Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02559 and MPMX19_02560 overlap by 4 nucleotides MPMX19_02560 and MPMX19_02561 are separated by 10 nucleotides MPMX19_02561 and MPMX19_02562 overlap by 8 nucleotides MPMX19_02562 and MPMX19_02563 are separated by 49 nucleotides
MPMX19_02559: MPMX19_02559 - 7-methyl-GTP pyrophosphatase, at 2,675,570 to 2,676,175
_02559
MPMX19_02560: MPMX19_02560 - Shikimate dehydrogenase (NADP(+)), at 2,676,172 to 2,677,044
_02560
MPMX19_02561: MPMX19_02561 - Dephospho-CoA kinase, at 2,677,055 to 2,677,714
_02561
MPMX19_02562: MPMX19_02562 - DNA polymerase III subunit epsilon, at 2,677,707 to 2,678,390
_02562
MPMX19_02563: MPMX19_02563 - 2-haloacrylate reductase, at 2,678,440 to 2,679,414
_02563
Position (kb)
2677
2678 Strain fitness (log2 ratio)
-2
-1
0
1 at 2677.685 kb on + strand at 2677.685 kb on + strand at 2677.686 kb on - strand at 2678.441 kb on + strand at 2678.441 kb on + strand at 2678.441 kb on + strand at 2678.441 kb on + strand at 2678.441 kb on + strand at 2678.442 kb on - strand at 2678.442 kb on - strand at 2678.442 kb on - strand at 2678.442 kb on - strand at 2678.612 kb on + strand, within MPMX19_02563 at 2678.612 kb on + strand, within MPMX19_02563 at 2678.612 kb on + strand, within MPMX19_02563 at 2678.612 kb on + strand, within MPMX19_02563 at 2678.612 kb on + strand, within MPMX19_02563 at 2678.612 kb on + strand, within MPMX19_02563 at 2678.612 kb on + strand, within MPMX19_02563 at 2678.612 kb on + strand, within MPMX19_02563 at 2678.612 kb on + strand, within MPMX19_02563 at 2678.612 kb on + strand, within MPMX19_02563 at 2678.612 kb on + strand, within MPMX19_02563 at 2678.612 kb on + strand, within MPMX19_02563 at 2678.612 kb on + strand, within MPMX19_02563 at 2678.612 kb on + strand, within MPMX19_02563 at 2678.612 kb on + strand, within MPMX19_02563 at 2678.613 kb on - strand, within MPMX19_02563 at 2678.613 kb on - strand, within MPMX19_02563 at 2678.613 kb on - strand, within MPMX19_02563 at 2678.613 kb on - strand, within MPMX19_02563 at 2678.613 kb on - strand, within MPMX19_02563 at 2678.613 kb on - strand, within MPMX19_02563 at 2678.613 kb on - strand, within MPMX19_02563 at 2678.613 kb on - strand, within MPMX19_02563 at 2678.613 kb on - strand, within MPMX19_02563 at 2678.613 kb on - strand, within MPMX19_02563 at 2678.613 kb on - strand, within MPMX19_02563 at 2678.639 kb on + strand, within MPMX19_02563 at 2678.639 kb on + strand, within MPMX19_02563 at 2678.639 kb on + strand, within MPMX19_02563 at 2678.639 kb on + strand, within MPMX19_02563 at 2678.639 kb on + strand, within MPMX19_02563 at 2678.639 kb on + strand, within MPMX19_02563 at 2678.639 kb on + strand, within MPMX19_02563 at 2678.639 kb on + strand, within MPMX19_02563 at 2678.639 kb on + strand, within MPMX19_02563 at 2678.639 kb on + strand, within MPMX19_02563 at 2678.639 kb on + strand, within MPMX19_02563 at 2678.639 kb on + strand, within MPMX19_02563 at 2678.639 kb on + strand, within MPMX19_02563 at 2678.639 kb on + strand, within MPMX19_02563 at 2678.639 kb on + strand, within