Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05466

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05465 and MPMX19_05466 are separated by 656 nucleotides MPMX19_05465: MPMX19_05465 - IS5 family transposase ISAzs10, at 160,301 to 161,377 _05465 MPMX19_05466: MPMX19_05466 - hypothetical protein, at 162,034 to 163,674 _05466 Position (kb) 162 163 164Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 161.502 kb on + strandat 161.502 kb on + strandat 161.502 kb on + strandat 161.502 kb on + strandat 161.526 kb on + strandat 161.526 kb on + strandat 161.539 kb on + strandat 161.539 kb on + strandat 161.575 kb on + strandat 161.576 kb on - strandat 161.576 kb on - strandat 161.622 kb on + strandat 161.681 kb on + strandat 161.681 kb on + strandat 161.681 kb on + strandat 161.681 kb on + strandat 161.682 kb on - strandat 161.682 kb on - strandat 161.682 kb on - strandat 161.733 kb on + strandat 161.733 kb on + strandat 161.733 kb on + strandat 161.734 kb on - strandat 161.734 kb on - strandat 161.750 kb on + strandat 161.751 kb on - strandat 161.751 kb on - strandat 161.751 kb on - strandat 161.768 kb on + strandat 161.768 kb on + strandat 161.768 kb on + strandat 161.768 kb on + strandat 161.768 kb on + strandat 161.768 kb on + strandat 161.768 kb on + strandat 161.769 kb on - strandat 161.769 kb on - strandat 161.769 kb on - strandat 161.769 kb on - strandat 161.769 kb on - strandat 161.769 kb on - strandat 161.769 kb on - strandat 161.769 kb on - strandat 161.769 kb on - strandat 161.786 kb on - strandat 161.786 kb on - strandat 161.848 kb on + strandat 161.848 kb on + strandat 161.848 kb on + strandat 161.848 kb on + strandat 161.848 kb on + strandat 161.848 kb on + strandat 161.849 kb on - strandat 161.849 kb on - strandat 161.849 kb on - strandat 161.849 kb on - strandat 161.849 kb on - strandat 162.009 kb on + strandat 162.009 kb on + strandat 162.010 kb on - strandat 162.010 kb on - strandat 162.015 kb on + strandat 162.015 kb on + strandat 162.016 kb on - strandat 162.016 kb on - strandat 162.036 kb on - strandat 162.036 kb on - strandat 162.036 kb on - strandat 162.067 kb on + strandat 162.151 kb on + strandat 162.321 kb on + strand, within MPMX19_05466at 162.343 kb on + strand, within MPMX19_05466at 162.343 kb on + strand, within MPMX19_05466at 162.425 kb on + strand, within MPMX19_05466at 162.498 kb on - strand, within MPMX19_05466at 162.577 kb on + strand, within MPMX19_05466at 162.578 kb on - strand, within MPMX19_05466at 162.621 kb on + strand, within MPMX19_05466at 162.621 kb on + strand, within MPMX19_05466at 162.754 kb on + strand, within MPMX19_05466at 162.754 kb on + strand, within MPMX19_05466at 162.756 kb on + strand, within MPMX19_05466at 162.756 kb on + strand, within MPMX19_05466at 162.757 kb on - strand, within MPMX19_05466at 162.769 kb on + strand, within MPMX19_05466at 162.770 kb on - strand, within MPMX19_05466at 162.772 kb on - strand, within MPMX19_05466at 162.779 kb on + strand, within MPMX19_05466at 162.780 kb on - strand, within MPMX19_05466at 162.932 kb on - strand, within MPMX19_05466at 162.932 kb on - strand, within MPMX19_05466at 162.952 kb on - strand, within