb on + strand at 185.532 kb on + strand at 185.532 kb on + strand at 185.532 kb on + strand at 185.532 kb on + strand at 185.532 kb on + strand at 185.532 kb on + strand at 185.532 kb on + strand at 185.532 kb on + strand at 185.532 kb on + strand at 185.532 kb on + strand at 185.532 kb on + strand at 185.532 kb on + strand at 185.532 kb on + strand at 185.532 kb on + strand at 185.532 kb on + strand at 185.532 kb on + strand at 185.532 kb on + strand at 185.532 kb on + strand at 185.533 kb on - strand at 185.533 kb on - strand at 185.533 kb on - strand at 185.533 kb on - strand at 185.533 kb on - strand at 185.533 kb on - strand at 185.533 kb on - strand at 185.533 kb on - strand at 185.533 kb on - strand at 186.148 kb on + strand, within MPMX19_05486 at 186.148 kb on + strand, within MPMX19_05486 at 186.148 kb on + strand, within MPMX19_05486 at 186.149 kb on - strand, within MPMX19_05486 at 186.149 kb on - strand, within MPMX19_05486
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 183,932 + MPMX19_05480 0.70 +0.3 183,933 - MPMX19_05480 0.70 +0.5 183,947 + MPMX19_05480 0.71 -0.6 183,947 + MPMX19_05480 0.71 -0.2 183,947 + MPMX19_05480 0.71 -0.2 183,947 + MPMX19_05480 0.71 +0.5 183,947 + MPMX19_05480 0.71 -1.7 183,947 + MPMX19_05480 0.71 -0.5 183,947 + MPMX19_05480 0.71 +0.6 183,948 - MPMX19_05480 0.71 -0.2 183,948 - MPMX19_05480 0.71 +0.4 183,948 - MPMX19_05480 0.71 +1.1 183,948 - MPMX19_05480 0.71 +0.3 184,073 + MPMX19_05480 0.82 -1.4 184,073 + MPMX19_05480 0.82 -0.7 184,073 + MPMX19_05480 0.82 +0.8 184,073 + MPMX19_05480 0.82 -0.7 184,073 + MPMX19_05480 0.82 +0.1 184,073 + MPMX19_05480 0.82 -1.4 184,073 + MPMX19_05480 0.82 +0.8 184,073 + MPMX19_05480 0.82 -1.2 184,073 + MPMX19_05480 0.82 -1.3 184,073 + MPMX19_05480 0.82 -1.0 184,073 + MPMX19_05480 0.82 +1.0 184,073 + MPMX19_05480 0.82 -0.9 184,073 + MPMX19_05480 0.82 +0.4 184,073 + MPMX19_05480 0.82 +0.1 184,073 + MPMX19_05480 0.82 +0.0 184,073 + MPMX19_05480 0.82 -0.8 184,073 + MPMX19_05480 0.82 -1.5 184,073 + MPMX19_05480 0.82 -0.9 184,074 - MPMX19_05480 0.82 -0.6 184,074 - MPMX19_05480 0.82 +0.1 184,074 - MPMX19_05480 0.82 -1.5 184,074 - MPMX19_05480 0.82 -0.3 184,074 - MPMX19_05480 0.82 -0.3 184,074 - MPMX19_05480 0.82 +0.4 184,074 - MPMX19_05480 0.82 -0.1 184,074 - MPMX19_05480 0.82 -0.0 184,074 - MPMX19_05480 0.82 +1.0 184,074 - MPMX19_05480 0.82 +0.1 184,074 - MPMX19_05480 0.82 +0.3 184,074 - MPMX19_05480 0.82 +0.2 184,074 - MPMX19_05480 0.82 +0.3 184,074 - MPMX19_05480 0.82 +0.2 184,074 - MPMX19_05480 0.82 +0.1 184,074 - MPMX19_05480 0.82 +0.3 184,074 - MPMX19_05480 0.82 +1.2 184,074 - MPMX19_05480 0.82 +1.4 184,264 + +0.0 184,264 + -0.9 184,264 + -1.9 184,264 + -0.3 184,265 - -1.2 184,265 - +0.4 184,265 - -0.9 184,265 - -1.3 184,522 - -0.2 184,522 - -0.3 184,525 + -2.0 184,525 + -0.6 184,525 + +0.1 184,526 - +0.6 184,526 - +0.1 184,533 + -1.1 184,533 + +1.4 184,536 + +0.6 184,536 + -2.4 184,537 - -1.4 184,537 - -0.3 184,655 + MPMX19_05482 0.30 +0.1 184,655 + MPMX19_05482 0.30 +1.0 184,655 + MPMX19_05482 0.30 +0.1 184,655 + MPMX19_05482 0.30 +0.0 184,655 + MPMX19_05482 0.30 -0.5 184,655 + MPMX19_05482 0.30 -0.7 184,655 + MPMX19_05482 0.30 +0.4 184,655 + MPMX19_05482 0.30 -0.6 184,655 + MPMX19_05482 0.30 +0.6 184,655 + MPMX19_05482 0.30 -0.8 184,655 + MPMX19_05482 0.30 -2.3 184,655 + MPMX19_05482 0.30 +0.3 