Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04919

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04918 and MPMX19_04919 are separated by 178 nucleotidesMPMX19_04919 and MPMX19_04920 are separated by 34 nucleotides MPMX19_04918: MPMX19_04918 - Acetyl-CoA:oxalate CoA-transferase, at 374,026 to 375,228 _04918 MPMX19_04919: MPMX19_04919 - 5-aminovalerate aminotransferase DavT, at 375,407 to 376,696 _04919 MPMX19_04920: MPMX19_04920 - Succinate-semialdehyde dehydrogenase [NADP(+)] GabD, at 376,731 to 378,191 _04920 Position (kb) 375 376 377Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 374.486 kb on + strand, within MPMX19_04918at 374.486 kb on + strand, within MPMX19_04918at 374.486 kb on + strand, within MPMX19_04918at 374.486 kb on + strand, within MPMX19_04918at 374.486 kb on + strand, within MPMX19_04918at 374.486 kb on + strand, within MPMX19_04918at 374.486 kb on + strand, within MPMX19_04918at 374.486 kb on + strand, within MPMX19_04918at 374.486 kb on + strand, within MPMX19_04918at 374.486 kb on + strand, within MPMX19_04918at 374.487 kb on - strand, within MPMX19_04918at 374.487 kb on - strand, within MPMX19_04918at 374.487 kb on - strand, within MPMX19_04918at 374.487 kb on - strand, within MPMX19_04918at 374.487 kb on - strand, within MPMX19_04918at 374.487 kb on - strand, within MPMX19_04918at 374.514 kb on - strand, within MPMX19_04918at 374.514 kb on - strand, within MPMX19_04918at 374.514 kb on - strand, within MPMX19_04918at 374.526 kb on + strand, within MPMX19_04918at 374.526 kb on + strand, within MPMX19_04918at 374.526 kb on + strand, within MPMX19_04918at 374.526 kb on + strand, within MPMX19_04918at 374.526 kb on + strand, within MPMX19_04918at 374.526 kb on + strand, within MPMX19_04918at 374.526 kb on + strand, within MPMX19_04918at 374.526 kb on + strand, within MPMX19_04918at 374.527 kb on - strand, within MPMX19_04918at 374.527 kb on - strand, within MPMX19_04918at 374.527 kb on - strand, within MPMX19_04918at 374.527 kb on - strand, within MPMX19_04918at 374.527 kb on - strand, within MPMX19_04918at 374.527 kb on - strand, within MPMX19_04918at 374.693 kb on + strand, within MPMX19_04918at 374.693 kb on + strand, within MPMX19_04918at 374.693 kb on + strand, within MPMX19_04918at 374.694 kb on - strand, within MPMX19_04918at 374.694 kb on - strand, within MPMX19_04918at 374.694 kb on - strand, within MPMX19_04918at 374.814 kb on - strand, within MPMX19_04918at 374.867 kb on + strand, within MPMX19_04918at 374.868 kb on - strand, within MPMX19_04918at 374.868 kb on - strand, within MPMX19_04918at 374.868 kb on - strand, within MPMX19_04918at 374.903 kb on + strand, within MPMX19_04918at 374.903 kb on + strand, within MPMX19_04918at 374.904 kb on - strand, within MPMX19_04918at 374.904 kb on - strand, within MPMX19_04918at 374.904 kb on - strand, within MPMX19_04918at 374.904 kb