Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04047

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04046 and MPMX19_04047 are separated by 130 nucleotidesMPMX19_04047 and MPMX19_04048 overlap by 14 nucleotidesMPMX19_04048 and MPMX19_04049 are separated by 22 nucleotides MPMX19_04046: MPMX19_04046 - hypothetical protein, at 348,680 to 349,567 _04046 MPMX19_04047: MPMX19_04047 - 2-haloacrylate reductase, at 349,698 to 350,675 _04047 MPMX19_04048: MPMX19_04048 - putative N-acetyltransferase YafP, at 350,662 to 351,165 _04048 MPMX19_04049: MPMX19_04049 - Aldose sugar dehydrogenase YliI, at 351,188 to 352,369 _04049 Position (kb) 349 350 351Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 349.017 kb on + strand, within MPMX19_04046at 349.018 kb on - strand, within MPMX19_04046at 349.018 kb on - strand, within MPMX19_04046at 349.059 kb on + strand, within MPMX19_04046at 349.059 kb on + strand, within MPMX19_04046at 349.059 kb on + strand, within MPMX19_04046at 349.059 kb on + strand, within MPMX19_04046at 349.074 kb on + strand, within MPMX19_04046at 349.074 kb on + strand, within MPMX19_04046at 349.075 kb on - strand, within MPMX19_04046at 349.075 kb on - strand, within MPMX19_04046at 349.075 kb on - strand, within MPMX19_04046at 349.075 kb on - strand, within MPMX19_04046at 349.405 kb on - strand, within MPMX19_04046at 349.405 kb on - strand, within MPMX19_04046at 349.405 kb on - strand, within MPMX19_04046at 349.405 kb on - strand, within MPMX19_04046at 349.606 kb on + strandat 349.698 kb on - strandat 349.698 kb on - strandat 349.698 kb on - strandat 349.833 kb on + strand, within MPMX19_04047at 349.833 kb on + strand, within MPMX19_04047at 349.833 kb on + strand, within MPMX19_04047at 349.833 kb on + strand, within MPMX19_04047at 349.833 kb on + strand, within MPMX19_04047at 349.833 kb on + strand, within MPMX19_04047at 349.833 kb on + strand, within MPMX19_04047at 349.833 kb on + strand, within MPMX19_04047at 349.833 kb on + strand, within MPMX19_04047at 349.833 kb on + strand, within MPMX19_04047at 349.833 kb on + strand, within MPMX19_04047at 349.833 kb on + strand, within MPMX19_04047at 349.833 kb on + strand, within MPMX19_04047at 349.834 kb on - strand, within MPMX19_04047at 349.834 kb on - strand, within MPMX19_04047at 349.834 kb on - strand, within MPMX19_04047at 349.834 kb on - strand, within MPMX19_04047at 349.834 kb on - strand, within MPMX19_04047at 349.834 kb on - strand, within MPMX19_04047at 349.834 kb on - strand, within MPMX19_04047at 349.834 kb on - strand, within MPMX19_04047at 349.867 kb on - strand, within MPMX19_04047at 349.867 kb on - strand, within MPMX19_04047at 349.867 kb on - strand, within MPMX19_04047at 349.980 kb on + strand, within MPMX19_04047at 350.502 kb on + strand, within MPMX19_04047at 350.502 kb on + strand, within MPMX19_04047at 350.502 kb on + strand, within MPMX19_04047at 350.502 kb on + strand, within MPMX19_04047at 350.502 kb on + strand, within