Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05313

Experiment: NL-CCM; spin-x control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05312 and MPMX19_05313 are separated by 294 nucleotidesMPMX19_05313 and MPMX19_05314 are separated by 64 nucleotidesMPMX19_05314 and MPMX19_05315 are separated by 113 nucleotides MPMX19_05312: MPMX19_05312 - 4,4'-diapophytoene desaturase (4,4'-diapolycopene-forming), at 849,266 to 850,765 _05312 MPMX19_05313: MPMX19_05313 - 4,4'-diapolycopene aldehyde oxidase, at 851,060 to 852,355 _05313 MPMX19_05314: MPMX19_05314 - hypothetical protein, at 852,420 to 852,881 _05314 MPMX19_05315: MPMX19_05315 - Long-chain-fatty-acid--CoA ligase, at 852,995 to 854,572 _05315 Position (kb) 851 852 853Strain fitness (log2 ratio) -2 -1 0 1 2at 850.076 kb on - strand, within MPMX19_05312at 850.076 kb on - strand, within MPMX19_05312at 850.248 kb on + strand, within MPMX19_05312at 850.249 kb on - strand, within MPMX19_05312at 850.249 kb on - strand, within MPMX19_05312at 850.249 kb on - strand, within MPMX19_05312at 850.296 kb on + strand, within MPMX19_05312at 850.296 kb on + strand, within MPMX19_05312at 850.296 kb on + strand, within MPMX19_05312at 850.297 kb on - strand, within MPMX19_05312at 850.297 kb on - strand, within MPMX19_05312at 850.297 kb on - strand, within MPMX19_05312at 850.557 kb on + strand, within MPMX19_05312at 850.641 kb on + strandat 850.641 kb on + strandat 850.642 kb on - strandat 850.642 kb on - strandat 850.865 kb on + strandat 850.865 kb on + strandat 850.866 kb on - strandat 850.866 kb on - strandat 850.917 kb on + strandat 850.917 kb on + strandat 850.917 kb on + strandat 850.917 kb on + strandat 850.918 kb on - strandat 850.918 kb on - strandat 850.918 kb on - strandat 850.918 kb on - strandat 850.918 kb on - strandat 850.918 kb on - strandat 850.918 kb on - strandat 850.930 kb on - strandat 850.930 kb on - strandat 850.963 kb on + strandat 850.964 kb on - strandat 850.985 kb on - strandat 850.985 kb on - strandat 850.993 kb on - strandat 851.273 kb on + strand, within MPMX19_05313at 851.273 kb on + strand, within MPMX19_05313at 851.273 kb on + strand, within MPMX19_05313at 851.274 kb on - strand, within MPMX19_05313at 852.507 kb on + strand, within MPMX19_05314at 852.507 kb on + strand, within MPMX19_05314at 852.508 kb on - strand, within MPMX19_05314at 852.508 kb on - strand, within MPMX19_05314at 852.508 kb on - strand, within MPMX19_05314at 852.771 kb on + strand, within MPMX19_05314at 852.771 kb on + strand, within MPMX19_05314at 852.896 kb on + strandat 852.897 kb on - strandat 852.974 kb on + strandat 852.974 kb on + strandat 852.974 kb on + strandat 852.975 kb on - strandat 852.975 kb on - strandat 852.975 kb on - strandat 852.975 kb on - strandat 852.975 kb on - strandat 852.975 kb on - strandat 852.975 kb on - strandat 852.976 kb on + strandat 852.976 kb on + strandat 852.976 kb on + strandat 852.976 kb on + strandat 852.976 kb on + strandat 852.976 kb on + strandat 852.976 kb on + strandat 852.976 kb on + strandat 852.976 kb on + strandat 852.976 kb on + strandat 852.977 kb on - strandat 852.977 kb on - strandat 852.977 kb on - strandat 852.977 kb on - strandat 852.977 kb on - strandat 852.977 kb on - strandat 852.977 kb on - strandat 852.977 kb on - strandat 852.977 kb on - strandat 852.977 kb on - strandat 853.014 kb on + strandat 853.014 kb on + strandat 853.014 kb on + strandat 853.015 kb on - strandat 853.015 kb on - strandat 853.015 kb on - strandat 853.251 kb on + strand, within MPMX19_05315at 853.251 kb on + strand, within MPMX19_05315at 853.251 kb on + strand, within MPMX19_05315at 853.251 kb on + strand, within MPMX19_05315at 853.251 kb on + strand, within MPMX19_05315at 853.251 kb on + strand, within MPMX19_05315at 853.251 kb on + strand, within MPMX19_05315at 853.251 kb on + strand, within MPMX19_05315at 853.251 kb on + strand, within MPMX19_05315at 853.251 kb on + strand, within MPMX19_05315at 853.251 kb on + strand, within MPMX19_05315at 853.251 kb on + strand, within MPMX19_05315at 853.252 kb on - strand, within MPMX19_05315at 853.252 kb on - strand, within MPMX19_05315at 853.252 kb on - strand, within MPMX19_05315at 853.252 kb on - strand, within MPMX19_05315at 853.252 kb on - strand, within MPMX19_05315at 853.252 kb on - strand, within MPMX19_05315at 853.252 kb on - strand, within MPMX19_05315at 853.252 kb on - strand, within MPMX19_05315at 853.252 kb on - strand, within MPMX19_05315at 853.252 kb on - strand, within MPMX19_05315at 853.252 kb on - strand, within MPMX19_05315at 853.252 kb on - strand, within MPMX19_05315at 853.335 kb on + strand, within MPMX19_05315at 853.335 kb on + strand, within MPMX19_05315at 853.335 kb on + strand, within MPMX19_05315at 853.336 kb on - strand, within MPMX19_05315at 853.336 kb on - strand, within MPMX19_05315at 853.353 kb on + strand, within MPMX19_05315at 853.354 kb on - strand, within MPMX19_05315at 853.354 kb on - strand, within MPMX19_05315

