Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03318 and MPMX19_03319 are separated by 36 nucleotides MPMX19_03319 and MPMX19_03320 are separated by 28 nucleotides
MPMX19_03318: MPMX19_03318 - hypothetical protein, at 666,429 to 667,916
_03318
MPMX19_03319: MPMX19_03319 - hypothetical protein, at 667,953 to 669,902
_03319
MPMX19_03320: MPMX19_03320 - hypothetical protein, at 669,931 to 671,307
_03320
Position (kb)
667
668
669
670 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 667.111 kb on + strand, within MPMX19_03318 at 667.111 kb on + strand, within MPMX19_03318 at 667.111 kb on + strand, within MPMX19_03318 at 667.111 kb on + strand, within MPMX19_03318 at 667.111 kb on + strand, within MPMX19_03318 at 667.111 kb on + strand, within MPMX19_03318 at 667.111 kb on + strand, within MPMX19_03318 at 667.111 kb on + strand, within MPMX19_03318 at 667.111 kb on + strand, within MPMX19_03318 at 667.112 kb on - strand, within MPMX19_03318 at 667.112 kb on - strand, within MPMX19_03318 at 667.112 kb on - strand, within MPMX19_03318 at 667.112 kb on - strand, within MPMX19_03318 at 667.123 kb on + strand, within MPMX19_03318 at 667.123 kb on + strand, within MPMX19_03318 at 667.123 kb on + strand, within MPMX19_03318 at 667.353 kb on + strand, within MPMX19_03318 at 667.353 kb on + strand, within MPMX19_03318 at 667.353 kb on + strand, within MPMX19_03318 at 667.354 kb on - strand, within MPMX19_03318 at 667.354 kb on - strand, within MPMX19_03318 at 667.354 kb on - strand, within MPMX19_03318 at 667.354 kb on - strand, within MPMX19_03318 at 667.354 kb on - strand, within MPMX19_03318 at 667.354 kb on - strand, within MPMX19_03318 at 667.450 kb on + strand, within MPMX19_03318 at 667.450 kb on + strand, within MPMX19_03318 at 667.450 kb on + strand, within MPMX19_03318 at 667.450 kb on + strand, within MPMX19_03318 at 667.451 kb on - strand, within MPMX19_03318 at 667.451 kb on - strand, within MPMX19_03318 at 667.451 kb on - strand, within MPMX19_03318 at 667.451 kb on - strand, within MPMX19_03318 at 667.708 kb on + strand, within MPMX19_03318 at 667.708 kb on + strand, within MPMX19_03318 at 667.708 kb on + strand, within MPMX19_03318 at 667.708 kb on + strand, within MPMX19_03318 at 667.708 kb on + strand, within MPMX19_03318 at 667.708 kb on + strand, within MPMX19_03318 at 667.708 kb on + strand, within MPMX19_03318 at 667.708 kb on + strand, within MPMX19_03318 at 667.709 kb on - strand, within MPMX19_03318 at 667.709 kb on - strand, within MPMX19_03318 at 667.709 kb on - strand, within MPMX19_03318 at 667.709 kb on - strand, within MPMX19_03318 at 667.709 kb on - strand, within MPMX19_03318 at 667.709 kb on - strand, within MPMX19_03318 at 667.768 kb on + strand at 667.768 kb on + strand at 667.768 kb on + strand at 667.768 kb on + strand at 667.768 kb on + strand at 667.769 kb on - strand at 667.769 kb on - strand at 667.769 kb on - strand at 667.769 kb on - strand at 667.769 kb on - strand at 667.769 kb on - strand at 667.837 kb on + strand at 667.837 kb on + strand at 667.837 kb on + strand at 667.838 kb on - strand at 667.838 kb on - strand at 667.838 