Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04454

Experiment: NL-CCM; spin-x control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04453 and MPMX19_04454 are separated by 86 nucleotidesMPMX19_04454 and MPMX19_04455 are separated by 433 nucleotidesMPMX19_04455 and MPMX19_04456 are separated by 99 nucleotides MPMX19_04453: MPMX19_04453 - Aminoalkylphosphonate N-acetyltransferase, at 821,092 to 821,535 _04453 MPMX19_04454: MPMX19_04454 - hypothetical protein, at 821,622 to 821,837 _04454 MPMX19_04455: MPMX19_04455 - Arabinose 5-phosphate isomerase KdsD, at 822,271 to 822,726 _04455 MPMX19_04456: MPMX19_04456 - Histone deacetylase-like amidohydrolase, at 822,826 to 823,755 _04456 Position (kb) 821 822Strain fitness (log2 ratio) -3 -2 -1 0 1at 820.630 kb on + strandat 820.842 kb on + strandat 820.853 kb on + strandat 820.937 kb on + strandat 820.937 kb on + strandat 820.937 kb on + strandat 820.937 kb on + strandat 820.938 kb on - strandat 821.010 kb on + strandat 821.011 kb on - strandat 821.034 kb on + strandat 821.034 kb on + strandat 821.034 kb on + strandat 821.034 kb on + strandat 821.034 kb on + strandat 821.034 kb on + strandat 821.070 kb on + strandat 821.070 kb on + strandat 821.071 kb on - strandat 821.076 kb on + strandat 821.076 kb on + strandat 821.076 kb on + strandat 821.077 kb on - strandat 821.077 kb on - strandat 821.156 kb on - strand, within MPMX19_04453at 821.203 kb on + strand, within MPMX19_04453at 821.203 kb on + strand, within MPMX19_04453at 821.204 kb on - strand, within MPMX19_04453at 821.204 kb on - strand, within MPMX19_04453at 821.239 kb on + strand, within MPMX19_04453at 821.239 kb on + strand, within MPMX19_04453at 821.239 kb on + strand, within MPMX19_04453at 821.239 kb on + strand, within MPMX19_04453at 821.239 kb on + strand, within MPMX19_04453at 821.239 kb on + strand, within MPMX19_04453at 821.239 kb on + strand, within MPMX19_04453at 821.239 kb on + strand, within MPMX19_04453at 821.240 kb on - strand, within MPMX19_04453at 821.240 kb on - strand, within MPMX19_04453at 821.240 kb on - strand, within MPMX19_04453at 821.240 kb on - strand, within MPMX19_04453at 821.240 kb on - strand, within MPMX19_04453at 821.240 kb on - strand, within MPMX19_04453at 821.240 kb on - strand, within MPMX19_04453at 821.241 kb on + strand, within MPMX19_04453at 821.241 kb on + strand, within MPMX19_04453at 821.241 kb on + strand, within MPMX19_04453at 821.241 kb on + strand, within MPMX19_04453at 821.241 kb on + strand, within MPMX19_04453at 821.242 kb on - strand, within MPMX19_04453at 821.242 kb on - strand, within MPMX19_04453at 821.242 kb on - strand, within MPMX19_04453at 821.242 kb on - strand, within MPMX19_04453at 821.242 kb on - strand, within MPMX19_04453at 821.323 