Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05228 and MPMX19_05229 overlap by 4 nucleotides MPMX19_05229 and MPMX19_05230 are separated by 103 nucleotides MPMX19_05230 and MPMX19_05231 are separated by 272 nucleotides
MPMX19_05228: MPMX19_05228 - Anti-sigma-E factor ChrR, at 754,353 to 755,039
_05228
MPMX19_05229: MPMX19_05229 - ECF RNA polymerase sigma factor RpoE, at 755,036 to 755,659
_05229
MPMX19_05230: MPMX19_05230 - putative MFS-type transporter YcaD, at 755,763 to 757,001
_05230
MPMX19_05231: MPMX19_05231 - 1,2-epoxyphenylacetyl-CoA isomerase, at 757,274 to 758,089
_05231
Position (kb) 755
756
757
758 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 754.903 kb on + strand, within MPMX19_05228 at 754.903 kb on + strand, within MPMX19_05228 at 754.903 kb on + strand, within MPMX19_05228 at 754.903 kb on + strand, within MPMX19_05228 at 754.903 kb on + strand, within MPMX19_05228 at 754.903 kb on + strand, within MPMX19_05228 at 754.904 kb on - strand, within MPMX19_05228 at 754.904 kb on - strand, within MPMX19_05228 at 754.904 kb on - strand, within MPMX19_05228 at 754.904 kb on - strand, within MPMX19_05228 at 754.904 kb on - strand, within MPMX19_05228 at 754.936 kb on + strand, within MPMX19_05228 at 754.936 kb on + strand, within MPMX19_05228 at 754.936 kb on + strand, within MPMX19_05228 at 754.937 kb on - strand, within MPMX19_05228 at 755.095 kb on + strand at 755.157 kb on + strand, within MPMX19_05229 at 755.158 kb on - strand, within MPMX19_05229 at 755.158 kb on - strand, within MPMX19_05229 at 755.158 kb on - strand, within MPMX19_05229 at 755.478 kb on + strand, within MPMX19_05229 at 755.478 kb on + strand, within MPMX19_05229 at 755.478 kb on + strand, within MPMX19_05229 at 755.478 kb on + strand, within MPMX19_05229 at 755.478 kb on + strand, within MPMX19_05229 at 755.479 kb on - strand, within MPMX19_05229 at 755.479 kb on - strand, within MPMX19_05229 at 755.479 kb on - strand, within MPMX19_05229 at 755.479 kb on - strand, within MPMX19_05229 at 755.479 kb on - strand, within MPMX19_05229 at 755.479 kb on - strand, within MPMX19_05229 at 755.479 kb on - strand, within MPMX19_05229 at 755.479 kb on - strand, within MPMX19_05229 at 755.479 kb on - strand, within MPMX19_05229 at 755.479 kb on - strand, within MPMX19_05229 at 755.479 kb on - strand, within MPMX19_05229 at 755.696 kb on - strand at 755.710 kb on - strand at 755.738 kb on + strand at 755.738 kb on + strand at 755.738 kb on + strand at 755.738 kb on + strand at 755.738 kb on + strand at 755.738 kb on + strand at 755.738 kb on + strand at 755.739 kb on - strand at 755.739 kb on - strand at 755.739 kb on - strand at 755.739 kb on - strand at 755.739 kb on - strand at 755.764 kb on + strand at 755.765 kb on - strand at 755.765 kb on - strand at 755.890 kb on + strand, within MPMX19_05230 at 755.890 kb on + strand, within MPMX19_05230 at 755.890 kb on + strand, within MPMX19_05230 at 755.890 kb on + strand, within MPMX19_05230 at 755.890 kb on + strand, within MPMX19_05230 at 755.891 kb on - strand, within MPMX19_05230 at 755.891 kb on - strand, within MPMX19_05230 at 755.891 kb on - strand, within MPMX19_05230 at 755.891 kb on - strand, within MPMX19_05230 at 755.891 kb on - strand, within MPMX19_05230 at 756.052 kb on + strand, within MPMX19_05230 at 756.052 kb on + strand, within MPMX19_05230 at 756.052 kb on + strand, within MPMX19_05230 at 756.052 kb on + strand, within MPMX19_05230 at 756.052 kb on + strand, within MPMX19_05230 at 756.053 kb on - strand, within MPMX19_05230 at 756.053 kb on - strand, within MPMX19_05230 at 756.053 kb on - strand, within MPMX19_05230 at 756.053 kb on - strand, within MPMX19_05230 at 756.053 kb on - strand, within MPMX19_05230 at 756.349 kb on + strand, within MPMX19_05230 at 756.349 kb on + strand, within MPMX19_05230 at 756.349 kb on + strand, within MPMX19_05230 at 756.350 kb on - strand, within MPMX19_05230 at 756.350 kb on - strand, within MPMX19_05230 at 756.350 kb on - strand, within MPMX19_05230 at 756.583 kb on + strand, within MPMX19_05230 at 756.583 kb on + strand, within MPMX19_05230 at 756.584 kb on - strand, within MPMX19_05230 at 756.584 kb on - strand, within MPMX19_05230 at 756.584 kb on - strand, within MPMX19_05230 at 756.598 kb on + strand, within MPMX19_05230 at 756.598 kb on + strand, within MPMX19_05230 at 756.598 kb on + strand, within MPMX19_05230 at 756.598 kb on + strand, within MPMX19_05230 at 756.598 kb on + strand, within MPMX19_05230 at 756.598 kb on + strand, within MPMX19_05230 at 756.598 kb on + strand, within MPMX19_05230 at 756.598 kb on + strand, within MPMX19_05230 at 756.599 kb on - strand, within MPMX19_05230 at 756.599 kb on - strand, within MPMX19_05230 at 756.599 kb on - strand, within MPMX19_05230 at 756.599 kb on - strand, within MPMX19_05230 at 756.599 kb on - strand, within MPMX19_05230 at 756.599 kb on - strand, within MPMX19_05230 at 756.599 kb on - strand, within MPMX19_05230 at 756.599 kb on - strand, within MPMX19_05230 at 756.599 kb on - strand, within MPMX19_05230 at 756.599 kb on - strand, within MPMX19_05230 at 756.667 kb on + strand, within MPMX19_05230 at 756.667 kb on + strand, within MPMX19_05230 at 756.667 kb on + strand, within MPMX19_05230 at 756.667 kb on + strand, within MPMX19_05230 at 756.667 kb on + strand, within MPMX19_05230 at 756.667 kb on + strand, within MPMX19_05230 at 756.667 kb on + strand, within MPMX19_05230 at 756.667 kb on + strand, within MPMX19_05230 at 756.667 kb on + strand, within MPMX19_05230 at 756.667 kb on - strand, within MPMX19_05230 