kb on - strand at 667.838 kb on - strand at 667.838 kb on - strand at 667.838 kb on - strand at 667.838 kb on - strand at 668.383 kb on + strand, within MPMX19_03319 at 668.383 kb on + strand, within MPMX19_03319 at 668.383 kb on + strand, within MPMX19_03319 at 668.383 kb on + strand, within MPMX19_03319 at 668.383 kb on + strand, within MPMX19_03319 at 668.383 kb on + strand, within MPMX19_03319 at 668.383 kb on + strand, within MPMX19_03319 at 668.383 kb on + strand, within MPMX19_03319 at 668.383 kb on + strand, within MPMX19_03319 at 668.383 kb on + strand, within MPMX19_03319 at 668.383 kb on + strand, within MPMX19_03319 at 668.383 kb on + strand, within MPMX19_03319 at 668.384 kb on - strand, within MPMX19_03319 at 668.384 kb on - strand, within MPMX19_03319 at 668.384 kb on - strand, within MPMX19_03319 at 668.384 kb on - strand, within MPMX19_03319 at 668.384 kb on - strand, within MPMX19_03319 at 668.384 kb on - strand, within MPMX19_03319 at 668.384 kb on - strand, within MPMX19_03319 at 668.384 kb on - strand, within MPMX19_03319 at 668.384 kb on - strand, within MPMX19_03319 at 668.384 kb on - strand, within MPMX19_03319 at 668.384 kb on - strand, within MPMX19_03319 at 668.911 kb on + strand, within MPMX19_03319 at 668.911 kb on + strand, within MPMX19_03319 at 668.911 kb on + strand, within MPMX19_03319 at 668.911 kb on + strand, within MPMX19_03319 at 668.911 kb on + strand, within MPMX19_03319 at 668.911 kb on + strand, within MPMX19_03319 at 668.912 kb on - strand, within MPMX19_03319 at 668.912 kb on - strand, within MPMX19_03319 at 668.912 kb on - strand, within MPMX19_03319 at 668.912 kb on - strand, within MPMX19_03319 at 668.912 kb on - strand, within MPMX19_03319 at 668.912 kb on - strand, within MPMX19_03319 at 668.912 kb on - strand, within MPMX19_03319 at 668.912 kb on - strand, within MPMX19_03319 at 668.970 kb on + strand, within MPMX19_03319 at 668.971 kb on - strand, within MPMX19_03319 at 668.971 kb on - strand, within MPMX19_03319 at 669.164 kb on + strand, within MPMX19_03319 at 669.164 kb on + strand, within MPMX19_03319 at 669.164 kb on + strand, within MPMX19_03319 at 669.165 kb on - strand, within MPMX19_03319 at 669.165 kb on - strand, within MPMX19_03319 at 669.165 kb on - strand, within MPMX19_03319 at 669.165 kb on - strand, within MPMX19_03319 at 669.165 kb on - strand, within MPMX19_03319 at 669.356 kb on - strand, within MPMX19_03319 at 669.356 kb on - strand, within MPMX19_03319 at 669.356 kb on - strand, within MPMX19_03319 at 669.356 kb on - strand, within MPMX19_03319 at 669.376 kb on + strand, within MPMX19_03319 at 669.377 kb on - strand, within MPMX19_03319 at 669.377 kb on - strand, within MPMX19_03319 at 669.452 kb on - strand, within MPMX19_03319 at 669.592 kb on + strand, within MPMX19_03319 at 669.592 kb on + strand, within MPMX19_03319 at 669.592 kb on + strand, within MPMX19_03319 at 669.592 kb on + strand, within MPMX19_03319 at 669.592 kb on + strand, within MPMX19_03319 at 669.592 kb on + strand, within MPMX19_03319 at 669.593 kb on - strand, within MPMX19_03319 at 669.593 kb on - strand, within MPMX19_03319 