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
remove
850,076 - MPMX19_05312 0.54 +0.8
850,076 - MPMX19_05312 0.54 -1.0
850,248 + MPMX19_05312 0.65 +0.1
850,249 - MPMX19_05312 0.66 -1.1
850,249 - MPMX19_05312 0.66 -2.0
850,249 - MPMX19_05312 0.66 +0.4
850,296 + MPMX19_05312 0.69 -0.9
850,296 + MPMX19_05312 0.69 +2.6
850,296 + MPMX19_05312 0.69 +0.1
850,297 - MPMX19_05312 0.69 +0.9
850,297 - MPMX19_05312 0.69 +0.1
850,297 - MPMX19_05312 0.69 -2.2
850,557 + MPMX19_05312 0.86 -1.1
850,641 + -1.0
850,641 + -1.9
850,642 - -0.6
850,642 - +0.3
850,865 + +0.7
850,865 + -2.2
850,866 - +1.1
850,866 - -0.9
850,917 + -0.6
850,917 + -1.3
850,917 + -0.6
850,917 + +0.1
850,918 - -0.8
850,918 - -0.2
850,918 - -0.7
850,918 - +0.3
850,918 - -1.7
850,918 - -0.5
850,918 - -0.3
850,930 - -1.9
850,930 - -0.5
850,963 + +0.3
850,964 - -1.0
850,985 - -0.0
850,985 - +2.4
850,993 - -0.7
851,273 + MPMX19_05313 0.16 -0.7
851,273 + MPMX19_05313 0.16 -0.6
851,273 + MPMX19_05313 0.16 -0.8
851,274 - MPMX19_05313 0.17 -0.5
852,507 + MPMX19_05314 0.19 -0.9
852,507 + MPMX19_05314 0.19 +0.2
852,508 - MPMX19_05314 0.19 -1.7
852,508 - MPMX19_05314 0.19 -0.4
852,508 - MPMX19_05314 0.19 -0.6
852,771 + MPMX19_05314 0.76 +0.3
852,771 + MPMX19_05314 0.76 -1.2
852,896 + +0.8
852,897 - -0.4
852,974 + -0.8
852,974 + +0.6
852,974 + -0.1
852,975 - -2.3
852,975 - +0.1
852,975 - -0.5
852,975 - -2.3
852,975 - -1.2
852,975 - +1.3
852,975 - -0.4
852,976 + -0.9
852,976 + +0.1
852,976 + -1.9
852,976 + +0.9
852,976 + -1.8
852,976 + -0.0
852,976 + -0.1
852,976 + +1.5
852,976 + -0.6
852,976 + +0.5
852,977 - -0.8
852,977 - +0.3
852,977 - +0.2
852,977 - +0.2
852,977 - +2.0
852,977 - +0.4
852,977 - +0.9
852,977 - -0.2
852,977 - -2.0
852,977 - -1.0
853,014 + +0.6
853,014 + -1.0
853,014 + -2.5
853,015 - -1.0
853,015 - -0.5
853,015 - -0.6
853,251 + MPMX19_05315 0.16 +1.3
853,251 + MPMX19_05315 0.16 +0.3
853,251 + MPMX19_05315 0.16 -0.3
853,251 + MPMX19_05315 0.16 -0.5
853,251 + MPMX19_05315 0.16 +0.7
853,251 + MPMX19_05315 0.16 -0.1
853,251 + MPMX19_05315 0.16 -0.6
853,251 + MPMX19_05315 0.16 +0.9
853,251 + MPMX19_05315 0.16 -0.1
853,251 + MPMX19_05315 0.16 -1.0
853,251 + MPMX19_05315 0.16 +0.5
853,251 + MPMX19_05315 0.16 -1.1
853,252 - MPMX19_05315 0.16 +0.2
853,252 - MPMX19_05315 0.16 -1.9
853,252 - MPMX19_05315 0.16 +2.1
853,252 - MPMX19_05315 0.16 -1.8
853,252 - MPMX19_05315 0.16 +0.1
853,252 - MPMX19_05315 0.16 +0.3
853,252 - MPMX19_05315 0.16 +0.1
853,252 - MPMX19_05315 0.16 -0.0
853,252 - MPMX19_05315 0.16 -0.4
853,252 - MPMX19_05315 0.16 +1.1
853,252 - MPMX19_05315 0.16 -1.1
853,252 - MPMX19_05315 0.16 -2.4
853,335 + MPMX19_05315 0.22 -0.0
853,335 + MPMX19_05315 0.22 -2.2
853,335 + MPMX19_05315 0.22 -0.3
853,336 - MPMX19_05315 0.22 +0.7
853,336 - MPMX19_05315 0.22 -0.4
853,353 + MPMX19_05315 0.23 +1.0
853,354 - MPMX19_05315 0.23 +0.2
853,354 - MPMX19_05315 0.23 -1.6

Or see this region's nucleotide sequence