Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02561

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02559 and MPMX19_02560 overlap by 4 nucleotidesMPMX19_02560 and MPMX19_02561 are separated by 10 nucleotidesMPMX19_02561 and MPMX19_02562 overlap by 8 nucleotidesMPMX19_02562 and MPMX19_02563 are separated by 49 nucleotides MPMX19_02559: MPMX19_02559 - 7-methyl-GTP pyrophosphatase, at 2,675,570 to 2,676,175 _02559 MPMX19_02560: MPMX19_02560 - Shikimate dehydrogenase (NADP(+)), at 2,676,172 to 2,677,044 _02560 MPMX19_02561: MPMX19_02561 - Dephospho-CoA kinase, at 2,677,055 to 2,677,714 _02561 MPMX19_02562: MPMX19_02562 - DNA polymerase III subunit epsilon, at 2,677,707 to 2,678,390 _02562 MPMX19_02563: MPMX19_02563 - 2-haloacrylate reductase, at 2,678,440 to 2,679,414 _02563 Position (kb) 2677 2678Strain fitness (log2 ratio) -2 -1 0 1at 2677.685 kb on + strandat 2677.685 kb on + strandat 2677.686 kb on - strandat 2678.441 kb on + strandat 2678.441 kb on + strandat 2678.441 kb on + strandat 2678.441 kb on + strandat 2678.441 kb on + strandat 2678.442 kb on - strandat 2678.442 kb on - strandat 2678.442 kb on - strandat 2678.442 kb on - strandat 2678.612 kb on + strand, within MPMX19_02563at 2678.612 kb on + strand, within MPMX19_02563at 2678.612 kb on + strand, within MPMX19_02563at 2678.612 kb on + strand, within MPMX19_02563at 2678.612 kb on + strand, within MPMX19_02563at 2678.612 kb on + strand, within MPMX19_02563at 2678.612 kb on + strand, within MPMX19_02563at 2678.612 kb on + strand, within MPMX19_02563at 2678.612 kb on + strand, within MPMX19_02563at 2678.612 kb on + strand, within MPMX19_02563at 2678.612 kb on + strand, within MPMX19_02563at 2678.612 kb on + strand, within MPMX19_02563at 2678.612 kb on + strand, within MPMX19_02563at 2678.612 kb on + strand, within MPMX19_02563at 2678.612 kb on + strand, within MPMX19_02563at 2678.613 kb on - strand, within MPMX19_02563at 2678.613 kb on - strand, within MPMX19_02563at 2678.613 kb on - strand, within MPMX19_02563at 2678.613 kb on - strand, within MPMX19_02563at 2678.613 kb on - strand, within MPMX19_02563at 2678.613 kb on - strand, within MPMX19_02563at 2678.613 kb on - strand, within MPMX19_02563at 2678.613 kb on - strand, within MPMX19_02563at 2678.613 kb on - strand, within MPMX19_02563at 2678.613 kb on - strand, within MPMX19_02563at 2678.613 kb on - strand, within MPMX19_02563at 2678.639 kb on + strand, within MPMX19_02563at 2678.639 kb on + strand, within MPMX19_02563at 2678.639 kb on + strand, within MPMX19_02563at 2678.639 kb on + strand, within MPMX19_02563at 2678.639 kb on + strand, within MPMX19_02563at 2678.639 kb on + strand, within MPMX19_02563at 2678.639 kb on + strand, within MPMX19_02563at 2678.639 kb on + strand, within MPMX19_02563at 2678.639 kb on + strand, within MPMX19_02563at 2678.639 kb on + strand, within MPMX19_02563at 2678.639 kb on + strand, within MPMX19_02563at 2678.639 kb on + strand, within MPMX19_02563at 2678.639 kb on + strand, within MPMX19_02563at 2678.639 kb on + strand, within MPMX19_02563at 