MPMX19_05466at 163.010 kb on + strand, within MPMX19_05466at 163.010 kb on + strand, within MPMX19_05466at 163.011 kb on - strand, within MPMX19_05466at 163.068 kb on + strand, within MPMX19_05466at 163.068 kb on + strand, within MPMX19_05466at 163.118 kb on + strand, within MPMX19_05466at 163.118 kb on + strand, within MPMX19_05466at 163.119 kb on - strand, within MPMX19_05466at 163.123 kb on + strand, within MPMX19_05466at 163.123 kb on + strand, within MPMX19_05466at 163.124 kb on - strand, within MPMX19_05466at 163.233 kb on + strand, within MPMX19_05466at 163.233 kb on + strand, within MPMX19_05466at 163.233 kb on + strand, within MPMX19_05466at 163.233 kb on + strand, within MPMX19_05466at 163.291 kb on - strand, within MPMX19_05466at 163.291 kb on - strand, within MPMX19_05466at 163.291 kb on - strand, within MPMX19_05466at 163.320 kb on + strand, within MPMX19_05466at 163.320 kb on + strand, within MPMX19_05466at 163.321 kb on - strand, within MPMX19_05466at 163.330 kb on - strand, within MPMX19_05466at 163.453 kb on + strand, within MPMX19_05466at 163.453 kb on + strand, within MPMX19_05466at 163.453 kb on + strand, within MPMX19_05466at 163.454 kb on - strand, within MPMX19_05466at 163.454 kb on - strand, within MPMX19_05466at 163.462 kb on + strand, within MPMX19_05466at 163.462 kb on + strand, within MPMX19_05466at 163.462 kb on + strand, within MPMX19_05466at 163.463 kb on - strand, within MPMX19_05466at 163.463 kb on - strand, within MPMX19_05466at 163.574 kb on + strandat 163.574 kb on + strandat 163.577 kb on + strandat 163.577 kb on + strandat 163.577 kb on + strandat 163.577 kb on + strandat 163.577 kb on + strandat 163.577 kb on + strandat 163.577 kb on + strandat 163.577 kb on + strandat 163.577 kb on + strandat 163.577 kb on + strandat 163.577 kb on + strandat 163.577 kb on + strandat 163.577 kb on + strandat 163.577 kb on + strandat 163.577 kb on + strandat 163.577 kb on + strandat 163.577 kb on + strandat 163.577 kb on + strandat 163.577 kb on + strandat 163.577 kb on + strandat 163.577 kb on + strandat 163.578 kb on - strandat 163.578 kb on - strandat 163.578 kb on - strandat 163.578 kb on - strandat 163.578 kb on - strandat 163.578 kb on - strandat 163.578 kb on - strandat 163.578 kb on - strandat 163.578 kb on - strandat 163.578 kb on - strandat 163.578 kb on - strandat 163.578 kb on - strandat 163.609 kb on - strandat 163.658 kb on - strandat 163.701 kb on - strandat 163.701 kb on - strandat 163.701 kb on - strandat 163.710 kb on - strandat 163.710 kb on - strandat 163.710 kb on - strandat 164.555 kb on + strandat 164.555 kb on + strandat 164.555 kb on + strandat 164.555 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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161,502 + -0.7
161,502 + +1.9
161,502 + -0.9
161,502 + -0.1
161,526 + +1.2
161,526 + -0.6
161,539 + -0.6
161,539 + -0.6
161,575 + -0.6
161,576 - -0.6
161,576 - +0.1
161,622 + -2.7
161,681 + -2.4
161,681 + -0.6
161,681 + -1.6
161,681 + -0.7
161,682 - +1.1
161,682 - -0.4
161,682 - +0.2
161,733 + +1.4
161,733 + -0.5
161,733 + +0.0
161,734 - -1.9
161,734 - -0.4
161,750 + +0.3
161,751 - -0.2
161,751 - -0.4
161,751 - +0.5