kb on + strand, within MPMX19_04453at 821.323 kb on + strand, within MPMX19_04453at 821.323 kb on + strand, within MPMX19_04453at 821.323 kb on + strand, within MPMX19_04453at 821.323 kb on + strand, within MPMX19_04453at 821.323 kb on + strand, within MPMX19_04453at 821.323 kb on + strand, within MPMX19_04453at 821.323 kb on + strand, within MPMX19_04453at 821.323 kb on + strand, within MPMX19_04453at 821.323 kb on + strand, within MPMX19_04453at 821.324 kb on - strand, within MPMX19_04453at 821.324 kb on - strand, within MPMX19_04453at 821.324 kb on - strand, within MPMX19_04453at 821.324 kb on - strand, within MPMX19_04453at 821.324 kb on - strand, within MPMX19_04453at 821.324 kb on - strand, within MPMX19_04453at 821.324 kb on - strand, within MPMX19_04453at 821.324 kb on - strand, within MPMX19_04453at 821.324 kb on - strand, within MPMX19_04453at 821.324 kb on - strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.368 kb on + strand, within MPMX19_04453at 821.368 kb on + strand, within MPMX19_04453at 821.368 kb on + strand, within MPMX19_04453at 821.368 kb on + strand, within MPMX19_04453at 821.368 kb on + strand, within MPMX19_04453at 821.368 kb on + strand, within MPMX19_04453at 821.368 kb on + strand, within MPMX19_04453at 821.369 kb on - strand, within MPMX19_04453at 821.369 kb on - strand, within MPMX19_04453at 821.369 kb on - strand, within MPMX19_04453at 821.369 kb on - strand, within MPMX19_04453at 821.479 kb on + strand, within MPMX19_04453at 821.479 kb on + strand, within MPMX19_04453at 821.479 kb on + strand, within MPMX19_04453at 821.479 kb on + strand, within MPMX19_04453at 821.480 kb on - strand, within MPMX19_04453at 821.480 kb on - strand, within MPMX19_04453at 821.480 kb on - strand, within MPMX19_04453at 821.480 kb on - strand, within MPMX19_04453at 821.480 kb on - strand, within MPMX19_04453at 821.480 kb on - strand, within MPMX19_04453at 821.480 kb on - strand, within MPMX19_04453at 821.480 kb on - strand, within MPMX19_04453at 821.480 kb on - strand, within MPMX19_04453at 821.480 kb on - strand, within MPMX19_04453at 821.480 kb on - strand, within MPMX19_04453at 821.547 kb on + strandat 821.548 kb on - strandat 821.548 kb on - strandat 821.548 kb on - strandat 821.548 kb on - strandat 821.548 kb on - strandat 821.777 kb on + strand, within MPMX19_04454at 821.777 kb on + strand, within MPMX19_04454at 821.777 kb on + strand, within MPMX19_04454at 821.777 kb on + strand, within MPMX19_04454at 821.777 kb on + strand, within MPMX19_04454at 821.777 kb on + strand, within MPMX19_04454at 821.777 kb on + strand, within MPMX19_04454at 821.777 kb on + strand, within MPMX19_04454at 821.777 kb on + strand, within MPMX19_04454at 821.777 kb on + strand, within MPMX19_04454at 821.778 