Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05429 and MPMX19_05430 are separated by 62 nucleotides MPMX19_05430 and MPMX19_05431 are separated by 142 nucleotides
MPMX19_05429: MPMX19_05429 - Riboflavin transporter RibZ, at 120,520 to 121,953
_05429
MPMX19_05430: MPMX19_05430 - HTH-type transcriptional regulator DmlR, at 122,016 to 122,933
_05430
MPMX19_05431: MPMX19_05431 - 1-deoxyxylulose-5-phosphate synthase YajO, at 123,076 to 124,110
_05431
Position (kb) 122
123 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 121.210 kb on + strand, within MPMX19_05429 at 121.210 kb on + strand, within MPMX19_05429 at 121.210 kb on + strand, within MPMX19_05429 at 121.210 kb on + strand, within MPMX19_05429 at 121.210 kb on + strand, within MPMX19_05429 at 121.210 kb on + strand, within MPMX19_05429 at 121.211 kb on - strand, within MPMX19_05429 at 121.211 kb on - strand, within MPMX19_05429 at 121.211 kb on - strand, within MPMX19_05429 at 121.211 kb on - strand, within MPMX19_05429 at 121.211 kb on - strand, within MPMX19_05429 at 121.211 kb on - strand, within MPMX19_05429 at 121.211 kb on - strand, within MPMX19_05429 at 121.642 kb on + strand, within MPMX19_05429 at 121.643 kb on - strand, within MPMX19_05429 at 121.643 kb on - strand, within MPMX19_05429 at 121.643 kb on - strand, within MPMX19_05429 at 121.643 kb on - strand, within MPMX19_05429 at 121.643 kb on - strand, within MPMX19_05429 at 122.051 kb on + strand at 122.051 kb on + strand at 122.051 kb on + strand at 122.052 kb on - strand at 122.052 kb on - strand at 122.104 kb on + strand at 122.104 kb on + strand at 122.419 kb on + strand, within MPMX19_05430 at 122.419 kb on + strand, within MPMX19_05430 at 122.419 kb on + strand, within MPMX19_05430 at 122.419 kb on + strand, within MPMX19_05430 at 122.420 kb on - strand, within MPMX19_05430 at 122.985 kb on + strand at 122.985 kb on + strand at 122.985 kb on + strand at 122.985 kb on + strand at 122.986 kb on - strand at 122.986 kb on - strand at 123.008 kb on + strand at 123.008 kb on + strand at 123.008 kb on + strand at 123.008 kb on + strand at 123.008 kb on + strand at 123.008 kb on + strand at 123.008 kb on + strand at 123.008 kb on + strand at 123.008 kb on + strand at 123.008 kb on + strand at 123.008 kb on + strand at 123.008 kb on + strand at 123.009 kb on - strand at 123.009 kb on - strand at 123.009 kb on - strand at 123.009 kb on - strand at 123.009 kb on - strand at 123.009 kb on - strand at 123.009 kb on - strand at 123.009 kb on - strand at 123.009 kb on - strand at 123.009 kb on - strand at 123.009 kb on - strand at 123.010 kb on + strand at 123.010 kb on + strand at 123.010 kb on + strand at 123.010 kb on + strand at 123.010 kb on + strand at 123.010 kb on + strand at 123.011 kb on - strand at 123.011 kb on - strand at 123.011 kb on - strand at 123.011 kb on - strand at 123.011 kb on - strand at 123.011 kb on - strand at 123.011 kb on - strand at 123.011 kb on - strand at 123.011 kb on - strand at 123.011 kb on - strand at 123.259 kb on + strand, within MPMX19_05431 at 123.260 kb on - strand, within MPMX19_05431 at 123.260 kb on - strand, within MPMX19_05431 at 123.260 kb on - strand, within MPMX19_05431 at 123.260 kb on - strand, within MPMX19_05431 at 123.436 kb on + strand, within MPMX19_05431 at 123.436 kb on + strand, within MPMX19_05431 at 123.436 kb on + strand, within MPMX19_05431 at 