MPMX19_04047at 350.502 kb on + strand, within MPMX19_04047at 350.502 kb on + strand, within MPMX19_04047at 350.502 kb on + strand, within MPMX19_04047at 350.502 kb on + strand, within MPMX19_04047at 350.502 kb on + strand, within MPMX19_04047at 350.502 kb on + strand, within MPMX19_04047at 350.502 kb on + strand, within MPMX19_04047at 350.502 kb on + strand, within MPMX19_04047at 350.502 kb on + strand, within MPMX19_04047at 350.502 kb on + strand, within MPMX19_04047at 350.502 kb on - strand, within MPMX19_04047at 350.503 kb on - strand, within MPMX19_04047at 350.503 kb on - strand, within MPMX19_04047at 350.503 kb on - strand, within MPMX19_04047at 350.503 kb on - strand, within MPMX19_04047at 350.503 kb on - strand, within MPMX19_04047at 350.503 kb on - strand, within MPMX19_04047at 350.503 kb on - strand, within MPMX19_04047at 350.503 kb on - strand, within MPMX19_04047at 350.503 kb on - strand, within MPMX19_04047at 350.503 kb on - strand, within MPMX19_04047at 350.503 kb on - strand, within MPMX19_04047at 350.523 kb on + strand, within MPMX19_04047at 350.523 kb on + strand, within MPMX19_04047at 350.523 kb on + strand, within MPMX19_04047at 350.523 kb on + strand, within MPMX19_04047at 350.523 kb on + strand, within MPMX19_04047at 350.523 kb on + strand, within MPMX19_04047at 350.523 kb on + strand, within MPMX19_04047at 350.523 kb on + strand, within MPMX19_04047at 350.523 kb on + strand, within MPMX19_04047at 350.523 kb on + strand, within MPMX19_04047at 350.523 kb on + strand, within MPMX19_04047at 350.524 kb on - strand, within MPMX19_04047at 350.524 kb on - strand, within MPMX19_04047at 350.524 kb on - strand, within MPMX19_04047at 350.524 kb on - strand, within MPMX19_04047at 350.524 kb on - strand, within MPMX19_04047at 350.524 kb on - strand, within MPMX19_04047at 350.524 kb on - strand, within MPMX19_04047at 350.711 kb on + strandat 350.711 kb on + strandat 350.711 kb on + strandat 350.711 kb on + strandat 350.711 kb on + strandat 350.711 kb on + strandat 350.711 kb on + strandat 350.711 kb on + strandat 350.712 kb on - strandat 350.712 kb on - strandat 350.712 kb on - strandat 350.712 kb on - strandat 350.712 kb on - strandat 350.712 kb on - strandat 350.712 kb on - strandat 350.906 kb on + strand, within MPMX19_04048at 350.906 kb on + strand, within MPMX19_04048at 350.906 kb on + strand, within MPMX19_04048at 350.906 kb on + strand, within MPMX19_04048at 350.906 kb on + strand, within MPMX19_04048at 350.906 kb on + strand, within MPMX19_04048at 350.906 kb on + strand, within MPMX19_04048at 350.907 kb on - strand, within MPMX19_04048at 350.907 kb on - strand, within MPMX19_04048at 351.002 kb on + strand, within MPMX19_04048at 351.003 kb on - strand, within MPMX19_04048at 351.003 kb on - strand, within MPMX19_04048at 351.003 kb on - strand, within MPMX19_04048at 351.003 kb on - strand, within MPMX19_04048at 351.068 kb on + strand, within MPMX19_04048at 351.068 kb on + strand, within