Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03790

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03788 and MPMX19_03789 are separated by 52 nucleotidesMPMX19_03789 and MPMX19_03790 are separated by 37 nucleotidesMPMX19_03790 and MPMX19_03791 are separated by 16 nucleotidesMPMX19_03791 and MPMX19_03792 overlap by 4 nucleotidesMPMX19_03792 and MPMX19_03793 are separated by 3 nucleotides MPMX19_03788: MPMX19_03788 - hypothetical protein, at 25,140 to 25,589 _03788 MPMX19_03789: MPMX19_03789 - hypothetical protein, at 25,642 to 26,169 _03789 MPMX19_03790: MPMX19_03790 - hypothetical protein, at 26,207 to 26,461 _03790 MPMX19_03791: MPMX19_03791 - hypothetical protein, at 26,478 to 26,822 _03791 MPMX19_03792: MPMX19_03792 - hypothetical protein, at 26,819 to 27,406 _03792 MPMX19_03793: MPMX19_03793 - hypothetical protein, at 27,410 to 27,910 _03793 Position (kb) 26 27Strain fitness (log2 ratio) -3 -2 -1 0 1at 25.385 kb on + strand, within MPMX19_03788at 25.385 kb on + strand, within MPMX19_03788at 25.385 kb on + strand, within MPMX19_03788at 25.385 kb on + strand, within MPMX19_03788at 25.386 kb on - strand, within MPMX19_03788at 25.386 kb on - strand, within MPMX19_03788at 25.386 kb on - strand, within MPMX19_03788at 25.421 kb on + strand, within MPMX19_03788at 25.461 kb on + strand, within MPMX19_03788at 25.461 kb on + strand, within MPMX19_03788at 25.461 kb on + strand, within MPMX19_03788at 25.461 kb on + strand, within MPMX19_03788at 25.462 kb on - strand, within MPMX19_03788at 25.462 kb on - strand, within MPMX19_03788at 25.462 kb on - strand, within MPMX19_03788at 25.462 kb on - strand, within MPMX19_03788at 25.462 kb on - strand, within MPMX19_03788at 25.462 kb on - strand, within MPMX19_03788at 25.462 kb on - strand, within MPMX19_03788at 25.462 kb on - strand, within MPMX19_03788at 25.587 kb on + strandat 25.587 kb on + strandat 25.587 kb on + strandat 25.588 kb on - strandat 25.588 kb on - strandat 25.598 kb on + strandat 25.598 kb on + strandat 25.599 kb on - strandat 25.599 kb on - strandat 25.599 kb on - strandat 25.599 kb on - strandat 25.687 kb on + strandat 25.687 kb on + strandat 25.687 kb on + strandat 25.687 kb on + strandat 25.688 kb on - strandat 25.688 kb on - strandat 25.688 kb on - strandat 25.688 kb on - strandat 25.688 kb on - strandat 25.688 kb on - strandat 25.688 kb on - strandat 25.858 kb on + strand, within MPMX19_03789at 25.858 kb on + strand, within MPMX19_03789at 25.858 kb on + strand, within MPMX19_03789at 25.858 kb on + strand, within MPMX19_03789at 25.859 kb on - strand, within MPMX19_03789at 25.859 kb on - strand, within MPMX19_03789at 25.859 kb on - strand, within MPMX19_03789at 25.993 kb on + strand, within MPMX19_03789at 25.993 kb on + strand, within MPMX19_03789at 26.023 kb on + strand, within MPMX19_03789at 26.023 kb on + strand, within MPMX19_03789at 26.023 kb on + strand, within MPMX19_03789at 26.023 kb on + strand, within MPMX19_03789at 26.023 kb on + strand, within MPMX19_03789at 26.023 kb on + strand, within MPMX19_03789at 26.024 kb on - strand, within MPMX19_03789at 26.024 kb on - strand, within MPMX19_03789at 26.024 kb on - strand, within MPMX19_03789at 26.024 kb on - strand, within MPMX19_03789at 26.024 kb on - strand, within MPMX19_03789at 26.024 kb on - strand, within MPMX19_03789at 26.024 kb on - strand, within MPMX19_03789at 26.024 kb on - strand, within MPMX19_03789at 26.024 kb on - strand, within MPMX19_03789at 26.024 kb on - strand, within MPMX19_03789at 26.029 kb on - strand, within MPMX19_03789at 26.092 kb on + strand, within MPMX19_03789at 26.092 kb on + strand, within MPMX19_03789at 26.093 kb on - strand, within MPMX19_03789at 26.093 kb on - strand, within MPMX19_03789at 26.093 kb on - strand, within MPMX19_03789at 26.093 kb on - strand, within MPMX19_03789at 26.093 kb on - strand, within MPMX19_03789at 26.093 kb on - strand, within MPMX19_03789at 26.093 kb on - strand, within MPMX19_03789at 26.093 kb on - strand, within