161,768 + -1.0
161,768 + +0.1
161,768 + -0.7
161,768 + +0.4
161,768 + -2.4
161,768 + -0.4
161,768 + +0.1
161,769 - +0.3
161,769 - +0.1
161,769 - -0.6
161,769 - -0.2
161,769 - -0.3
161,769 - -0.9
161,769 - -0.9
161,769 - -1.6
161,769 - +0.3
161,786 - +0.3
161,786 - -1.9
161,848 + +0.8
161,848 + -0.8
161,848 + -0.0
161,848 + -0.6
161,848 + -1.4
161,848 + -0.2
161,849 - -0.3
161,849 - -1.7
161,849 - -2.9
161,849 - +0.6
161,849 - -3.1
162,009 + -0.2
162,009 + +1.1
162,010 - -0.8
162,010 - -0.5
162,015 + -1.1
162,015 + +0.4
162,016 - +1.0
162,016 - +0.3
162,036 - -0.7
162,036 - -0.2
162,036 - -0.3
162,067 + -0.2
162,151 + -0.1
162,321 + MPMX19_05466 0.17 -0.6
162,343 + MPMX19_05466 0.19 +1.4
162,343 + MPMX19_05466 0.19 -1.0
162,425 + MPMX19_05466 0.24 -1.2
162,498 - MPMX19_05466 0.28 -1.6
162,577 + MPMX19_05466 0.33 +0.4
162,578 - MPMX19_05466 0.33 -1.3
162,621 + MPMX19_05466 0.36 -0.3
162,621 + MPMX19_05466 0.36 -0.4
162,754 + MPMX19_05466 0.44 -2.2
162,754 + MPMX19_05466 0.44 -0.8
162,756 + MPMX19_05466 0.44 -0.4
162,756 + MPMX19_05466 0.44 -0.7
162,757 - MPMX19_05466 0.44 -1.7
162,769 + MPMX19_05466 0.45 +0.5
162,770 - MPMX19_05466 0.45 -0.9
162,772 - MPMX19_05466 0.45 -0.2
162,779 + MPMX19_05466 0.45 -0.2
162,780 - MPMX19_05466 0.45 -2.7
162,932 - MPMX19_05466 0.55 -0.1
162,932 - MPMX19_05466 0.55 -1.7
162,952 - MPMX19_05466 0.56 -1.4
163,010 + MPMX19_05466 0.59 -1.7
163,010 + MPMX19_05466 0.59 +0.0
163,011 - MPMX19_05466 0.60 -0.1
163,068 + MPMX19_05466 0.63 -0.4
163,068 + MPMX19_05466 0.63 +1.1
163,118 + MPMX19_05466 0.66 +0.4
163,118 + MPMX19_05466 0.66 +0.8
163,119 - MPMX19_05466 0.66 -1.4
163,123 + MPMX19_05466 0.66 +0.4
163,123 + MPMX19_05466 0.66 -2.3
163,124 - MPMX19_05466 0.66 +0.1
163,233 + MPMX19_05466 0.73 -0.6
163,233 + MPMX19_05466 0.73 -1.5
163,233 + MPMX19_05466 0.73 -0.2
163,233 + MPMX19_05466 0.73 +0.6
163,291 - MPMX19_05466 0.77 -0.9
163,291 - MPMX19_05466 0.77 +0.6
163,291 - MPMX19_05466 0.77 -1.2
163,320 + MPMX19_05466 0.78 -0.9
163,320 + MPMX19_05466 0.78 -0.6
163,321 - MPMX19_05466 0.78 -0.8
163,330 - MPMX19_05466 0.79 +0.3
163,453 + MPMX19_05466 0.86 -0.1
163,453 + MPMX19_05466 0.86 +1.0
163,453 + MPMX19_05466 0.86 -0.3
163,454 - MPMX19_05466 0.87 -1.3
163,454 - MPMX19_05466 0.87 +0.1
163,462 + MPMX19_05466 0.87 -2.0
163,462 + MPMX19_05466 0.87 -0.2
163,462 + MPMX19_05466 0.87 -2.2
163,463 - MPMX19_05466 0.87 -0.9
163,463 - MPMX19_05466 0.87 -0.8
163,574 + -2.3
163,574 + -1.7
163,577 + -1.4
163,577 + -0.3
163,577 + -2.6
163,577 + -1.4
163,577 + +0.4
163,577 + +1.0
163,577 + -0.1
163,577 + -1.9
163,577 + +1.6
163,577 + -1.3
163,577 + -0.3
163,577 + -1.9
163,577 + +0.7
163,577 + -0.7
163,577 + -0.5
163,577 + -0.2
163,577 + -2.9
163,577 + -1.6
163,577 + -1.7
163,577 + -0.9
163,577 + -0.6
163,578 - -0.6
163,578 - +0.2
163,578 - -1.4
163,578 - -2.0
163,578 - -1.9
163,578 - +0.1
163,578 - -0.4
163,578 - +2.0
163,578 - +1.4
163,578 - +0.9
163,578 - -0.9
163,578 - +0.4
163,609 - -0.6
163,658 - -0.5
163,701 - -0.2
163,701 - -0.7
163,701 - -0.2
163,710 - -1.7
163,710 - -2.3
163,710 - -0.2
164,555 + +1.0
164,555 + +0.4
164,555 + -1.7
164,555 + +0.2

Or see this region's nucleotide sequence