on - strand, within MPMX19_04918at 374.904 kb on - strand, within MPMX19_04918at 374.915 kb on + strand, within MPMX19_04918at 374.915 kb on + strand, within MPMX19_04918at 374.915 kb on + strand, within MPMX19_04918at 374.915 kb on + strand, within MPMX19_04918at 374.916 kb on - strand, within MPMX19_04918at 374.916 kb on - strand, within MPMX19_04918at 374.916 kb on - strand, within MPMX19_04918at 374.916 kb on - strand, within MPMX19_04918at 374.916 kb on - strand, within MPMX19_04918at 374.916 kb on - strand, within MPMX19_04918at 374.916 kb on - strand, within MPMX19_04918at 375.053 kb on + strand, within MPMX19_04918at 375.053 kb on + strand, within MPMX19_04918at 375.053 kb on + strand, within MPMX19_04918at 375.054 kb on - strand, within MPMX19_04918at 375.054 kb on - strand, within MPMX19_04918at 375.054 kb on - strand, within MPMX19_04918at 375.054 kb on - strand, within MPMX19_04918at 375.054 kb on - strand, within MPMX19_04918at 375.054 kb on - strand, within MPMX19_04918at 375.054 kb on - strand, within MPMX19_04918at 375.405 kb on + strandat 375.405 kb on + strandat 375.405 kb on + strandat 375.405 kb on + strandat 375.405 kb on + strandat 375.405 kb on + strandat 375.405 kb on + strandat 375.405 kb on + strandat 375.405 kb on + strandat 375.405 kb on + strandat 375.408 kb on + strandat 375.409 kb on - strandat 375.409 kb on - strandat 375.409 kb on - strandat 375.513 kb on + strandat 375.513 kb on + strandat 375.513 kb on + strandat 375.513 kb on + strandat 375.513 kb on + strandat 375.513 kb on + strandat 375.513 kb on + strandat 375.513 kb on + strandat 375.513 kb on + strandat 375.513 kb on + strandat 375.513 kb on + strandat 375.514 kb on - strandat 375.514 kb on - strandat 375.514 kb on - strandat 375.514 kb on - strandat 375.514 kb on - strandat 375.514 kb on - strandat 375.514 kb on - strandat 375.514 kb on - strandat 375.514 kb on - strandat 375.514 kb on - strandat 375.804 kb on + strand, within MPMX19_04919at 375.804 kb on + strand, within MPMX19_04919at 375.804 kb on + strand, within MPMX19_04919at 375.804 kb on + strand, within MPMX19_04919at 375.804 kb on + strand, within MPMX19_04919at 375.804 kb on + strand, within MPMX19_04919at 375.804 kb on + strand, within MPMX19_04919at 375.804 kb on + strand, within MPMX19_04919at 375.804 kb on + strand, within MPMX19_04919at 375.804 kb on + strand, within MPMX19_04919at 375.805 kb on - strand, within MPMX19_04919at 375.805 kb on - strand, within MPMX19_04919at 375.805 kb on - strand, within MPMX19_04919at 375.805 kb on - strand, within MPMX19_04919at 375.805 kb on - strand, within MPMX19_04919at 375.805 kb on - strand, within MPMX19_04919at 375.805 kb on - strand, within MPMX19_04919at 375.805 kb on - strand, within MPMX19_04919at 375.805 kb on - strand, within MPMX19_04919at 375.805 kb on - strand, within MPMX19_04919at 375.805 kb on - strand, within