MPMX19_03789at 26.276 kb on + strand, within MPMX19_03790at 26.276 kb on + strand, within MPMX19_03790at 26.276 kb on + strand, within MPMX19_03790at 26.277 kb on - strand, within MPMX19_03790at 26.277 kb on - strand, within MPMX19_03790at 26.277 kb on - strand, within MPMX19_03790at 27.452 kb on + strandat 27.452 kb on + strandat 27.452 kb on + strandat 27.452 kb on + strandat 27.452 kb on + strandat 27.452 kb on + strandat 27.452 kb on + strandat 27.452 kb on + strandat 27.452 kb on + strandat 27.453 kb on - strandat 27.453 kb on - strandat 27.453 kb on - strandat 27.453 kb on - strandat 27.453 kb on - strandat 27.453 kb on - strandat 27.453 kb on - strandat 27.453 kb on - strandat 27.453 kb on - strandat 27.458 kb on + strandat 27.458 kb on + strandat 27.458 kb on + strandat 27.458 kb on + strandat 27.458 kb on + strandat 27.458 kb on + strandat 27.458 kb on + strandat 27.458 kb on + strandat 27.459 kb on - strandat 27.459 kb on - strandat 27.459 kb on - strandat 27.459 kb on - strandat 27.459 kb on - strandat 27.459 kb on - strandat 27.459 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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25,385 + MPMX19_03788 0.54 -0.2
25,385 + MPMX19_03788 0.54 -1.2
25,385 + MPMX19_03788 0.54 +0.1
25,385 + MPMX19_03788 0.54 -2.1
25,386 - MPMX19_03788 0.55 -2.0
25,386 - MPMX19_03788 0.55 -0.5
25,386 - MPMX19_03788 0.55 -0.8
25,421 + MPMX19_03788 0.62 -2.2
25,461 + MPMX19_03788 0.71 -0.6
25,461 + MPMX19_03788 0.71 +1.0
25,461 + MPMX19_03788 0.71 -0.6
25,461 + MPMX19_03788 0.71 -2.1
25,462 - MPMX19_03788 0.72 +1.2
25,462 - MPMX19_03788 0.72 -1.0
25,462 - MPMX19_03788 0.72 -2.1
25,462 - MPMX19_03788 0.72 -0.8
25,462 - MPMX19_03788 0.72 +0.5
25,462 - MPMX19_03788 0.72 -0.3
25,462 - MPMX19_03788 0.72 -1.9
25,462 - MPMX19_03788 0.72 -0.5
25,587 + -0.7
25,587 + +0.0
25,587 + +1.0
25,588 - -0.1
25,588 - +0.0
25,598 + -0.3
25,598 + -1.4
25,599 - -1.3
25,599 - -0.3
25,599 - -0.3
25,599 - +0.6
25,687 + +0.7
25,687 + +0.4
25,687 + +0.1
25,687 + +1.4
25,688 - -0.3
25,688 - -0.7
25,688 - -2.3
25,688 - -0.1
25,688 - -1.4
25,688 - -0.9
25,688 - -0.8
25,858 + MPMX19_03789 0.41 +0.2
25,858 + MPMX19_03789 0.41 +0.5
25,858 + MPMX19_03789 0.41 -0.5
25,858 + MPMX19_03789 0.41 +0.5
25,859 - MPMX19_03789 0.41 +1.0
25,859 - MPMX19_03789 0.41 -0.1
25,859 - MPMX19_03789 0.41 -1.4
25,993 + MPMX19_03789 0.66 +0.4
25,993 + MPMX19_03789 0.66 -0.7
26,023 + MPMX19_03789 0.72 -0.1
26,023 + MPMX19_03789 0.72 -0.6
26,023 + MPMX19_03789 0.72 -0.4
26,023 + MPMX19_03789 0.72 +0.3
26,023 + MPMX19_03789 0.72 +1.4
26,023 + MPMX19_03789 0.72 -1.9
26,024 - MPMX19_03789 0.72 +0.4
26,024 - MPMX19_03789 0.72 +0.4
26,024 - MPMX19_03789 0.72 -0.6
26,024 - MPMX19_03789 0.72 -2.6
26,024 - MPMX19_03789 0.72 -0.3
26,024 - MPMX19_03789 0.72 -2.4
26,024 - MPMX19_03789 0.72 -0.1
26,024 - MPMX19_03789 0.72 +0.7
26,024 - MPMX19_03789 0.72 +0.3
26,024 - MPMX19_03789 0.72 -0.0
26,029 - MPMX19_03789 0.73 -1.6
26,092 + MPMX19_03789 0.85 -0.8
26,092 + MPMX19_03789 0.85 +1.2
26,093 - MPMX19_03789 0.85 -0.9
26,093 - MPMX19_03789 0.85 -0.0
26,093 - MPMX19_03789 0.85 -0.9
26,093 - MPMX19_03789 0.85 -0.1
26,093 - MPMX19_03789 0.85 -0.2
26,093 - MPMX19_03789 0.85 -1.6
26,093 - MPMX19_03789 0.85 +0.2
26,093 - MPMX19_03789 0.85 +0.4
26,276 + MPMX19_03790 0.27 -0.9
26,276 + MPMX19_03790 0.27 -0.4
26,276 + MPMX19_03790 0.27 -2.6
26,277 - MPMX19_03790 0.27 -0.9
26,277 - MPMX19_03790 0.27 +0.7
26,277 - MPMX19_03790 0.27 -0.9
27,452 + -2.1
27,452 + -0.4
27,452 + -0.9
27,452 + -0.6
27,452 + -0.2
27,452 + -1.9
27,452 + -1.3
27,452 + -1.3
27,452 + -0.9
27,453 - +0.3
27,453 - +0.2
27,453 - +0.8
27,453 - -0.9
27,453 - +0.7
27,453 - +0.2
27,453 - -3.2
27,453 - -2.9
27,453 - -0.4
27,458 + -0.0
27,458 + +0.0
27,458 + -0.3
27,458 + -0.6
27,458 + -1.3
27,458 + -0.8
27,458 + -1.1
27,458 + -0.3
27,459 - +0.4
27,459 - -2.9
27,459 - -0.7
27,459 - -0.1
27,459 - -0.3
27,459 - -0.6
27,459 - -2.2

Or see this region's nucleotide sequence