MPMX19_02563 at 2678.639 kb on + strand, within MPMX19_02563 at 2678.639 kb on + strand, within MPMX19_02563 at 2678.640 kb on - strand, within MPMX19_02563 at 2678.640 kb on - strand, within MPMX19_02563 at 2678.640 kb on - strand, within MPMX19_02563 at 2678.640 kb on - strand, within MPMX19_02563 at 2678.640 kb on - strand, within MPMX19_02563 at 2678.640 kb on - strand, within MPMX19_02563 at 2678.640 kb on - strand, within MPMX19_02563 at 2678.640 kb on - strand, within MPMX19_02563 at 2678.640 kb on - strand, within MPMX19_02563 at 2678.640 kb on - strand, within MPMX19_02563 at 2678.640 kb on - strand, within MPMX19_02563 at 2678.640 kb on - strand, within MPMX19_02563 at 2678.640 kb on - strand, within MPMX19_02563 at 2678.640 kb on - strand, within MPMX19_02563
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 2,677,685 + +0.8 2,677,685 + +0.7 2,677,686 - -0.2 2,678,441 + -0.9 2,678,441 + +0.5 2,678,441 + -0.3 2,678,441 + +0.3 2,678,441 + +1.5 2,678,442 - -0.9 2,678,442 - +0.5 2,678,442 - -0.0 2,678,442 - -0.9 2,678,612 + MPMX19_02563 0.18 +0.2 2,678,612 + MPMX19_02563 0.18 -0.6 2,678,612 + MPMX19_02563 0.18 -0.5 2,678,612 + MPMX19_02563 0.18 -1.5 2,678,612 + MPMX19_02563 0.18 +0.8 2,678,612 + MPMX19_02563 0.18 -0.6 2,678,612 + MPMX19_02563 0.18 +0.0 2,678,612 + MPMX19_02563 0.18 -2.5 2,678,612 + MPMX19_02563 0.18 -1.3 2,678,612 + MPMX19_02563 0.18 +0.1 2,678,612 + MPMX19_02563 0.18 -0.6 2,678,612 + MPMX19_02563 0.18 -0.3 2,678,612 + MPMX19_02563 0.18 +1.3 2,678,612 + MPMX19_02563 0.18 +0.1 2,678,612 + MPMX19_02563 0.18 +0.6 2,678,613 - MPMX19_02563 0.18 -1.8 2,678,613 - MPMX19_02563 0.18 +0.5 2,678,613 - MPMX19_02563 0.18 -2.2 2,678,613 - MPMX19_02563 0.18 -0.8 2,678,613 - MPMX19_02563 0.18 +0.1 2,678,613 - MPMX19_02563 0.18 +0.9 2,678,613 - MPMX19_02563 0.18 -0.8 2,678,613 - MPMX19_02563 0.18 +0.2 2,678,613 - MPMX19_02563 0.18 -1.0 2,678,613 - MPMX19_02563 0.18 -1.0 2,678,613 - MPMX19_02563 0.18 +0.7 2,678,639 + MPMX19_02563 0.20 -2.1 2,678,639 + MPMX19_02563 0.20 -1.9 2,678,639 + MPMX19_02563 0.20 -1.5 2,678,639 + MPMX19_02563 0.20 +0.2 2,678,639 + MPMX19_02563 0.20 -0.9 2,678,639 + MPMX19_02563 0.20 -0.2 2,678,639 + MPMX19_02563 0.20 +0.2 2,678,639 + MPMX19_02563 0.20 +0.7 2,678,639 + MPMX19_02563 0.20 -0.5 2,678,639 + MPMX19_02563 0.20 -0.9 2,678,639 + MPMX19_02563 0.20 +0.5 2,678,639 + MPMX19_02563 0.20 -2.4 2,678,639 + MPMX19_02563 0.20 +0.2 2,678,639 + MPMX19_02563 0.20 +0.8 2,678,639 + MPMX19_02563 0.20 -1.2 2,678,639 + MPMX19_02563 0.20 -0.3 2,678,639 + MPMX19_02563 0.20 +1.2 2,678,640 - MPMX19_02563 0.21 -2.3 2,678,640 - MPMX19_02563 0.21 -0.2 2,678,640 - MPMX19_02563 0.21 +0.5 2,678,640 - MPMX19_02563 0.21 -0.9 2,678,640 - MPMX19_02563 0.21 +0.1 2,678,640 - MPMX19_02563 0.21 +0.8 2,678,640 - MPMX19_02563 0.21 -1.7 2,678,640 - MPMX19_02563 0.21 +0.2 2,678,640 - MPMX19_02563 0.21 +0.2 2,678,640 - MPMX19_02563 0.21 -1.9 2,678,640 - MPMX19_02563 0.21 -0.1 2,678,640 - MPMX19_02563 0.21 -0.1 2,678,640 - MPMX19_02563 0.21 +0.6 2,678,640 - MPMX19_02563 0.21 -0.1
Or see this region's nucleotide sequence