MPMX19_04919at 375.805 kb on - strand, within MPMX19_04919at 375.805 kb on - strand, within MPMX19_04919at 376.233 kb on + strand, within MPMX19_04919at 376.233 kb on + strand, within MPMX19_04919at 376.233 kb on + strand, within MPMX19_04919at 376.233 kb on + strand, within MPMX19_04919at 376.233 kb on + strand, within MPMX19_04919at 376.234 kb on - strand, within MPMX19_04919at 376.234 kb on - strand, within MPMX19_04919at 376.234 kb on - strand, within MPMX19_04919at 376.234 kb on - strand, within MPMX19_04919at 376.449 kb on + strand, within MPMX19_04919at 376.450 kb on - strand, within MPMX19_04919at 376.620 kb on + strandat 376.620 kb on + strandat 376.620 kb on + strandat 376.620 kb on + strandat 376.620 kb on + strandat 376.620 kb on + strandat 376.621 kb on - strandat 376.621 kb on - strandat 376.621 kb on - strandat 376.621 kb on - strandat 376.621 kb on - strandat 376.621 kb on - strandat 376.621 kb on - strandat 376.621 kb on - strandat 376.621 kb on - strandat 376.621 kb on - strandat 376.621 kb on - strandat 376.756 kb on + strandat 376.756 kb on + strandat 376.756 kb on + strandat 376.757 kb on - strandat 376.757 kb on - strandat 376.757 kb on - strandat 376.787 kb on - strandat 376.787 kb on - strandat 376.787 kb on - strandat 376.787 kb on - strandat 376.883 kb on - strand, within MPMX19_04920at 376.883 kb on - strand, within MPMX19_04920at 376.883 kb on - strand, within MPMX19_04920at 376.883 kb on - strand, within MPMX19_04920at 376.883 kb on - strand, within MPMX19_04920at 376.883 kb on - strand, within MPMX19_04920at 376.883 kb on - strand, within MPMX19_04920at 376.930 kb on + strand, within MPMX19_04920at 376.930 kb on + strand, within MPMX19_04920at 376.930 kb on + strand, within MPMX19_04920at 376.931 kb on - strand, within MPMX19_04920at 376.931 kb on - strand, within MPMX19_04920at 376.931 kb on - strand, within MPMX19_04920at 376.931 kb on - strand, within MPMX19_04920at 376.936 kb on + strand, within MPMX19_04920at 376.937 kb on - strand, within MPMX19_04920at 376.937 kb on - strand, within MPMX19_04920at 376.937 kb on - strand, within MPMX19_04920at 376.937 kb on - strand, within MPMX19_04920at 377.281 kb on + strand, within MPMX19_04920at 377.281 kb on + strand, within MPMX19_04920at 377.281 kb on + strand, within MPMX19_04920at 377.281 kb on + strand, within MPMX19_04920at 377.282 kb on - strand, within MPMX19_04920at 377.282 kb on - strand, within MPMX19_04920at 377.282 kb on - strand, within MPMX19_04920at 377.282 kb on - strand, within MPMX19_04920at 377.282 kb on - strand, within MPMX19_04920at 377.282 kb on - strand, within MPMX19_04920at 377.282 kb on - strand, within MPMX19_04920at 377.282 kb on - strand, within MPMX19_04920at 377.282 kb on - strand, within MPMX19_04920at 377.341 kb on + strand, within MPMX19_04920at 377.342 kb on - strand, within MPMX19_04920at 377.342 kb on - strand, within MPMX19_04920

