Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04826

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04825 and MPMX19_04826 are separated by 207 nucleotidesMPMX19_04826 and MPMX19_04827 overlap by 4 nucleotidesMPMX19_04827 and MPMX19_04828 are separated by 11 nucleotides MPMX19_04825: MPMX19_04825 - hypothetical protein, at 232,091 to 233,347 _04825 MPMX19_04826: MPMX19_04826 - hypothetical protein, at 233,555 to 234,616 _04826 MPMX19_04827: MPMX19_04827 - hypothetical protein, at 234,613 to 235,038 _04827 MPMX19_04828: MPMX19_04828 - hypothetical protein, at 235,050 to 236,141 _04828 Position (kb) 233 234 235Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 232.968 kb on + strand, within MPMX19_04825at 232.968 kb on + strand, within MPMX19_04825at 232.968 kb on + strand, within MPMX19_04825at 232.969 kb on - strand, within MPMX19_04825at 232.969 kb on - strand, within MPMX19_04825at 232.969 kb on - strand, within MPMX19_04825at 232.969 kb on - strand, within MPMX19_04825at 232.969 kb on - strand, within MPMX19_04825at 233.395 kb on + strandat 233.395 kb on + strandat 233.395 kb on + strandat 233.503 kb on - strandat 233.527 kb on - strandat 233.888 kb on + strand, within MPMX19_04826at 233.888 kb on + strand, within MPMX19_04826at 233.889 kb on - strand, within MPMX19_04826at 233.889 kb on - strand, within MPMX19_04826at 234.146 kb on + strand, within MPMX19_04826at 234.146 kb on + strand, within MPMX19_04826at 234.146 kb on + strand, within MPMX19_04826at 234.146 kb on + strand, within MPMX19_04826at 234.147 kb on - strand, within MPMX19_04826at 234.147 kb on - strand, within MPMX19_04826at 234.147 kb on - strand, within MPMX19_04826at 234.147 kb on - strand, within MPMX19_04826at 234.147 kb on - strand, within MPMX19_04826at 234.147 kb on - strand, within MPMX19_04826at 234.164 kb on - strand, within MPMX19_04826at 234.634 kb on + strandat 234.635 kb on - strandat 234.934 kb on + strand, within MPMX19_04827at 234.934 kb on + strand, within MPMX19_04827at 234.934 kb on + strand, within MPMX19_04827at 234.934 kb on + strand, within MPMX19_04827at 234.934 kb on + strand, within MPMX19_04827at 234.934 kb on + strand, within MPMX19_04827at 234.934 kb on + strand, within MPMX19_04827at 234.935 kb on - strand, within MPMX19_04827at 234.935 kb on - strand, within MPMX19_04827at 234.935 kb on - strand, within MPMX19_04827at 234.935 kb on - strand, within MPMX19_04827at 234.935 kb on - strand, within MPMX19_04827at 234.935 kb on - strand, within MPMX19_04827at 234.935 kb on - strand, within MPMX19_04827at 234.935 kb on - strand, within MPMX19_04827at 234.935 kb on - strand, within MPMX19_04827at 234.935 kb on - strand, within MPMX19_04827at 234.935 kb on - strand, within MPMX19_04827at 235.251 kb on + strand, within MPMX19_04828at 235.251 kb on + strand, within MPMX19_04828at 235.251 kb on + strand, within MPMX19_04828at 235.251 kb on + strand, within MPMX19_04828at 235.251 kb on + strand, within MPMX19_04828at 235.251 kb on + strand, within MPMX19_04828at 235.251 kb on + strand, within MPMX19_04828at 235.251 kb on + strand, within MPMX19_04828at 235.252 kb on - strand, within MPMX19_04828at 235.252 