Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03220

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03219 and MPMX19_03220 are separated by 121 nucleotidesMPMX19_03220 and MPMX19_03221 are separated by 8 nucleotides MPMX19_03219: MPMX19_03219 - putative ABC transporter ATP-binding protein YheS, at 518,954 to 520,552 _03219 MPMX19_03220: MPMX19_03220 - hypothetical protein, at 520,674 to 521,312 _03220 MPMX19_03221: MPMX19_03221 - Adaptive-response sensory-kinase SasA, at 521,321 to 522,673 _03221 Position (kb) 520 521 522Strain fitness (log2 ratio) -3 -2 -1 0 1at 520.842 kb on + strand, within MPMX19_03220at 520.984 kb on - strand, within MPMX19_03220at 521.010 kb on + strand, within MPMX19_03220at 521.010 kb on + strand, within MPMX19_03220at 521.010 kb on + strand, within MPMX19_03220at 521.010 kb on + strand, within MPMX19_03220at 521.010 kb on + strand, within MPMX19_03220at 521.010 kb on + strand, within MPMX19_03220at 521.022 kb on + strand, within MPMX19_03220at 521.022 kb on + strand, within MPMX19_03220at 521.022 kb on + strand, within MPMX19_03220at 521.022 kb on + strand, within MPMX19_03220at 521.022 kb on + strand, within MPMX19_03220at 521.022 kb on + strand, within MPMX19_03220at 521.022 kb on + strand, within MPMX19_03220at 521.023 kb on - strand, within MPMX19_03220at 521.023 kb on - strand, within MPMX19_03220at 521.023 kb on - strand, within MPMX19_03220at 521.023 kb on - strand, within MPMX19_03220at 521.023 kb on - strand, within MPMX19_03220at 521.023 kb on - strand, within MPMX19_03220at 521.023 kb on - strand, within MPMX19_03220at 521.023 kb on - strand, within MPMX19_03220at 521.023 kb on - strand, within MPMX19_03220at 521.023 kb on - strand, within MPMX19_03220at 521.023 kb on - strand, within MPMX19_03220at 521.369 kb on + strandat 521.470 kb on - strand, within MPMX19_03221at 521.470 kb on - strand, within MPMX19_03221at 521.470 kb on - strand, within MPMX19_03221at 521.470 kb on - strand, within MPMX19_03221at 521.704 kb on - strand, within MPMX19_03221at 521.704 kb on - strand, within MPMX19_03221at 521.704 kb on - strand, within MPMX19_03221at 521.784 kb on + strand, within MPMX19_03221at 521.784 kb on + strand, within MPMX19_03221at 521.784 kb on + strand, within MPMX19_03221at 521.784 kb on + strand, within MPMX19_03221at 521.784 kb on + strand, within MPMX19_03221at 521.784 kb on + strand, within MPMX19_03221at 521.784 kb on + strand, within MPMX19_03221at 521.785 kb on - strand, within MPMX19_03221at 521.785 kb on - strand, within MPMX19_03221at 521.785 kb on - strand, within MPMX19_03221at 521.785 kb on - strand, within MPMX19_03221at 521.785 kb on - strand, within MPMX19_03221at 521.785 kb on - strand, within MPMX19_03221at 521.949 kb on + strand, within MPMX19_03221at 521.949 kb on + strand, within MPMX19_03221at 521.949 kb on + strand, within MPMX19_03221at 521.949 kb on + strand, within MPMX19_03221at 521.950 kb on - strand, within MPMX19_03221at 521.950 kb on - strand, within MPMX19_03221

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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520,842 + MPMX19_03220 0.26 -0.6
520,984 - MPMX19_03220 0.49 +0.0
521,010 + MPMX19_03220 0.53 +0.7
521,010 + MPMX19_03220 0.53 +0.8
521,010 + MPMX19_03220 0.53 +0.2
521,010 + MPMX19_03220 0.53 +0.1
521,010 + MPMX19_03220 0.53 +0.1
521,010 + MPMX19_03220 0.53 -0.2
521,022 + MPMX19_03220 0.54 +0.2
521,022 + MPMX19_03220 0.54 +0.6
521,022 + MPMX19_03220 0.54 +1.0
521,022 + MPMX19_03220 0.54 +0.6
521,022 + MPMX19_03220 0.54 +0.8
521,022 + MPMX19_03220 0.54 -0.5
521,022 + MPMX19_03220 0.54 -0.5
521,023 - MPMX19_03220 0.55 -0.4
521,023 - MPMX19_03220 0.55 +0.9
521,023 - MPMX19_03220 0.55 +0.3
521,023 - MPMX19_03220 0.55 -1.4
521,023 - MPMX19_03220 0.55 -0.6
521,023 - MPMX19_03220 0.55 -1.3
521,023 - MPMX19_03220 0.55 -0.0
521,023 - MPMX19_03220 0.55 -3.1
521,023 - MPMX19_03220 0.55 +0.6
521,023 - MPMX19_03220 0.55 +0.4
521,023 - MPMX19_03220 0.55 -0.7
521,369 + +0.4
521,470 - MPMX19_03221 0.11 -2.5
521,470 - MPMX19_03221 0.11 +0.1
521,470 - MPMX19_03221 0.11 -1.3
521,470 - MPMX19_03221 0.11 +0.3
521,704 - MPMX19_03221 0.28 -1.7
521,704 - MPMX19_03221 0.28 +1.3
521,704 - MPMX19_03221 0.28 -0.7
521,784 + MPMX19_03221 0.34 -2.6
521,784 + MPMX19_03221 0.34 -2.0
521,784 + MPMX19_03221 0.34 -0.8
521,784 + MPMX19_03221 0.34 +1.0
521,784 + MPMX19_03221 0.34 -0.4
521,784 + MPMX19_03221 0.34 +1.3
521,784 + MPMX19_03221 0.34 +0.3
521,785 - MPMX19_03221 0.34 -0.9
521,785 - MPMX19_03221 0.34 +0.7
521,785 - MPMX19_03221 0.34 +1.3
521,785 - MPMX19_03221 0.34 -2.0
521,785 - MPMX19_03221 0.34 -0.1
521,785 - MPMX19_03221 0.34 +1.0
521,949 + MPMX19_03221 0.46 +0.3
521,949 + MPMX19_03221 0.46 +0.7
521,949 + MPMX19_03221 0.46 -0.6
521,949 + MPMX19_03221 0.46 +0.5
521,950 - MPMX19_03221 0.46 -1.7
521,950 - MPMX19_03221 0.46 -0.9

Or see this region's nucleotide sequence