kb on - strand, within MPMX19_04454at 821.778 kb on - strand, within MPMX19_04454at 821.778 kb on - strand, within MPMX19_04454at 821.778 kb on - strand, within MPMX19_04454at 821.778 kb on - strand, within MPMX19_04454at 821.778 kb on - strand, within MPMX19_04454at 821.778 kb on - strand, within MPMX19_04454at 821.778 kb on - strand, within MPMX19_04454at 821.778 kb on - strand, within MPMX19_04454at 821.778 kb on - strand, within MPMX19_04454at 821.778 kb on - strand, within MPMX19_04454at 821.778 kb on - strand, within MPMX19_04454at 821.779 kb on + strand, within MPMX19_04454at 821.779 kb on + strand, within MPMX19_04454at 821.779 kb on + strand, within MPMX19_04454at 821.779 kb on + strand, within MPMX19_04454at 821.779 kb on + strand, within MPMX19_04454at 821.780 kb on - strand, within MPMX19_04454at 821.780 kb on - strand, within MPMX19_04454at 821.780 kb on - strand, within MPMX19_04454at 822.045 kb on + strandat 822.045 kb on + strandat 822.045 kb on + strandat 822.046 kb on - strandat 822.088 kb on + strandat 822.088 kb on + strandat 822.088 kb on + strandat 822.088 kb on + strandat 822.088 kb on + strandat 822.089 kb on - strandat 822.089 kb on - strandat 822.089 kb on - strandat 822.089 kb on - strandat 822.089 kb on - strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.747 kb on + strandat 822.748 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
remove
820,630 + -1.4
820,842 + -0.4
820,853 + -1.3
820,937 + -0.6
820,937 + +0.6
820,937 + -1.8
820,937 + +1.6
820,938 - +0.3
821,010 + -2.1
821,011 - -1.4
821,034 + +0.7
821,034 + +0.8
821,034 + +0.5
821,034 + -0.6
821,034 + -0.9
821,034 + -1.6
821,070 + +0.7
821,070 + -0.1
821,071 - -3.3
821,076 + -2.5
821,076 + -2.3
821,076 + +1.6
821,077 - -1.4
821,077 - -0.3
821,156 - MPMX19_04453 0.14 -0.8
821,203 + MPMX19_04453 0.25 +0.4
821,203 + MPMX19_04453 0.25 -0.8
821,204 - MPMX19_04453 0.25 -1.6
821,204 - MPMX19_04453 0.25 -0.6
821,239 + MPMX19_04453 0.33 -0.3
821,239 + MPMX19_04453 0.33 -3.5
821,239 + MPMX19_04453 0.33 -0.0
821,239 + MPMX19_04453 0.33 -0.0
821,239 + MPMX19_04453 0.33 +0.6
821,239 + MPMX19_04453 0.33 -0.2
821,239 + MPMX19_04453 0.33 +0.1
821,239 + MPMX19_04453 0.33 -0.9
821,240 - MPMX19_04453 0.33 +0.2
821,240 - MPMX19_04453 0.33 -1.6
821,240 - MPMX19_04453 0.33 -1.1
821,240 - MPMX19_04453 0.33 +0.1
821,240 - MPMX19_04453 0.33 -0.9
821,240 - MPMX19_04453 0.33 -0.2
821,240 - MPMX19_04453 0.33 -0.5
821,241 + MPMX19_04453 0.34 -0.8
821,241 + MPMX19_04453 0.34 -1.8
821,241 + MPMX19_04453 0.34 -0.2
821,241 + MPMX19_04453 0.34 -0.6
821,241 + MPMX19_04453 0.34 -1.2
821,242 - MPMX19_04453 0.34 -0.8
821,242 - MPMX19_04453 0.34 -0.0
821,242 - MPMX19_04453 0.34 +1.1
821,242 - MPMX19_04453 0.34 -2.0
821,242 - MPMX19_04453 0.34 -0.5