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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374,486 + MPMX19_04918 0.38 +0.1
374,486 + MPMX19_04918 0.38 +1.0
374,486 + MPMX19_04918 0.38 -0.6
374,486 + MPMX19_04918 0.38 -3.1
374,486 + MPMX19_04918 0.38 +0.0
374,486 + MPMX19_04918 0.38 -0.2
374,486 + MPMX19_04918 0.38 -1.2
374,486 + MPMX19_04918 0.38 -1.4
374,486 + MPMX19_04918 0.38 -0.6
374,486 + MPMX19_04918 0.38 -0.4
374,487 - MPMX19_04918 0.38 -1.1
374,487 - MPMX19_04918 0.38 +0.3
374,487 - MPMX19_04918 0.38 -1.3
374,487 - MPMX19_04918 0.38 -1.1
374,487 - MPMX19_04918 0.38 -0.0
374,487 - MPMX19_04918 0.38 -2.0
374,514 - MPMX19_04918 0.41 -0.2
374,514 - MPMX19_04918 0.41 -0.8
374,514 - MPMX19_04918 0.41 -1.6
374,526 + MPMX19_04918 0.42 -0.8
374,526 + MPMX19_04918 0.42 -1.8
374,526 + MPMX19_04918 0.42 -0.6
374,526 + MPMX19_04918 0.42 +0.6
374,526 + MPMX19_04918 0.42 -0.3
374,526 + MPMX19_04918 0.42 -0.7
374,526 + MPMX19_04918 0.42 +0.7
374,526 + MPMX19_04918 0.42 -0.0
374,527 - MPMX19_04918 0.42 -0.5
374,527 - MPMX19_04918 0.42 +1.0
374,527 - MPMX19_04918 0.42 +0.1
374,527 - MPMX19_04918 0.42 -1.0
374,527 - MPMX19_04918 0.42 -0.7
374,527 - MPMX19_04918 0.42 +1.9
374,693 + MPMX19_04918 0.55 +0.0
374,693 + MPMX19_04918 0.55 -0.5
374,693 + MPMX19_04918 0.55 -0.6
374,694 - MPMX19_04918 0.56 +0.2
374,694 - MPMX19_04918 0.56 +0.9
374,694 - MPMX19_04918 0.56 -0.7
374,814 - MPMX19_04918 0.66 +1.2
374,867 + MPMX19_04918 0.70 -0.6
374,868 - MPMX19_04918 0.70 -0.5
374,868 - MPMX19_04918 0.70 -1.5
374,868 - MPMX19_04918 0.70 -0.7
374,903 + MPMX19_04918 0.73 +0.9
374,903 + MPMX19_04918 0.73 -1.3
374,904 - MPMX19_04918 0.73 +0.2
374,904 - MPMX19_04918 0.73 -0.2
374,904 - MPMX19_04918 0.73 +0.4
374,904 - MPMX19_04918 0.73 +0.2
374,904 - MPMX19_04918 0.73 -0.8
374,915 + MPMX19_04918 0.74 -0.7
374,915 + MPMX19_04918 0.74 +0.3
374,915 + MPMX19_04918 0.74 -1.2
374,915 + MPMX19_04918 0.74 -1.0
374,916 - MPMX19_04918 0.74 -0.2
374,916 - MPMX19_04918 0.74 +1.3
374,916 - MPMX19_04918 0.74 -0.9
374,916 - MPMX19_04918 0.74 -0.2
374,916 - MPMX19_04918 0.74 -1.3
374,916 - MPMX19_04918 0.74 +0.3
374,916 - MPMX19_04918 0.74 +1.7
375,053 + MPMX19_04918 0.85 +0.1
375,053 + MPMX19_04918 0.85 -1.9
375,053 + MPMX19_04918 0.85 -1.6
375,054 - MPMX19_04918 0.85 -1.8
375,054 - MPMX19_04918 0.85 -0.0
375,054 - MPMX19_04918 0.85 -0.1
375,054 - MPMX19_04918 0.85 +0.9
375,054 - MPMX19_04918 0.85 -0.2
375,054 - MPMX19_04918 0.85 -0.1
375,054 - MPMX19_04918 0.85 -1.3
375,405 + -1.1
375,405 + +0.0
375,405 + -0.2
375,405 + -1.1
375,405 + -1.6
375,405 + -0.7
375,405 + +0.6
375,405 + -0.8
375,405 + -0.7
375,405 + -0.8
375,408 + +0.2
375,409 - +0.1
375,409 - -0.6
375,409 - -0.7
375,513 + +0.9
375,513 + -0.0
375,513 + +1.3
375,513 + -1.2
375,513 + +0.1
375,513 + +1.5
375,513 + -0.4
375,513 + -0.5
375,513 + -1.7
375,513 + -0.7
375,513 + -1.0