at 669.593 kb on - strand, within MPMX19_03319 at 669.593 kb on - strand, within MPMX19_03319 at 669.593 kb on - strand, within MPMX19_03319 at 669.604 kb on + strand, within MPMX19_03319 at 669.605 kb on - strand, within MPMX19_03319 at 669.605 kb on - strand, within MPMX19_03319 at 669.605 kb on - strand, within MPMX19_03319 at 669.605 kb on - strand, within MPMX19_03319 at 669.675 kb on - strand, within MPMX19_03319 at 669.675 kb on - strand, within MPMX19_03319 at 669.675 kb on - strand, within MPMX19_03319 at 669.675 kb on - strand, within MPMX19_03319 at 669.701 kb on + strand, within MPMX19_03319 at 669.721 kb on + strand at 669.722 kb on - strand at 669.722 kb on - strand at 669.722 kb on - strand at 669.772 kb on + strand at 669.772 kb on + strand at 669.772 kb on + strand at 669.772 kb on + strand at 669.772 kb on + strand at 669.772 kb on + strand at 669.773 kb on - strand at 669.773 kb on - strand at 669.773 kb on - strand at 669.773 kb on - strand at 670.460 kb on - strand, within MPMX19_03320 at 670.872 kb on + strand, within MPMX19_03320 at 670.872 kb on + strand, within MPMX19_03320 at 670.873 kb on - strand, within MPMX19_03320 at 670.873 kb on - strand, within MPMX19_03320 at 670.873 kb on - strand, within MPMX19_03320 at 670.873 kb on - strand, within MPMX19_03320
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 667,111 + MPMX19_03318 0.46 -0.5 667,111 + MPMX19_03318 0.46 -1.9 667,111 + MPMX19_03318 0.46 -0.4 667,111 + MPMX19_03318 0.46 -0.8 667,111 + MPMX19_03318 0.46 -0.0 667,111 + MPMX19_03318 0.46 +0.0 667,111 + MPMX19_03318 0.46 +1.9 667,111 + MPMX19_03318 0.46 +0.9 667,111 + MPMX19_03318 0.46 +0.1 667,112 - MPMX19_03318 0.46 +0.8 667,112 - MPMX19_03318 0.46 -1.0 667,112 - MPMX19_03318 0.46 -1.3 667,112 - MPMX19_03318 0.46 -1.6 667,123 + MPMX19_03318 0.47 -0.4 667,123 + MPMX19_03318 0.47 -1.7 667,123 + MPMX19_03318 0.47 -1.0 667,353 + MPMX19_03318 0.62 -0.9 667,353 + MPMX19_03318 0.62 -0.6 667,353 + MPMX19_03318 0.62 -1.0 667,354 - MPMX19_03318 0.62 -0.5 667,354 - MPMX19_03318 0.62 -1.3 667,354 - MPMX19_03318 0.62 +0.3 667,354 - MPMX19_03318 0.62 -0.8 667,354 - MPMX19_03318 0.62 -1.4 667,354 - MPMX19_03318 0.62 -1.1 667,450 + MPMX19_03318 0.69 -0.4 667,450 + MPMX19_03318 0.69 -0.4 667,450 + MPMX19_03318 0.69 -0.0 667,450 + MPMX19_03318 0.69 +0.3 667,451 - MPMX19_03318 0.69 +1.1 667,451 - MPMX19_03318 0.69 -1.0 667,451 - MPMX19_03318 0.69 -1.0 667,451 - MPMX19_03318 0.69 +0.3 667,708 + MPMX19_03318 0.86 -0.3 667,708 + MPMX19_03318 0.86 +1.1 667,708 + MPMX19_03318 0.86 -0.1 667,708 + MPMX19_03318 0.86 +0.3 667,708 + MPMX19_03318 0.86 +0.1 667,708 + MPMX19_03318 0.86 -0.0 667,708 + MPMX19_03318 0.86 -1.3 667,708 + MPMX19_03318 0.86 +1.0 667,709 - MPMX19_03318 0.86 +1.1 667,709 - MPMX19_03318 0.86 -0.0 667,709 - MPMX19_03318 0.86 -2.7 667,709 - MPMX19_03318 0.86 -1.9 667,709 - MPMX19_03318 0.86 +0.1 667,709 - MPMX19_03318 0.86 +0.7 667,768 + -0.7 667,768 + +0.6 667,768 + +2.3 667,768 + +0.5 667,768 + +1.0 667,769 - -1.3 667,769 - -0.7 667,769 - -1.5 667,769 - +0.1 667,769 - -0.4 667,769 - +0.2 667,837 + +1.0 667,837 + +0.5 667,837 + +0.2 