kb on - strand, within MPMX19_04828at 235.252 kb on - strand, within MPMX19_04828at 235.252 kb on - strand, within MPMX19_04828at 235.252 kb on - strand, within MPMX19_04828at 235.312 kb on - strand, within MPMX19_04828at 235.312 kb on - strand, within MPMX19_04828at 235.335 kb on + strand, within MPMX19_04828at 235.335 kb on + strand, within MPMX19_04828at 235.335 kb on + strand, within MPMX19_04828at 235.335 kb on + strand, within MPMX19_04828at 235.335 kb on + strand, within MPMX19_04828at 235.335 kb on + strand, within MPMX19_04828at 235.335 kb on + strand, within MPMX19_04828at 235.335 kb on + strand, within MPMX19_04828at 235.335 kb on + strand, within MPMX19_04828at 235.335 kb on + strand, within MPMX19_04828at 235.335 kb on + strand, within MPMX19_04828at 235.336 kb on - strand, within MPMX19_04828at 235.336 kb on - strand, within MPMX19_04828at 235.336 kb on - strand, within MPMX19_04828at 235.336 kb on - strand, within MPMX19_04828at 235.336 kb on - strand, within MPMX19_04828at 235.336 kb on - strand, within MPMX19_04828at 235.336 kb on - strand, within MPMX19_04828at 235.336 kb on - strand, within MPMX19_04828at 235.336 kb on - strand, within MPMX19_04828at 235.336 kb on - strand, within MPMX19_04828at 235.336 kb on - strand, within MPMX19_04828at 235.336 kb on - strand, within MPMX19_04828at 235.336 kb on - strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.522 kb on - strand, within MPMX19_04828at 235.522 kb on - strand, within MPMX19_04828at 235.522 kb on - strand, within MPMX19_04828at 235.522 kb on - strand, within MPMX19_04828at 235.522 kb on - strand, within MPMX19_04828at 235.522 kb on - strand, within MPMX19_04828at 235.522 kb on - strand, within MPMX19_04828at 235.522 kb on - strand, within MPMX19_04828at 235.522 kb on - strand, within MPMX19_04828at 235.581 kb on + strand, within MPMX19_04828at 235.581 kb on + strand, within MPMX19_04828at 235.582 kb on - strand, within MPMX19_04828at 235.582 kb on - strand, within MPMX19_04828at 235.582 kb on - strand, within MPMX19_04828at 235.614 kb on + strand, within MPMX19_04828at 235.615 kb on - strand, within MPMX19_04828at 235.615 kb on - strand, within MPMX19_04828at 235.615 kb on - strand, within MPMX19_04828at 235.615 kb on - strand, within MPMX19_04828at 235.615 kb on - strand, within MPMX19_04828

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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232,968 + MPMX19_04825 0.70 +0.6
232,968 + MPMX19_04825 0.70 -0.8
232,968 + MPMX19_04825 0.70 +0.3
232,969 - MPMX19_04825 0.70 -0.4
232,969 - MPMX19_04825 0.70 +0.6
232,969 - MPMX19_04825 0.70 -0.5
232,969 - MPMX19_04825 0.70 -0.7
232,969 - MPMX19_04825 0.70 -2.5
233,395 + -0.5
233,395 + -0.2
233,395 + +0.9
233,503 - -1.5
233,527 - -2.3
233,888 + MPMX19_04826 0.31 +0.7
233,888 + MPMX19_04826 0.31 -0.8
233,889 - MPMX19_04826 0.31 -0.7
233,889 - MPMX19_04826 0.31 -0.5
234,146 + MPMX19_04826 0.56 +0.6
234,146 + MPMX19_04826 0.56 -1.2
234,146 + MPMX19_04826 0.56 +0.0
234,146 + MPMX19_04826 0.56 -1.4
234,147 - MPMX19_04826 0.56 -1.0
234,147 - MPMX19_04826 0.56 +0.5
234,147 - MPMX19_04826 0.56 +1.7
234,147 - MPMX19_04826 0.56 +0.7