375,514 - -0.8
375,514 - +0.8
375,514 - -0.6
375,514 - -1.2
375,514 - +0.8
375,514 - +1.3
375,514 - +0.1
375,514 - -0.9
375,514 - -0.9
375,514 - -0.2
375,804 + MPMX19_04919 0.31 +0.7
375,804 + MPMX19_04919 0.31 +0.7
375,804 + MPMX19_04919 0.31 +0.8
375,804 + MPMX19_04919 0.31 -1.8
375,804 + MPMX19_04919 0.31 +1.6
375,804 + MPMX19_04919 0.31 -0.1
375,804 + MPMX19_04919 0.31 +0.8
375,804 + MPMX19_04919 0.31 -0.5
375,804 + MPMX19_04919 0.31 +0.3
375,804 + MPMX19_04919 0.31 -1.0
375,805 - MPMX19_04919 0.31 -0.1
375,805 - MPMX19_04919 0.31 -1.7
375,805 - MPMX19_04919 0.31 +0.2
375,805 - MPMX19_04919 0.31 +0.1
375,805 - MPMX19_04919 0.31 -0.1
375,805 - MPMX19_04919 0.31 +0.8
375,805 - MPMX19_04919 0.31 +0.9
375,805 - MPMX19_04919 0.31 -0.4
375,805 - MPMX19_04919 0.31 -0.4
375,805 - MPMX19_04919 0.31 +0.6
375,805 - MPMX19_04919 0.31 -0.0
375,805 - MPMX19_04919 0.31 -2.8
375,805 - MPMX19_04919 0.31 +0.2
376,233 + MPMX19_04919 0.64 -1.5
376,233 + MPMX19_04919 0.64 +1.0
376,233 + MPMX19_04919 0.64 -0.1
376,233 + MPMX19_04919 0.64 +0.7
376,233 + MPMX19_04919 0.64 +0.3
376,234 - MPMX19_04919 0.64 +1.3
376,234 - MPMX19_04919 0.64 -0.5
376,234 - MPMX19_04919 0.64 +0.3
376,234 - MPMX19_04919 0.64 +0.1
376,449 + MPMX19_04919 0.81 +1.7
376,450 - MPMX19_04919 0.81 +1.3
376,620 + -1.4
376,620 + +0.3
376,620 + -1.5
376,620 + -1.5
376,620 + -0.6
376,620 + -0.3
376,621 - +0.1
376,621 - +0.3
376,621 - -0.3
376,621 - +1.0
376,621 - -0.4
376,621 - -0.5
376,621 - +0.3
376,621 - +1.3
376,621 - -1.4
376,621 - -2.7
376,621 - +1.8
376,756 + -1.7
376,756 + -0.4
376,756 + -1.6
376,757 - -0.1
376,757 - +0.8
376,757 - -0.6
376,787 - -1.7
376,787 - -0.2
376,787 - -1.2
376,787 - -0.1
376,883 - MPMX19_04920 0.10 -0.7
376,883 - MPMX19_04920 0.10 +0.5
376,883 - MPMX19_04920 0.10 -0.1
376,883 - MPMX19_04920 0.10 +0.1
376,883 - MPMX19_04920 0.10 -2.1
376,883 - MPMX19_04920 0.10 +0.3
376,883 - MPMX19_04920 0.10 -1.4
376,930 + MPMX19_04920 0.14 +0.1
376,930 + MPMX19_04920 0.14 -2.4
376,930 + MPMX19_04920 0.14 -0.2
376,931 - MPMX19_04920 0.14 -1.2
376,931 - MPMX19_04920 0.14 -0.5
376,931 - MPMX19_04920 0.14 +1.6
376,931 - MPMX19_04920 0.14 -2.0
376,936 + MPMX19_04920 0.14 +0.8
376,937 - MPMX19_04920 0.14 +0.8
376,937 - MPMX19_04920 0.14 -1.1
376,937 - MPMX19_04920 0.14 -1.1
376,937 - MPMX19_04920 0.14 -0.5
377,281 + MPMX19_04920 0.38 -0.1
377,281 + MPMX19_04920 0.38 -2.2
377,281 + MPMX19_04920 0.38 -0.7
377,281 + MPMX19_04920 0.38 -0.4
377,282 - MPMX19_04920 0.38 -0.5
377,282 - MPMX19_04920 0.38 -1.1
377,282 - MPMX19_04920 0.38 -0.3
377,282 - MPMX19_04920 0.38 -1.5
377,282 - MPMX19_04920 0.38 -1.1
377,282 - MPMX19_04920 0.38 +1.2
377,282 - MPMX19_04920 0.38 -0.6
377,282 - MPMX19_04920 0.38 -0.6
377,282 - MPMX19_04920 0.38 +1.1
377,341 + MPMX19_04920 0.42 -0.3
377,342 - MPMX19_04920 0.42 +1.8
377,342 - MPMX19_04920 0.42 -0.5

Or see this region's nucleotide sequence