821,323 + MPMX19_04453 0.52 -0.5
821,323 + MPMX19_04453 0.52 -1.8
821,323 + MPMX19_04453 0.52 -0.6
821,323 + MPMX19_04453 0.52 -0.8
821,323 + MPMX19_04453 0.52 -0.9
821,323 + MPMX19_04453 0.52 -2.5
821,323 + MPMX19_04453 0.52 -0.5
821,323 + MPMX19_04453 0.52 -1.6
821,323 + MPMX19_04453 0.52 -0.3
821,323 + MPMX19_04453 0.52 -1.4
821,324 - MPMX19_04453 0.52 -0.0
821,324 - MPMX19_04453 0.52 -0.8
821,324 - MPMX19_04453 0.52 -1.3
821,324 - MPMX19_04453 0.52 -2.7
821,324 - MPMX19_04453 0.52 -1.2
821,324 - MPMX19_04453 0.52 -0.6
821,324 - MPMX19_04453 0.52 -2.9
821,324 - MPMX19_04453 0.52 -0.4
821,324 - MPMX19_04453 0.52 -1.8
821,324 - MPMX19_04453 0.52 -0.3
821,329 + MPMX19_04453 0.53 -1.1
821,329 + MPMX19_04453 0.53 -0.7
821,329 + MPMX19_04453 0.53 +0.1
821,329 + MPMX19_04453 0.53 -0.4
821,329 + MPMX19_04453 0.53 +0.0
821,329 + MPMX19_04453 0.53 -1.6
821,329 + MPMX19_04453 0.53 -0.3
821,329 + MPMX19_04453 0.53 +0.4
821,329 + MPMX19_04453 0.53 +1.4
821,329 + MPMX19_04453 0.53 -0.6
821,329 + MPMX19_04453 0.53 -0.6
821,329 + MPMX19_04453 0.53 -1.2
821,329 + MPMX19_04453 0.53 -0.4
821,329 + MPMX19_04453 0.53 -0.5
821,329 + MPMX19_04453 0.53 +1.0
821,329 + MPMX19_04453 0.53 -2.3
821,329 + MPMX19_04453 0.53 +0.4
821,329 + MPMX19_04453 0.53 -0.5
821,329 + MPMX19_04453 0.53 -2.8
821,329 + MPMX19_04453 0.53 -0.9
821,329 + MPMX19_04453 0.53 -0.4
821,329 + MPMX19_04453 0.53 +0.8
821,329 + MPMX19_04453 0.53 -1.3
821,329 + MPMX19_04453 0.53 +0.8
821,329 + MPMX19_04453 0.53 -0.4
821,329 + MPMX19_04453 0.53 +0.7
821,329 + MPMX19_04453 0.53 +0.3
821,329 + MPMX19_04453 0.53 -2.0
821,329 + MPMX19_04453 0.53 -1.6
821,329 + MPMX19_04453 0.53 +0.8
821,329 + MPMX19_04453 0.53 -0.2
821,329 + MPMX19_04453 0.53 -2.2
821,329 + MPMX19_04453 0.53 +0.5
821,329 + MPMX19_04453 0.53 -2.0
821,329 + MPMX19_04453 0.53 +0.5
821,330 - MPMX19_04453 0.54 +0.7
821,330 - MPMX19_04453 0.54 -1.1
821,330 - MPMX19_04453 0.54 -0.4
821,330 - MPMX19_04453 0.54 -1.3
821,330 - MPMX19_04453 0.54 -1.5
821,330 - MPMX19_04453 0.54 -0.9
821,330 - MPMX19_04453 0.54 -1.7
821,330 - MPMX19_04453 0.54 -0.9
821,330 - MPMX19_04453 0.54 +1.6
821,330 - MPMX19_04453 0.54 -2.0
821,330 - MPMX19_04453 0.54 -0.5
821,330 - MPMX19_04453 0.54 -0.5
821,330 - MPMX19_04453 0.54 -0.6
821,330 - MPMX19_04453 0.54 -1.0
821,330 - MPMX19_04453 0.54 -1.1
821,330 - MPMX19_04453 0.54 +0.1
821,330 - MPMX19_04453 0.54 -0.3
821,330 - MPMX19_04453 0.54 -0.9
821,330 - MPMX19_04453 0.54 +0.3
821,330 - MPMX19_04453 0.54 -0.4
821,330 - MPMX19_04453 0.54 +1.0
821,330 - MPMX19_04453 0.54 -0.0
821,330 - MPMX19_04453 0.54 +0.0
821,330 - MPMX19_04453 0.54 -1.6
821,330 - MPMX19_04453 0.54 -0.8
821,330 - MPMX19_04453 0.54 -0.9
821,330 - MPMX19_04453 0.54 -0.3
821,330 - MPMX19_04453 0.54 -1.0