667,838 - -0.2 667,838 - -0.8 667,838 - -0.0 667,838 - -0.1 667,838 - -0.2 667,838 - +0.7 667,838 - +0.6 668,383 + MPMX19_03319 0.22 -0.4 668,383 + MPMX19_03319 0.22 -0.0 668,383 + MPMX19_03319 0.22 +0.2 668,383 + MPMX19_03319 0.22 -0.7 668,383 + MPMX19_03319 0.22 +0.2 668,383 + MPMX19_03319 0.22 -0.6 668,383 + MPMX19_03319 0.22 -1.1 668,383 + MPMX19_03319 0.22 +1.1 668,383 + MPMX19_03319 0.22 -0.7 668,383 + MPMX19_03319 0.22 -1.1 668,383 + MPMX19_03319 0.22 +0.2 668,383 + MPMX19_03319 0.22 -1.8 668,384 - MPMX19_03319 0.22 -0.6 668,384 - MPMX19_03319 0.22 +1.1 668,384 - MPMX19_03319 0.22 -1.0 668,384 - MPMX19_03319 0.22 +0.1 668,384 - MPMX19_03319 0.22 -1.5 668,384 - MPMX19_03319 0.22 -1.2 668,384 - MPMX19_03319 0.22 -1.0 668,384 - MPMX19_03319 0.22 +0.7 668,384 - MPMX19_03319 0.22 +0.2 668,384 - MPMX19_03319 0.22 -1.0 668,384 - MPMX19_03319 0.22 +0.5 668,911 + MPMX19_03319 0.49 -0.2 668,911 + MPMX19_03319 0.49 -0.3 668,911 + MPMX19_03319 0.49 -0.6 668,911 + MPMX19_03319 0.49 +0.7 668,911 + MPMX19_03319 0.49 +2.2 668,911 + MPMX19_03319 0.49 -2.5 668,912 - MPMX19_03319 0.49 -0.2 668,912 - MPMX19_03319 0.49 -2.5 668,912 - MPMX19_03319 0.49 -0.3 668,912 - MPMX19_03319 0.49 +0.8 668,912 - MPMX19_03319 0.49 -0.1 668,912 - MPMX19_03319 0.49 -1.0 668,912 - MPMX19_03319 0.49 -0.0 668,912 - MPMX19_03319 0.49 +1.1 668,970 + MPMX19_03319 0.52 -0.5 668,971 - MPMX19_03319 0.52 +0.1 668,971 - MPMX19_03319 0.52 +1.3 669,164 + MPMX19_03319 0.62 -2.1 669,164 + MPMX19_03319 0.62 -0.6 669,164 + MPMX19_03319 0.62 -0.3 669,165 - MPMX19_03319 0.62 -0.8 669,165 - MPMX19_03319 0.62 -2.4 669,165 - MPMX19_03319 0.62 -0.1 669,165 - MPMX19_03319 0.62 -0.0 669,165 - MPMX19_03319 0.62 +0.9 669,356 - MPMX19_03319 0.72 +1.9 669,356 - MPMX19_03319 0.72 -0.0 669,356 - MPMX19_03319 0.72 +0.2 669,356 - MPMX19_03319 0.72 -2.7 669,376 + MPMX19_03319 0.73 -0.0 669,377 - MPMX19_03319 0.73 +0.1 669,377 - MPMX19_03319 0.73 -1.2 669,452 - MPMX19_03319 0.77 +0.1 669,592 + MPMX19_03319 0.84 -1.1 669,592 + MPMX19_03319 0.84 -1.0 669,592 + MPMX19_03319 0.84 +1.2 669,592 + MPMX19_03319 0.84 +0.1 669,592 + MPMX19_03319 0.84 -2.3 669,592 + MPMX19_03319 0.84 -1.2 669,593 - MPMX19_03319 0.84 -0.4 669,593 - MPMX19_03319 0.84 -1.9 669,593 - MPMX19_03319 0.84 -0.2 669,593 - MPMX19_03319 0.84 +0.1 669,593 - MPMX19_03319 0.84 -1.3 669,604 + MPMX19_03319 0.85 +0.3 669,605 - MPMX19_03319 0.85 +0.2 669,605 - MPMX19_03319 0.85 -2.0 669,605 - MPMX19_03319 0.85 -0.9 669,605 - MPMX19_03319 0.85 -0.9 669,675 - MPMX19_03319 0.88 -1.3 669,675 - MPMX19_03319 0.88 -2.1 669,675 - MPMX19_03319 0.88 -0.5 669,675 - MPMX19_03319 0.88 -0.1 669,701 + MPMX19_03319 0.90 -1.8 669,721 + -1.7 669,722 - +0.6 669,722 - -1.3 669,722 - -0.9 669,772 + +0.3 669,772 + -1.5 669,772 + -2.6 669,772 + +0.2 669,772 + +0.3 669,772 + +0.3 669,773 - -0.1 669,773 - +0.6 669,773 - -1.0 669,773 - -0.5 670,460 - MPMX19_03320 0.38 +0.3 670,872 + MPMX19_03320 0.68 +0.9 670,872 + MPMX19_03320 0.68 -0.2 670,873 - MPMX19_03320 0.68 +0.0 670,873 - MPMX19_03320 0.68 +0.6 670,873 - MPMX19_03320 0.68 -1.7 670,873 - MPMX19_03320 0.68 +0.2
Or see this region's nucleotide sequence