234,147 - MPMX19_04826 0.56 -0.3
234,147 - MPMX19_04826 0.56 +1.2
234,164 - MPMX19_04826 0.57 +1.6
234,634 + -0.1
234,635 - -0.8
234,934 + MPMX19_04827 0.75 -0.8
234,934 + MPMX19_04827 0.75 -0.1
234,934 + MPMX19_04827 0.75 +1.3
234,934 + MPMX19_04827 0.75 -0.1
234,934 + MPMX19_04827 0.75 -1.2
234,934 + MPMX19_04827 0.75 -0.8
234,934 + MPMX19_04827 0.75 -0.4
234,935 - MPMX19_04827 0.76 -0.5
234,935 - MPMX19_04827 0.76 +1.0
234,935 - MPMX19_04827 0.76 +0.2
234,935 - MPMX19_04827 0.76 -0.9
234,935 - MPMX19_04827 0.76 -1.2
234,935 - MPMX19_04827 0.76 +0.3
234,935 - MPMX19_04827 0.76 -1.0
234,935 - MPMX19_04827 0.76 +0.3
234,935 - MPMX19_04827 0.76 -1.3
234,935 - MPMX19_04827 0.76 -0.8
234,935 - MPMX19_04827 0.76 -0.4
235,251 + MPMX19_04828 0.18 +0.3
235,251 + MPMX19_04828 0.18 +0.3
235,251 + MPMX19_04828 0.18 -0.8
235,251 + MPMX19_04828 0.18 -0.5
235,251 + MPMX19_04828 0.18 +0.3
235,251 + MPMX19_04828 0.18 +0.3
235,251 + MPMX19_04828 0.18 -1.0
235,251 + MPMX19_04828 0.18 +0.1
235,252 - MPMX19_04828 0.18 -0.2
235,252 - MPMX19_04828 0.18 -0.8
235,252 - MPMX19_04828 0.18 -0.5
235,252 - MPMX19_04828 0.18 -2.8
235,252 - MPMX19_04828 0.18 +0.1
235,312 - MPMX19_04828 0.24 +0.6
235,312 - MPMX19_04828 0.24 +0.5
235,335 + MPMX19_04828 0.26 -0.8
235,335 + MPMX19_04828 0.26 -2.1
235,335 + MPMX19_04828 0.26 +1.9
235,335 + MPMX19_04828 0.26 -0.9
235,335 + MPMX19_04828 0.26 -0.6
235,335 + MPMX19_04828 0.26 -2.1
235,335 + MPMX19_04828 0.26 +1.0
235,335 + MPMX19_04828 0.26 -0.3
235,335 + MPMX19_04828 0.26 +0.0
235,335 + MPMX19_04828 0.26 -1.5
235,335 + MPMX19_04828 0.26 -2.1
235,336 - MPMX19_04828 0.26 -0.5
235,336 - MPMX19_04828 0.26 -0.8
235,336 - MPMX19_04828 0.26 -0.5
235,336 - MPMX19_04828 0.26 -0.1
235,336 - MPMX19_04828 0.26 +1.2
235,336 - MPMX19_04828 0.26 -0.5
235,336 - MPMX19_04828 0.26 +0.1
235,336 - MPMX19_04828 0.26 -1.5
235,336 - MPMX19_04828 0.26 -0.6
235,336 - MPMX19_04828 0.26 +0.7
235,336 - MPMX19_04828 0.26 +0.3
235,336 - MPMX19_04828 0.26 -0.7
235,336 - MPMX19_04828 0.26 -1.0
235,521 + MPMX19_04828 0.43 -0.8
235,521 + MPMX19_04828 0.43 -0.7
235,521 + MPMX19_04828 0.43 -0.3
235,521 + MPMX19_04828 0.43 -0.8
235,521 + MPMX19_04828 0.43 -2.5
235,521 + MPMX19_04828 0.43 -1.3
235,521 + MPMX19_04828 0.43 -0.5
235,521 + MPMX19_04828 0.43 -0.1
235,521 + MPMX19_04828 0.43 -0.1
235,521 + MPMX19_04828 0.43 +0.7
235,521 + MPMX19_04828 0.43 -1.3
235,521 + MPMX19_04828 0.43 -1.8
235,521 + MPMX19_04828 0.43 +0.2
235,521 + MPMX19_04828 0.43 -0.5
235,522 - MPMX19_04828 0.43 -0.1
235,522 - MPMX19_04828 0.43 -0.2
235,522 - MPMX19_04828 0.43 +0.3
235,522 - MPMX19_04828 0.43 -2.4
235,522 - MPMX19_04828 0.43 -1.8
235,522 - MPMX19_04828 0.43 +0.0
235,522 - MPMX19_04828 0.43 +0.5
235,522 - MPMX19_04828 0.43 +1.9
235,522 - MPMX19_04828 0.43 -0.7
235,581 + MPMX19_04828 0.49 +0.6
235,581 + MPMX19_04828 0.49 +0.6
235,582 - MPMX19_04828 0.49 +0.8
235,582 - MPMX19_04828 0.49 -0.2
235,582 - MPMX19_04828 0.49 -0.5
235,614 + MPMX19_04828 0.52 -2.0
235,615 - MPMX19_04828 0.52 -1.6
235,615 - MPMX19_04828 0.52 +1.9
235,615 - MPMX19_04828 0.52 +0.0
235,615 - MPMX19_04828 0.52 -1.3
235,615 - MPMX19_04828 0.52 -2.8

Or see this region's nucleotide sequence