MPMX19_04048at 351.068 kb on + strand, within MPMX19_04048at 351.069 kb on - strand, within MPMX19_04048at 351.069 kb on - strand, within MPMX19_04048at 351.069 kb on - strand, within MPMX19_04048at 351.069 kb on - strand, within MPMX19_04048at 351.069 kb on - strand, within MPMX19_04048at 351.069 kb on - strand, within MPMX19_04048at 351.069 kb on - strand, within MPMX19_04048at 351.105 kb on - strand, within MPMX19_04048at 351.105 kb on - strand, within MPMX19_04048at 351.243 kb on + strandat 351.243 kb on + strandat 351.243 kb on + strandat 351.243 kb on + strandat 351.243 kb on + strandat 351.243 kb on + strandat 351.243 kb on + strandat 351.243 kb on + strandat 351.243 kb on + strandat 351.243 kb on + strandat 351.243 kb on + strandat 351.243 kb on + strandat 351.243 kb on + strandat 351.243 kb on + strandat 351.243 kb on + strandat 351.243 kb on + strandat 351.243 kb on + strandat 351.244 kb on - strandat 351.244 kb on - strandat 351.244 kb on - strandat 351.244 kb on - strandat 351.244 kb on - strandat 351.244 kb on - strandat 351.244 kb on - strandat 351.244 kb on - strandat 351.244 kb on - strandat 351.244 kb on - strandat 351.244 kb on - strandat 351.244 kb on - strandat 351.244 kb on - strandat 351.244 kb on - strandat 351.244 kb on - strandat 351.244 kb on - strandat 351.244 kb on - strandat 351.244 kb on - strandat 351.244 kb on - strandat 351.244 kb on - strandat 351.411 kb on + strand, within MPMX19_04049at 351.411 kb on + strand, within MPMX19_04049at 351.411 kb on + strand, within MPMX19_04049at 351.411 kb on + strand, within MPMX19_04049at 351.411 kb on + strand, within MPMX19_04049at 351.411 kb on + strand, within MPMX19_04049at 351.411 kb on + strand, within MPMX19_04049at 351.412 kb on - strand, within MPMX19_04049at 351.412 kb on - strand, within MPMX19_04049at 351.412 kb on - strand, within MPMX19_04049at 351.412 kb on - strand, within MPMX19_04049at 351.412 kb on - strand, within MPMX19_04049at 351.412 kb on - strand, within MPMX19_04049at 351.412 kb on - strand, within MPMX19_04049at 351.412 kb on - strand, within MPMX19_04049at 351.412 kb on - strand, within MPMX19_04049at 351.412 kb on - strand, within MPMX19_04049at 351.412 kb on - strand, within MPMX19_04049at 351.510 kb on + strand, within MPMX19_04049at 351.510 kb on + strand, within MPMX19_04049at 351.510 kb on + strand, within MPMX19_04049at 351.511 kb on - strand, within MPMX19_04049at 351.511 kb on - strand, within MPMX19_04049at 351.511 kb on - strand, within MPMX19_04049at 351.511 kb on - strand, within MPMX19_04049at 351.511 kb on - strand, within MPMX19_04049at 351.543 kb on + strand, within MPMX19_04049at 351.543 kb on + strand, within MPMX19_04049at 351.544 kb on - strand, within MPMX19_04049at 351.544 kb on - strand, within MPMX19_04049at 351.544 kb on - strand, within MPMX19_04049at 351.660 kb on + strand, within MPMX19_04049at 351.661 kb on - strand, within MPMX19_04049at 351.661 kb on - strand, within MPMX19_04049at 351.661 kb on - strand, within MPMX19_04049