123.436 kb on + strand, within MPMX19_05431 at 123.436 kb on + strand, within MPMX19_05431 at 123.436 kb on + strand, within MPMX19_05431 at 123.436 kb on + strand, within MPMX19_05431 at 123.436 kb on + strand, within MPMX19_05431 at 123.436 kb on + strand, within MPMX19_05431 at 123.436 kb on + strand, within MPMX19_05431 at 123.436 kb on + strand, within MPMX19_05431 at 123.436 kb on + strand, within MPMX19_05431 at 123.437 kb on - strand, within MPMX19_05431 at 123.437 kb on - strand, within MPMX19_05431 at 123.437 kb on - strand, within MPMX19_05431 at 123.437 kb on - strand, within MPMX19_05431 at 123.437 kb on - strand, within MPMX19_05431 at 123.437 kb on - strand, within MPMX19_05431 at 123.437 kb on - strand, within MPMX19_05431 at 123.437 kb on - strand, within MPMX19_05431 at 123.437 kb on - strand, within MPMX19_05431 at 123.437 kb on - strand, within MPMX19_05431 at 123.437 kb on - strand, within MPMX19_05431 at 123.438 kb on + strand, within MPMX19_05431 at 123.438 kb on + strand, within MPMX19_05431 at 123.438 kb on + strand, within MPMX19_05431 at 123.438 kb on + strand, within MPMX19_05431 at 123.438 kb on + strand, within MPMX19_05431 at 123.438 kb on + strand, within MPMX19_05431 at 123.439 kb on - strand, within MPMX19_05431 at 123.439 kb on - strand, within MPMX19_05431 at 123.535 kb on + strand, within MPMX19_05431 at 123.535 kb on + strand, within MPMX19_05431 at 123.535 kb on + strand, within MPMX19_05431 at 123.535 kb on + strand, within MPMX19_05431 at 123.535 kb on + strand, within MPMX19_05431 at 123.535 kb on + strand, within MPMX19_05431 at 123.535 kb on + strand, within MPMX19_05431 at 123.535 kb on + strand, within MPMX19_05431 at 123.535 kb on + strand, within MPMX19_05431 at 123.535 kb on + strand, within MPMX19_05431 at 123.536 kb on - strand, within MPMX19_05431 at 123.536 kb on - strand, within MPMX19_05431 at 123.536 kb on - strand, within MPMX19_05431 at 123.536 kb on - strand, within MPMX19_05431 at 123.536 kb on - strand, within MPMX19_05431 at 123.536 kb on - strand, within MPMX19_05431 at 123.631 kb on + strand, within MPMX19_05431 at 123.631 kb on + strand, within MPMX19_05431 at 123.631 kb on + strand, within MPMX19_05431 at 123.631 kb on + strand, within MPMX19_05431 at 123.631 kb on + strand, within MPMX19_05431 at 123.631 kb on + strand, within MPMX19_05431 at 123.631 kb on + strand, within MPMX19_05431 at 123.631 kb on + strand, within MPMX19_05431 at 123.631 kb on + strand, within MPMX19_05431 at 123.631 kb on + strand, within MPMX19_05431 at 123.631 kb on + strand, within MPMX19_05431 at 123.631 kb on + strand, within MPMX19_05431 at 123.632 kb on - strand, within MPMX19_05431 at 123.632 kb on - strand, within MPMX19_05431 at 123.632 kb on - strand, within MPMX19_05431 at 123.632 kb on - strand, within MPMX19_05431 at 123.632 kb on - strand, within MPMX19_05431 at 123.632 kb on - strand, within MPMX19_05431 at 123.632 kb on - strand, within MPMX19_05431 at 123.632 kb on - strand, within MPMX19_05431 at 123.632 kb on - strand, within MPMX19_05431 at 123.634 kb on + strand, within MPMX19_05431 at 123.634 kb on + strand, within MPMX19_05431 at 123.634 kb on + strand, within MPMX19_05431 at 123.634 kb on + strand, within MPMX19_05431 at 123.634 kb on + strand, within MPMX19_05431 at 123.634 kb on + strand, within MPMX19_05431 at 123.634 kb on + strand, within MPMX19_05431 at 123.634 