184,655 + MPMX19_05482 0.30 -0.2 184,655 + MPMX19_05482 0.30 -0.6 184,655 + MPMX19_05482 0.30 -0.3 184,655 + MPMX19_05482 0.30 -0.2 184,655 + MPMX19_05482 0.30 +0.8 184,655 + MPMX19_05482 0.30 -0.2 184,656 - MPMX19_05482 0.31 -0.3 184,656 - MPMX19_05482 0.31 +0.1 184,656 - MPMX19_05482 0.31 +0.7 184,656 - MPMX19_05482 0.31 -1.6 184,656 - MPMX19_05482 0.31 -0.8 184,656 - MPMX19_05482 0.31 -0.2 184,656 - MPMX19_05482 0.31 +0.1 184,656 - MPMX19_05482 0.31 -0.4 184,656 - MPMX19_05482 0.31 -1.0 184,656 - MPMX19_05482 0.31 +1.1 184,656 - MPMX19_05482 0.31 -0.2 184,656 - MPMX19_05482 0.31 -2.0 184,656 - MPMX19_05482 0.31 -1.4 184,656 - MPMX19_05482 0.31 -1.7 184,656 - MPMX19_05482 0.31 -1.3 184,656 - MPMX19_05482 0.31 +0.6 184,656 - MPMX19_05482 0.31 -1.2 184,656 - MPMX19_05482 0.31 +1.3 184,656 - MPMX19_05482 0.31 -0.5 184,912 + -1.2 184,912 + +0.0 184,913 - +0.0 184,913 - +0.4 184,913 - +0.8 184,913 - -0.3 184,926 + MPMX19_05483 0.12 +0.1 184,926 + MPMX19_05483 0.12 -0.7 184,926 + MPMX19_05483 0.12 -0.7 184,926 + MPMX19_05483 0.12 -0.9 184,927 - MPMX19_05483 0.12 -0.6 184,927 - MPMX19_05483 0.12 -1.6 184,927 - MPMX19_05483 0.12 -1.7 184,927 - MPMX19_05483 0.12 -0.9 184,972 + MPMX19_05483 0.30 -2.0 184,972 + MPMX19_05483 0.30 +2.8 184,972 + MPMX19_05483 0.30 +0.4 184,972 + MPMX19_05483 0.30 -1.6 185,023 + MPMX19_05483 0.49 -0.3 185,023 + MPMX19_05483 0.49 -0.9 185,023 + MPMX19_05483 0.49 +0.0 185,023 + MPMX19_05483 0.49 -1.3 185,023 + MPMX19_05483 0.49 -0.5 185,024 - MPMX19_05483 0.49 -0.0 185,204 + MPMX19_05484 0.10 +0.3 185,227 + MPMX19_05484 0.17 +0.6 185,227 + MPMX19_05484 0.17 -1.6 185,228 - MPMX19_05484 0.17 -1.1 185,228 - MPMX19_05484 0.17 -1.3 185,228 - MPMX19_05484 0.17 +0.6 185,228 - MPMX19_05484 0.17 -0.4 185,262 - MPMX19_05484 0.27 -1.3 185,367 + MPMX19_05484 0.57 -1.4 185,367 + MPMX19_05484 0.57 -0.1 185,367 + MPMX19_05484 0.57 -0.3 185,367 + MPMX19_05484 0.57 -0.9 185,367 + MPMX19_05484 0.57 +1.4 185,367 + MPMX19_05484 0.57 +0.3 185,367 + MPMX19_05484 0.57 +0.1 185,367 + MPMX19_05484 0.57 -0.6 185,367 + MPMX19_05484 0.57 +0.7 185,367 + MPMX19_05484 0.57 +0.1 185,367 + MPMX19_05484 0.57 -0.5 185,367 + MPMX19_05484 0.57 +0.2 185,367 + MPMX19_05484 0.57 -2.6 185,367 + MPMX19_05484 0.57 +0.1 185,367 + MPMX19_05484 0.57 -1.2 185,367 + MPMX19_05484 0.57 -0.3 185,367 + MPMX19_05484 0.57 +0.8 185,367 + MPMX19_05484 0.57 +0.1 185,368 - MPMX19_05484 0.57 -0.4 185,368 - MPMX19_05484 0.57 +0.8 185,368 - MPMX19_05484 0.57 -1.2 185,368 - MPMX19_05484 0.57 -0.9 185,368 - MPMX19_05484 0.57 -0.0 185,368 - MPMX19_05484 0.57 +1.1 185,368 - MPMX19_05484 0.57 -0.9 185,368 - MPMX19_05484 0.57 +1.3 185,532 + -1.4 185,532 + +1.0 185,532 + -1.3 185,532 + -0.3 185,532 + -1.6 185,532 + +0.7 185,532 + +0.9 185,532 + +0.2 185,532 + -1.2 185,532 + +0.2 185,532 + -0.6 185,532 + -2.2 185,532 + -0.8 185,532 + -0.4 185,532 + +0.7 185,532 + -1.1 185,532 + -0.9 185,532 + -0.6 185,532 + +0.1 185,532 + -1.0 185,532 + -1.4 185,532 + -1.0 185,532 + -0.6 185,532 + +0.0 185,533 - -0.7 185,533 - -0.6 185,533 - -0.9 185,533 - -1.9 185,533 - +0.7 185,533 - +0.7 185,533 - +0.6 185,533 - +1.4 185,533 - -0.7 186,148 + MPMX19_05486 0.12 +1.3 186,148 + MPMX19_05486 0.12 -1.3 186,148 + MPMX19_05486 0.12 +0.5 186,149 - MPMX19_05486 0.13 +1.3 186,149 - MPMX19_05486 0.13 +0.2
Or see this region's nucleotide sequence