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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349,017 + MPMX19_04046 0.38 -0.6
349,018 - MPMX19_04046 0.38 +1.7
349,018 - MPMX19_04046 0.38 +0.4
349,059 + MPMX19_04046 0.43 +0.9
349,059 + MPMX19_04046 0.43 -2.3
349,059 + MPMX19_04046 0.43 -1.8
349,059 + MPMX19_04046 0.43 -1.8
349,074 + MPMX19_04046 0.44 +0.3
349,074 + MPMX19_04046 0.44 -1.8
349,075 - MPMX19_04046 0.44 +0.0
349,075 - MPMX19_04046 0.44 +0.6
349,075 - MPMX19_04046 0.44 -0.4
349,075 - MPMX19_04046 0.44 -1.0
349,405 - MPMX19_04046 0.82 -1.0
349,405 - MPMX19_04046 0.82 -0.8
349,405 - MPMX19_04046 0.82 +0.3
349,405 - MPMX19_04046 0.82 +1.1
349,606 + -0.9
349,698 - -1.1
349,698 - +1.4
349,698 - +0.6
349,833 + MPMX19_04047 0.14 -1.6
349,833 + MPMX19_04047 0.14 -1.3
349,833 + MPMX19_04047 0.14 -2.0
349,833 + MPMX19_04047 0.14 +0.8
349,833 + MPMX19_04047 0.14 -0.0
349,833 + MPMX19_04047 0.14 -0.7
349,833 + MPMX19_04047 0.14 -2.4
349,833 + MPMX19_04047 0.14 +0.0
349,833 + MPMX19_04047 0.14 +0.7
349,833 + MPMX19_04047 0.14 -0.2
349,833 + MPMX19_04047 0.14 -0.4
349,833 + MPMX19_04047 0.14 +0.4
349,833 + MPMX19_04047 0.14 -0.4
349,834 - MPMX19_04047 0.14 +1.0
349,834 - MPMX19_04047 0.14 -0.5
349,834 - MPMX19_04047 0.14 -1.2
349,834 - MPMX19_04047 0.14 +1.4
349,834 - MPMX19_04047 0.14 -0.0
349,834 - MPMX19_04047 0.14 -1.0
349,834 - MPMX19_04047 0.14 -0.6
349,834 - MPMX19_04047 0.14 -1.2
349,867 - MPMX19_04047 0.17 +0.6
349,867 - MPMX19_04047 0.17 -1.0
349,867 - MPMX19_04047 0.17 -0.8
349,980 + MPMX19_04047 0.29 -2.2
350,502 + MPMX19_04047 0.82 -2.2
350,502 + MPMX19_04047 0.82 -2.2
350,502 + MPMX19_04047 0.82 -1.1
350,502 + MPMX19_04047 0.82 -2.0
350,502 + MPMX19_04047 0.82 -2.6
350,502 + MPMX19_04047 0.82 +0.5
350,502 + MPMX19_04047 0.82 -1.5
350,502 + MPMX19_04047 0.82 -0.0
350,502 + MPMX19_04047 0.82 -1.2
350,502 + MPMX19_04047 0.82 +1.4
350,502 + MPMX19_04047 0.82 -1.2
350,502 + MPMX19_04047 0.82 -2.6
350,502 + MPMX19_04047 0.82 -1.2
350,502 + MPMX19_04047 0.82 -0.4
350,502 + MPMX19_04047 0.82 -0.1
350,502 - MPMX19_04047 0.82 +1.1
350,503 - MPMX19_04047 0.82 -0.6
350,503 - MPMX19_04047 0.82 -0.7
350,503 - MPMX19_04047 0.82 -0.6
350,503 - MPMX19_04047 0.82 -1.0
350,503 - MPMX19_04047 0.82 +0.2
350,503 - MPMX19_04047 0.82 -0.5
350,503 - MPMX19_04047 0.82 -1.0
350,503 - MPMX19_04047 0.82 +1.1
350,503 - MPMX19_04047 0.82 -0.6
350,503 - MPMX19_04047 0.82 -1.6
350,503 - MPMX19_04047 0.82 -0.0
350,523 + MPMX19_04047 0.84 -0.5
350,523 + MPMX19_04047 0.84 -0.4
350,523 + MPMX19_04047 0.84 -0.6
350,523 + MPMX19_04047 0.84 +1.2
350,523 + MPMX19_04047 0.84 -0.6
350,523 + MPMX19_04047 0.84 -0.4
350,523 + MPMX19_04047 0.84 +0.2
350,523 + MPMX19_04047 0.84 +0.3
350,523 + MPMX19_04047 0.84 -1.0
350,523 + MPMX19_04047 0.84 +1.0
350,523 + MPMX19_04047 0.84 -0.2
350,524 - MPMX19_04047 0.84 +0.1
350,524 - MPMX19_04047 0.84 -1.0
350,524 - MPMX19_04047 0.84 -0.2