kb on + strand, within MPMX19_05431 at 123.634 kb on + strand, within MPMX19_05431 at 123.634 kb on + strand, within MPMX19_05431 at 123.635 kb on - strand, within MPMX19_05431 at 123.635 kb on - strand, within MPMX19_05431 at 123.635 kb on - strand, within MPMX19_05431 at 123.635 kb on - strand, within MPMX19_05431 at 123.635 kb on - strand, within MPMX19_05431 at 123.635 kb on - strand, within MPMX19_05431 at 123.635 kb on - strand, within MPMX19_05431 at 123.655 kb on + strand, within MPMX19_05431 at 123.655 kb on + strand, within MPMX19_05431 at 123.655 kb on + strand, within MPMX19_05431 at 123.655 kb on + strand, within MPMX19_05431 at 123.656 kb on - strand, within MPMX19_05431 at 123.656 kb on - strand, within MPMX19_05431 at 123.656 kb on - strand, within MPMX19_05431 at 123.656 kb on - strand, within MPMX19_05431 at 123.656 kb on - strand, within MPMX19_05431 at 123.656 kb on - strand, within MPMX19_05431 at 123.656 kb on - strand, within MPMX19_05431 at 123.656 kb on - strand, within MPMX19_05431 at 123.656 kb on - strand, within MPMX19_05431 at 123.656 kb on - strand, within MPMX19_05431 at 123.656 kb on - strand, within MPMX19_05431 at 123.656 kb on - strand, within MPMX19_05431 at 123.829 kb on + strand, within MPMX19_05431 at 123.829 kb on + strand, within MPMX19_05431 at 123.830 kb on - strand, within MPMX19_05431 at 123.830 kb on - strand, within MPMX19_05431 at 123.830 kb on - strand, within MPMX19_05431
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 121,210 + MPMX19_05429 0.48 -0.4 121,210 + MPMX19_05429 0.48 +0.2 121,210 + MPMX19_05429 0.48 -1.3 121,210 + MPMX19_05429 0.48 -1.2 121,210 + MPMX19_05429 0.48 -1.7 121,210 + MPMX19_05429 0.48 -0.7 121,211 - MPMX19_05429 0.48 -0.6 121,211 - MPMX19_05429 0.48 -0.4 121,211 - MPMX19_05429 0.48 -2.2 121,211 - MPMX19_05429 0.48 +0.7 121,211 - MPMX19_05429 0.48 -1.9 121,211 - MPMX19_05429 0.48 +0.4 121,211 - MPMX19_05429 0.48 +0.4 121,642 + MPMX19_05429 0.78 -1.2 121,643 - MPMX19_05429 0.78 -2.3 121,643 - MPMX19_05429 0.78 +0.1 121,643 - MPMX19_05429 0.78 -0.5 121,643 - MPMX19_05429 0.78 -1.0 121,643 - MPMX19_05429 0.78 -0.2 122,051 + -1.7 122,051 + -1.1 122,051 + -0.7 122,052 - +1.0 122,052 - +0.4 122,104 + -0.4 122,104 + -0.9 122,419 + MPMX19_05430 0.44 +0.2 122,419 + MPMX19_05430 0.44 +0.8 122,419 + MPMX19_05430 0.44 +1.8 122,419 + MPMX19_05430 0.44 -0.5 122,420 - MPMX19_05430 0.44 -1.9 122,985 + -1.4 122,985 + -2.4 122,985 + +1.1 122,985 + -0.7 122,986 - -1.6 122,986 - -2.2 123,008 + -2.5 123,008 + -1.3 123,008 + -0.2 123,008 + -0.7 123,008 + -2.8 123,008 + -2.0 123,008 + -0.9 123,008 + -0.4 123,008 + -1.4 123,008 + -1.2 123,008 + -1.2 123,008 + -1.2 123,009 - +0.4 123,009 - -1.1 123,009 - -1.9 123,009 - +0.1 123,009 - +0.3 123,009 - -0.9 123,009 - -1.2 123,009 - +1.2 123,009 - -1.4 123,009 - -1.3 123,009 - -2.0 123,010 + -1.2 123,010 + +0.7 123,010 + +0.2 123,010 + +0.3 123,010 + +1.1 123,010 + -0.7 123,011 - -0.9 123,011 - -1.7 123,011 - +0.4 123,011 - -3.2 123,011 - +0.0 123,011 - -0.6 123,011 - -1.2 123,011 - -1.2 123,011 - -1.2 123,011 - -1.4 123,259 + MPMX19_05431 0.18 +0.5 123,260 - MPMX19_05431 0.18 -2.2 123,260 - MPMX19_05431 0.18 -0.7 123,260 - MPMX19_05431 0.18 -0.2 123,260 - MPMX19_05431 0.18 -0.0 123,436 + MPMX19_05431 0.35 -0.2 123,436 + MPMX19_05431 0.35 -0.4 123,436 + MPMX19_05431 0.35 +0.0 123,436 + MPMX19_05431 0.35 -0.5 123,436 + MPMX19_05431 