at 756.668 kb on - strand, within MPMX19_05230 at 756.668 kb on - strand, within MPMX19_05230 at 756.668 kb on - strand, within MPMX19_05230 at 756.668 kb on - strand, within MPMX19_05230 at 756.668 kb on - strand, within MPMX19_05230 at 756.668 kb on - strand, within MPMX19_05230 at 756.668 kb on - strand, within MPMX19_05230 at 756.668 kb on - strand, within MPMX19_05230 at 756.668 kb on - strand, within MPMX19_05230 at 756.791 kb on + strand, within MPMX19_05230 at 756.792 kb on - strand, within MPMX19_05230 at 756.823 kb on + strand, within MPMX19_05230 at 756.823 kb on + strand, within MPMX19_05230 at 756.823 kb on + strand, within MPMX19_05230 at 756.823 kb on + strand, within MPMX19_05230 at 756.823 kb on + strand, within MPMX19_05230 at 756.824 kb on - strand, within MPMX19_05230 at 756.850 kb on + strand, within MPMX19_05230 at 756.850 kb on + strand, within MPMX19_05230 at 756.851 kb on - strand, within MPMX19_05230 at 756.851 kb on - strand, within MPMX19_05230 at 756.851 kb on - strand, within MPMX19_05230 at 756.851 kb on - strand, within MPMX19_05230 at 756.851 kb on - strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.854 kb on - strand, within MPMX19_05230 at 756.854 kb on - strand, within MPMX19_05230 at 756.854 kb on - strand, within MPMX19_05230 at 756.854 kb on - strand, within MPMX19_05230 at 756.854 kb on - strand, within MPMX19_05230 at 756.854 kb on - strand, within MPMX19_05230 at 756.854 kb on - strand, within MPMX19_05230 at 756.854 kb on - strand, within MPMX19_05230 at 757.184 kb on - strand at 757.238 kb on + strand at 757.238 kb on + strand at 757.238 kb on + strand at 757.238 kb on + strand at 757.238 kb on + strand at 757.238 kb on + strand at 757.238 kb on + strand at 757.238 kb on + strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.253 kb on - strand at 757.582 kb on - strand, within MPMX19_05231 at 757.706 kb on + strand, within MPMX19_05231 at 757.706 kb on + strand, within MPMX19_05231 at 757.706 kb on + strand, within MPMX19_05231 at 757.706 kb on + strand, within MPMX19_05231 at 757.706 kb on + strand, within MPMX19_05231 at 757.706 kb on + strand, within MPMX19_05231 at 757.706 kb on + strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.925 kb on + strand, within MPMX19_05231 at 757.926 kb on - strand, within MPMX19_05231
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 754,903 + MPMX19_05228 0.80 -0.3 754,903 + MPMX19_05228 0.80 +1.4 754,903 + MPMX19_05228 0.80 -0.7 754,903 + MPMX19_05228 0.80 -0.3 754,903 + MPMX19_05228 0.80 -1.0 754,903 + MPMX19_05228 0.80 +0.1 754,904 - MPMX19_05228 0.80 +1.5 754,904 - MPMX19_05228 0.80 +0.3 754,904 - MPMX19_05228 0.80 +0.5 754,904 - MPMX19_05228 0.80 -0.1 754,904 - MPMX19_05228 0.80 -0.7 754,936 + MPMX19_05228 0.85 +0.5 754,936 + MPMX19_05228 0.85 +0.2 754,936 + MPMX19_05228 0.85 +1.5 754,937 - MPMX19_05228 0.85 +0.1 755,095 + -1.4 755,157 + MPMX19_05229 0.19 -1.7 755,158 - MPMX19_05229 0.20 -1.0 755,158 - MPMX19_05229 0.20 +0.7 755,158 - MPMX19_05229 0.20 -2.6 755,478 + MPMX19_05229 0.71 -0.2 755,478 + MPMX19_05229 0.71 -2.4 755,478 + MPMX19_05229 0.71 -1.7 755,478 + MPMX19_05229 0.71 +1.4 755,478 + MPMX19_05229 0.71 -2.2 755,479 - MPMX19_05229 0.71 -2.6 755,479 - MPMX19_05229 0.71 -1.1 755,479 - MPMX19_05229 0.71 -0.7 755,479 - MPMX19_05229 0.71 +0.5 755,479 - MPMX19_05229 0.71 +0.4 755,479 - MPMX19_05229 0.71 +1.5 755,479 - MPMX19_05229 0.71 -0.2 755,479 - MPMX19_05229 0.71 -0.6 755,479 - MPMX19_05229 0.71 -1.4 755,479 - MPMX19_05229 0.71 -0.3 755,479 - MPMX19_05229 0.71 -0.8 755,696 - +1.1 755,710 - -1.0 755,738 + -0.6 755,738 + -0.8 755,738 + +0.4 755,738 + +0.5 755,738 + -1.3 755,738 + -0.0 755,738 + -0.4 755,739 - -0.9 755,739 - +0.2 755,739 - -2.3 755,739 - -1.0 755,739 - +1.3 755,764 + +0.1 755,765 - -2.4 755,765 - -0.1 755,890 + MPMX19_05230 0.10 +0.3 755,890 + MPMX19_05230 0.10 +0.5 755,890 + MPMX19_05230 0.10 -0.6 755,890 + MPMX19_05230 0.10 -1.3 755,890 + MPMX19_05230 0.10 -0.9 755,891 - MPMX19_05230 0.10 +0.3 755,891 - MPMX19_05230 0.10 -0.7 755,891 - MPMX19_05230 0.10 -1.2 755,891 - MPMX19_05230 0.10 +0.4 755,891 - MPMX19_05230 0.10 -1.5 756,052 + MPMX19_05230 0.23 -0.3 756,052 + MPMX19_05230 0.23 -1.7 756,052 + MPMX19_05230 0.23 -0.1 756,052 + MPMX19_05230 0.23 +1.1 756,052 + MPMX19_05230 0.23 -0.5 756,053 - MPMX19_05230 0.23 -0.5 756,053 - MPMX19_05230 0.23 +0.9 756,053 - MPMX19_05230 0.23 +0.4 756,053 - MPMX19_05230 0.23 -1.0 756,053 - MPMX19_05230 0.23 -1.7 756,349 + MPMX19_05230 0.47 -0.4 756,349 + MPMX19_05230 0.47 -0.2 756,349 + MPMX19_05230 0.47 -0.2 756,350 - MPMX19_05230 0.47 +1.0 756,350 - MPMX19_05230 0.47 +0.1 756,350 - MPMX19_05230 0.47 -0.3 756,583 + MPMX19_05230 0.66 -0.1 756,583 + MPMX19_05230 0.66 +0.4 756,584 - MPMX19_05230 0.66 -1.6 756,584 - MPMX19_05230 0.66 +0.7 756,584 - MPMX19_05230 0.66 +1.9 756,598 + MPMX19_05230 0.67 -1.9 756,598 + MPMX19_05230 0.67 +1.3 756,598 + MPMX19_05230 0.67 -1.7 756,598 + MPMX19_05230 0.67 -0.7 756,598 + MPMX19_05230 0.67 -0.1 756,598 + MPMX19_05230 0.67 +0.5 756,598 + MPMX19_05230 0.67 -1.0 756,598 + MPMX19_05230 0.67 -0.3 756,599 - MPMX19_05230 0.67 -0.2 756,599 - MPMX19_05230 0.67 -0.4 756,599 - MPMX19_05230 0.67 -0.7 756,599 - MPMX19_05230 0.67 -0.7 756,599 - MPMX19_05230 0.67 -2.3 756,599 - MPMX19_05230 0.67 -0.6 756,599 - MPMX19_05230 0.67 -2.5 756,599 - MPMX19_05230 0.67 +0.0 756,599 - MPMX19_05230 0.67 +0.5 756,599 - MPMX19_05230 0.67 +1.7 756,667 + MPMX19_05230 0.73 -1.7 756,667 + MPMX19_05230 0.73 +0.8 756,667 + MPMX19_05230 0.73 -1.2 756,667 + MPMX19_05230 0.73 -0.2 756,667 + MPMX19_05230 0.73 +1.4 756,667 + MPMX19_05230 0.73 +0.6 756,667 + MPMX19_05230 0.73 -1.9 756,667 + MPMX19_05230 0.73 -0.8 756,667 + MPMX19_05230 0.73 -2.9 756,667 - MPMX19_05230 0.73 -0.9 756,668 - MPMX19_05230 0.73 -0.2 756,668 - MPMX19_05230 0.73 -1.3 756,668 - MPMX19_05230 0.73 -0.9 756,668 - MPMX19_05230 0.73 -1.0 756,668 - MPMX19_05230 0.73 +0.1 756,668 - MPMX19_05230 0.73 -1.7 756,668 - MPMX19_05230 0.73 -3.0 756,668 - MPMX19_05230 0.73 -0.1 756,668 - MPMX19_05230 0.73 -0.8 756,791 + MPMX19_05230 0.83 -2.7 756,792 - MPMX19_05230 0.83 -0.2 756,823 + MPMX19_05230 0.86 -0.0 756,823 + MPMX19_05230 0.86 +0.6 756,823 + MPMX19_05230 0.86 -0.8 756,823 + MPMX19_05230 0.86 -1.9 756,823 + MPMX19_05230 0.86 -1.5 756,824 - MPMX19_05230 0.86 -0.6 756,850 + MPMX19_05230 0.88 +0.6 756,850 + MPMX19_05230 0.88 -0.5 756,851 - MPMX19_05230 0.88 +0.2 756,851 - MPMX19_05230 0.88 -3.2 756,851 - MPMX19_05230 0.88 -0.1 756,851 - MPMX19_05230 0.88 +0.1 756,851 - MPMX19_05230 0.88 -0.5 756,853 + MPMX19_05230 0.88 +0.7 756,853 + MPMX19_05230 0.88 -2.0 756,853 + MPMX19_05230 0.88 +0.8 756,853 + MPMX19_05230 0.88 -0.8 756,853 + MPMX19_05230 0.88 -0.9 756,853 + MPMX19_05230 0.88 -0.5 756,853 + MPMX19_05230 0.88 -1.2 756,853 + MPMX19_05230 0.88 -0.0 756,853 + MPMX19_05230 0.88 -0.4 756,853 + MPMX19_05230 0.88 +0.3 756,853 + MPMX19_05230 0.88 -0.3 756,854 - MPMX19_05230 0.88 +0.1 756,854 - MPMX19_05230 0.88 +0.4 756,854 - MPMX19_05230 0.88 -1.5 756,854 - MPMX19_05230 0.88 -0.5 756,854 - MPMX19_05230 0.88 -0.3 756,854 - MPMX19_05230 0.88 -2.4 756,854 - MPMX19_05230 0.88 +0.0 756,854 - MPMX19_05230 0.88 +0.1 757,184 - -0.8 757,238 + -0.4 757,238 + +0.1 757,238 + +0.5 757,238 + +0.9 757,238 + -0.3 757,238 + -1.5 757,238 + -0.4 757,238 + -0.4 757,239 - -1.1 757,239 - +0.6 757,239 - -0.9 757,239 - -0.5 757,239 - +0.5 757,239 - +1.1 757,239 - -1.7 757,239 - -0.7 757,239 - +0.3 757,239 - +0.1 757,239 - +0.8 757,239 - -0.1 757,239 - -0.4 757,253 - -2.0 757,582 - MPMX19_05231 0.38 -0.3 757,706 + MPMX19_05231 0.53 +0.2 757,706 + MPMX19_05231 0.53 -0.2 757,706 + MPMX19_05231 0.53 +1.3 757,706 + MPMX19_05231 0.53 +0.3 757,706 + MPMX19_05231 0.53 -0.1 757,706 + MPMX19_05231 0.53 -0.9 757,706 + MPMX19_05231 0.53 -0.5 757,707 - MPMX19_05231 0.53 -2.4 757,707 - MPMX19_05231 0.53 -1.5 757,707 - MPMX19_05231 0.53 +0.5 757,707 - MPMX19_05231 0.53 -0.3 757,707 - MPMX19_05231 0.53 +0.3 757,707 - MPMX19_05231 0.53 +1.2 757,707 - MPMX19_05231 0.53 -1.4 757,707 - MPMX19_05231 0.53 +0.2 757,707 - MPMX19_05231 0.53 -0.4 757,707 - MPMX19_05231 0.53 +0.8 757,707 - MPMX19_05231 0.53 +1.1 757,707 - MPMX19_05231 0.53 -0.8 757,707 - MPMX19_05231 0.53 -1.5 757,707 - MPMX19_05231 0.53 +0.5 757,925 + MPMX19_05231 0.80 -1.3 757,926 - MPMX19_05231 0.80 -1.3
Or see this region's nucleotide sequence