821,330 - MPMX19_04453 0.54 +0.6
821,330 - MPMX19_04453 0.54 -0.5
821,330 - MPMX19_04453 0.54 -0.0
821,330 - MPMX19_04453 0.54 -1.0
821,368 + MPMX19_04453 0.62 +0.2
821,368 + MPMX19_04453 0.62 -2.4
821,368 + MPMX19_04453 0.62 +1.2
821,368 + MPMX19_04453 0.62 -0.5
821,368 + MPMX19_04453 0.62 +0.9
821,368 + MPMX19_04453 0.62 +1.1
821,368 + MPMX19_04453 0.62 +0.1
821,369 - MPMX19_04453 0.62 +0.8
821,369 - MPMX19_04453 0.62 +0.7
821,369 - MPMX19_04453 0.62 +0.4
821,369 - MPMX19_04453 0.62 -0.6
821,479 + MPMX19_04453 0.87 -0.7
821,479 + MPMX19_04453 0.87 +0.1
821,479 + MPMX19_04453 0.87 -1.0
821,479 + MPMX19_04453 0.87 +0.0
821,480 - MPMX19_04453 0.87 -1.3
821,480 - MPMX19_04453 0.87 -1.7
821,480 - MPMX19_04453 0.87 -0.4
821,480 - MPMX19_04453 0.87 +1.1
821,480 - MPMX19_04453 0.87 -0.6
821,480 - MPMX19_04453 0.87 -0.2
821,480 - MPMX19_04453 0.87 +0.0
821,480 - MPMX19_04453 0.87 -1.2
821,480 - MPMX19_04453 0.87 -0.5
821,480 - MPMX19_04453 0.87 -2.9
821,480 - MPMX19_04453 0.87 -2.1
821,547 + +0.9
821,548 - -1.3
821,548 - +0.2
821,548 - +0.0
821,548 - -1.8
821,548 - +0.4
821,777 + MPMX19_04454 0.72 -1.0
821,777 + MPMX19_04454 0.72 -0.1
821,777 + MPMX19_04454 0.72 -0.0
821,777 + MPMX19_04454 0.72 -0.9
821,777 + MPMX19_04454 0.72 +1.0
821,777 + MPMX19_04454 0.72 -0.5
821,777 + MPMX19_04454 0.72 -1.3
821,777 + MPMX19_04454 0.72 -0.6
821,777 + MPMX19_04454 0.72 -0.6
821,777 + MPMX19_04454 0.72 -0.6
821,778 - MPMX19_04454 0.72 +0.4
821,778 - MPMX19_04454 0.72 -3.7
821,778 - MPMX19_04454 0.72 -0.6
821,778 - MPMX19_04454 0.72 -2.4
821,778 - MPMX19_04454 0.72 -0.0
821,778 - MPMX19_04454 0.72 +1.4
821,778 - MPMX19_04454 0.72 +0.4
821,778 - MPMX19_04454 0.72 +0.6
821,778 - MPMX19_04454 0.72 -0.2
821,778 - MPMX19_04454 0.72 +0.7
821,778 - MPMX19_04454 0.72 +0.8
821,778 - MPMX19_04454 0.72 -0.6
821,779 + MPMX19_04454 0.73 +0.7
821,779 + MPMX19_04454 0.73 -0.5
821,779 + MPMX19_04454 0.73 +0.6
821,779 + MPMX19_04454 0.73 +1.4
821,779 + MPMX19_04454 0.73 +0.6
821,780 - MPMX19_04454 0.73 +0.6
821,780 - MPMX19_04454 0.73 +0.8
821,780 - MPMX19_04454 0.73 -0.6
822,045 + +1.0
822,045 + +1.0
822,045 + -1.0
822,046 - +0.5
822,088 + -2.2
822,088 + +0.1
822,088 + -0.3
822,088 + -0.0
822,088 + -0.5
822,089 - -1.7
822,089 - -1.6
822,089 - -2.6
822,089 - -2.1
822,089 - -1.1
822,715 + +1.6
822,715 + -2.0
822,715 + -2.0
822,715 + +0.5
822,715 + -1.5
822,715 + -2.5
822,715 + -0.9
822,715 + -0.6
822,715 + -0.0
822,715 + -0.1
822,715 + -1.3
822,715 + +0.6
822,715 + -0.6
822,716 - -0.1
822,716 - -0.5
822,716 - -0.2
822,716 - +0.2
822,716 - -1.0
822,716 - +0.9
822,716 - -2.0
822,716 - +0.1
822,716 - -0.0
822,716 - +0.3
822,716 - -1.1
822,716 - -1.6
822,716 - -0.5
822,716 - -0.2
822,747 + -1.1
822,748 - -2.0

Or see this region's nucleotide sequence