0.35 +0.5 123,436 + MPMX19_05431 0.35 -3.0 123,436 + MPMX19_05431 0.35 -1.4 123,436 + MPMX19_05431 0.35 +0.2 123,436 + MPMX19_05431 0.35 -0.5 123,436 + MPMX19_05431 0.35 +0.1 123,436 + MPMX19_05431 0.35 +0.8 123,436 + MPMX19_05431 0.35 +1.0 123,437 - MPMX19_05431 0.35 +0.3 123,437 - MPMX19_05431 0.35 -0.4 123,437 - MPMX19_05431 0.35 +0.0 123,437 - MPMX19_05431 0.35 +1.0 123,437 - MPMX19_05431 0.35 -1.8 123,437 - MPMX19_05431 0.35 +0.6 123,437 - MPMX19_05431 0.35 +0.0 123,437 - MPMX19_05431 0.35 +0.3 123,437 - MPMX19_05431 0.35 -0.9 123,437 - MPMX19_05431 0.35 -1.4 123,437 - MPMX19_05431 0.35 -1.2 123,438 + MPMX19_05431 0.35 -0.7 123,438 + MPMX19_05431 0.35 -0.4 123,438 + MPMX19_05431 0.35 +1.4 123,438 + MPMX19_05431 0.35 -2.7 123,438 + MPMX19_05431 0.35 -0.9 123,438 + MPMX19_05431 0.35 +0.1 123,439 - MPMX19_05431 0.35 -2.2 123,439 - MPMX19_05431 0.35 -0.3 123,535 + MPMX19_05431 0.44 +0.6 123,535 + MPMX19_05431 0.44 -1.2 123,535 + MPMX19_05431 0.44 -0.6 123,535 + MPMX19_05431 0.44 -0.8 123,535 + MPMX19_05431 0.44 +0.7 123,535 + MPMX19_05431 0.44 +0.4 123,535 + MPMX19_05431 0.44 -0.6 123,535 + MPMX19_05431 0.44 -0.3 123,535 + MPMX19_05431 0.44 -0.9 123,535 + MPMX19_05431 0.44 -1.2 123,536 - MPMX19_05431 0.44 +0.6 123,536 - MPMX19_05431 0.44 +1.3 123,536 - MPMX19_05431 0.44 -1.7 123,536 - MPMX19_05431 0.44 -0.5 123,536 - MPMX19_05431 0.44 -2.2 123,536 - MPMX19_05431 0.44 -0.6 123,631 + MPMX19_05431 0.54 -2.4 123,631 + MPMX19_05431 0.54 -0.2 123,631 + MPMX19_05431 0.54 -0.7 123,631 + MPMX19_05431 0.54 -0.7 123,631 + MPMX19_05431 0.54 -2.3 123,631 + MPMX19_05431 0.54 +1.1 123,631 + MPMX19_05431 0.54 +0.1 123,631 + MPMX19_05431 0.54 +0.9 123,631 + MPMX19_05431 0.54 +1.1 123,631 + MPMX19_05431 0.54 -0.9 123,631 + MPMX19_05431 0.54 -0.5 123,631 + MPMX19_05431 0.54 +0.0 123,632 - MPMX19_05431 0.54 -0.2 123,632 - MPMX19_05431 0.54 -0.9 123,632 - MPMX19_05431 0.54 -2.0 123,632 - MPMX19_05431 0.54 +0.1 123,632 - MPMX19_05431 0.54 -0.6 123,632 - MPMX19_05431 0.54 -0.4 123,632 - MPMX19_05431 0.54 -0.7 123,632 - MPMX19_05431 0.54 -1.2 123,632 - MPMX19_05431 0.54 -2.6 123,634 + MPMX19_05431 0.54 +0.2 123,634 + MPMX19_05431 0.54 -1.8 123,634 + MPMX19_05431 0.54 -0.1 123,634 + MPMX19_05431 0.54 +0.4 123,634 + MPMX19_05431 0.54 -0.6 123,634 + MPMX19_05431 0.54 -0.1 123,634 + MPMX19_05431 0.54 -1.4 123,634 + MPMX19_05431 0.54 -2.0 123,634 + MPMX19_05431 0.54 +0.2 123,634 + MPMX19_05431 0.54 -0.3 123,635 - MPMX19_05431 0.54 +0.6 123,635 - MPMX19_05431 0.54 -1.5 123,635 - MPMX19_05431 0.54 +1.3 123,635 - MPMX19_05431 0.54 +0.1 123,635 - MPMX19_05431 0.54 -1.2 123,635 - MPMX19_05431 0.54 -0.4 123,635 - MPMX19_05431 0.54 +0.6 123,655 + MPMX19_05431 0.56 -2.2 123,655 + MPMX19_05431 0.56 -1.4 123,655 + MPMX19_05431 0.56 -1.4 123,655 + MPMX19_05431 0.56 -1.7 123,656 - MPMX19_05431 0.56 +1.2 123,656 - MPMX19_05431 0.56 -0.9 123,656 - MPMX19_05431 0.56 -1.3 123,656 - MPMX19_05431 0.56 -0.9 123,656 - MPMX19_05431 0.56 -0.3 123,656 - MPMX19_05431 0.56 -0.6 123,656 - MPMX19_05431 0.56 -0.7 123,656 - MPMX19_05431 0.56 -0.2 123,656 - MPMX19_05431 0.56 +0.8 123,656 - MPMX19_05431 0.56 +0.1 123,656 - MPMX19_05431 0.56 +0.4 123,656 - MPMX19_05431 0.56 -0.8 123,829 + MPMX19_05431 0.73 -1.2 123,829 + MPMX19_05431 0.73 -0.2 123,830 - MPMX19_05431 0.73 -0.3 123,830 - MPMX19_05431 0.73 -1.6 123,830 - MPMX19_05431 0.73 +0.0
Or see this region's nucleotide sequence