350,524 - MPMX19_04047 0.84 -0.1
350,524 - MPMX19_04047 0.84 +1.2
350,524 - MPMX19_04047 0.84 -1.2
350,524 - MPMX19_04047 0.84 -0.0
350,711 + +0.1
350,711 + +0.4
350,711 + +1.8
350,711 + +0.7
350,711 + -0.1
350,711 + -1.0
350,711 + -2.3
350,711 + -0.1
350,712 - +0.5
350,712 - -0.6
350,712 - +0.5
350,712 - +0.7
350,712 - +0.3
350,712 - +0.2
350,712 - -1.3
350,906 + MPMX19_04048 0.48 -0.2
350,906 + MPMX19_04048 0.48 +2.3
350,906 + MPMX19_04048 0.48 -0.7
350,906 + MPMX19_04048 0.48 -1.4
350,906 + MPMX19_04048 0.48 -0.8
350,906 + MPMX19_04048 0.48 -2.5
350,906 + MPMX19_04048 0.48 -1.8
350,907 - MPMX19_04048 0.49 -0.4
350,907 - MPMX19_04048 0.49 -1.2
351,002 + MPMX19_04048 0.67 -1.6
351,003 - MPMX19_04048 0.68 +0.5
351,003 - MPMX19_04048 0.68 +0.2
351,003 - MPMX19_04048 0.68 +0.0
351,003 - MPMX19_04048 0.68 -1.6
351,068 + MPMX19_04048 0.81 -0.3
351,068 + MPMX19_04048 0.81 -0.1
351,068 + MPMX19_04048 0.81 -1.6
351,069 - MPMX19_04048 0.81 -1.8
351,069 - MPMX19_04048 0.81 +0.1
351,069 - MPMX19_04048 0.81 -2.0
351,069 - MPMX19_04048 0.81 -1.2
351,069 - MPMX19_04048 0.81 -1.2
351,069 - MPMX19_04048 0.81 -1.4
351,069 - MPMX19_04048 0.81 -1.4
351,105 - MPMX19_04048 0.88 +0.3
351,105 - MPMX19_04048 0.88 +1.7
351,243 + +0.3
351,243 + +0.0
351,243 + -0.9
351,243 + -0.1
351,243 + -0.1
351,243 + -0.8
351,243 + +0.9
351,243 + -0.0
351,243 + -0.3
351,243 + +1.6
351,243 + -0.8
351,243 + +0.3
351,243 + -0.6
351,243 + -1.2
351,243 + -3.2
351,243 + +0.5
351,243 + +0.5
351,244 - +1.0
351,244 - +1.0
351,244 - +1.1
351,244 - -0.8
351,244 - +0.1
351,244 - -0.8
351,244 - -0.7
351,244 - -0.6
351,244 - -1.1
351,244 - -0.9
351,244 - -1.2
351,244 - -2.1
351,244 - -2.0
351,244 - -0.5
351,244 - +0.0
351,244 - -0.1
351,244 - -1.0
351,244 - +0.8
351,244 - +0.1
351,244 - -0.3
351,411 + MPMX19_04049 0.19 +1.4
351,411 + MPMX19_04049 0.19 -0.2
351,411 + MPMX19_04049 0.19 +0.1
351,411 + MPMX19_04049 0.19 -0.3
351,411 + MPMX19_04049 0.19 +0.3
351,411 + MPMX19_04049 0.19 -0.4
351,411 + MPMX19_04049 0.19 +0.1
351,412 - MPMX19_04049 0.19 +0.7
351,412 - MPMX19_04049 0.19 +0.5
351,412 - MPMX19_04049 0.19 -1.2
351,412 - MPMX19_04049 0.19 +0.4
351,412 - MPMX19_04049 0.19 +1.0
351,412 - MPMX19_04049 0.19 -0.0
351,412 - MPMX19_04049 0.19 -2.1
351,412 - MPMX19_04049 0.19 +0.2
351,412 - MPMX19_04049 0.19 -2.3
351,412 - MPMX19_04049 0.19 -1.5
351,412 - MPMX19_04049 0.19 -0.7
351,510 + MPMX19_04049 0.27 +0.6
351,510 + MPMX19_04049 0.27 +0.1
351,510 + MPMX19_04049 0.27 -1.8
351,511 - MPMX19_04049 0.27 -1.9
351,511 - MPMX19_04049 0.27 -0.4
351,511 - MPMX19_04049 0.27 -0.9
351,511 - MPMX19_04049 0.27 -0.4
351,511 - MPMX19_04049 0.27 -0.9
351,543 + MPMX19_04049 0.30 -1.6
351,543 + MPMX19_04049 0.30 -0.8
351,544 - MPMX19_04049 0.30 -0.3
351,544 - MPMX19_04049 0.30 +0.2
351,544 - MPMX19_04049 0.30 -0.8
351,660 + MPMX19_04049 0.40 -2.1
351,661 - MPMX19_04049 0.40 -0.0
351,661 - MPMX19_04049 0.40 +0.3
351,661 - MPMX19_04049 0.40 +0.4

Or see this region's nucleotide sequence