2678.639 kb on + strand, within MPMX19_02563at 2678.639 kb on + strand, within MPMX19_02563at 2678.639 kb on + strand, within MPMX19_02563at 2678.640 kb on - strand, within MPMX19_02563at 2678.640 kb on - strand, within MPMX19_02563at 2678.640 kb on - strand, within MPMX19_02563at 2678.640 kb on - strand, within MPMX19_02563at 2678.640 kb on - strand, within MPMX19_02563at 2678.640 kb on - strand, within MPMX19_02563at 2678.640 kb on - strand, within MPMX19_02563at 2678.640 kb on - strand, within MPMX19_02563at 2678.640 kb on - strand, within MPMX19_02563at 2678.640 kb on - strand, within MPMX19_02563at 2678.640 kb on - strand, within MPMX19_02563at 2678.640 kb on - strand, within MPMX19_02563at 2678.640 kb on - strand, within MPMX19_02563at 2678.640 kb on - strand, within MPMX19_02563

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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2,677,685 + +0.8
2,677,685 + +0.7
2,677,686 - -0.2
2,678,441 + -0.9
2,678,441 + +0.5
2,678,441 + -0.3
2,678,441 + +0.3
2,678,441 + +1.5
2,678,442 - -0.9
2,678,442 - +0.5
2,678,442 - -0.0
2,678,442 - -0.9
2,678,612 + MPMX19_02563 0.18 +0.2
2,678,612 + MPMX19_02563 0.18 -0.6
2,678,612 + MPMX19_02563 0.18 -0.5
2,678,612 + MPMX19_02563 0.18 -1.5
2,678,612 + MPMX19_02563 0.18 +0.8
2,678,612 + MPMX19_02563 0.18 -0.6
2,678,612 + MPMX19_02563 0.18 +0.0
2,678,612 + MPMX19_02563 0.18 -2.5
2,678,612 + MPMX19_02563 0.18 -1.3
2,678,612 + MPMX19_02563 0.18 +0.1
2,678,612 + MPMX19_02563 0.18 -0.6
2,678,612 + MPMX19_02563 0.18 -0.3
2,678,612 + MPMX19_02563 0.18 +1.3
2,678,612 + MPMX19_02563 0.18 +0.1
2,678,612 + MPMX19_02563 0.18 +0.6
2,678,613 - MPMX19_02563 0.18 -1.8
2,678,613 - MPMX19_02563 0.18 +0.5
2,678,613 - MPMX19_02563 0.18 -2.2
2,678,613 - MPMX19_02563 0.18 -0.8
2,678,613 - MPMX19_02563 0.18 +0.1
2,678,613 - MPMX19_02563 0.18 +0.9
2,678,613 - MPMX19_02563 0.18 -0.8
2,678,613 - MPMX19_02563 0.18 +0.2
2,678,613 - MPMX19_02563 0.18 -1.0
2,678,613 - MPMX19_02563 0.18 -1.0
2,678,613 - MPMX19_02563 0.18 +0.7
2,678,639 + MPMX19_02563 0.20 -2.1
2,678,639 + MPMX19_02563 0.20 -1.9
2,678,639 + MPMX19_02563 0.20 -1.5
2,678,639 + MPMX19_02563 0.20 +0.2
2,678,639 + MPMX19_02563 0.20 -0.9
2,678,639 + MPMX19_02563 0.20 -0.2
2,678,639 + MPMX19_02563 0.20 +0.2
2,678,639 + MPMX19_02563 0.20 +0.7
2,678,639 + MPMX19_02563 0.20 -0.5
2,678,639 + MPMX19_02563 0.20 -0.9
2,678,639 + MPMX19_02563 0.20 +0.5
2,678,639 + MPMX19_02563 0.20 -2.4
2,678,639 + MPMX19_02563 0.20 +0.2
2,678,639 + MPMX19_02563 0.20 +0.8
2,678,639 + MPMX19_02563 0.20 -1.2
2,678,639 + MPMX19_02563 0.20 -0.3
2,678,639 + MPMX19_02563 0.20 +1.2
2,678,640 - MPMX19_02563 0.21 -2.3
2,678,640 - MPMX19_02563 0.21 -0.2
2,678,640 - MPMX19_02563 0.21 +0.5
2,678,640 - MPMX19_02563 0.21 -0.9
2,678,640 - MPMX19_02563 0.21 +0.1
2,678,640 - MPMX19_02563 0.21 +0.8
2,678,640 - MPMX19_02563 0.21 -1.7
2,678,640 - MPMX19_02563 0.21 +0.2
2,678,640 - MPMX19_02563 0.21 +0.2
2,678,640 - MPMX19_02563 0.21 -1.9
2,678,640 - MPMX19_02563 0.21 -0.1
2,678,640 - MPMX19_02563 0.21 -0.1
2,678,640 - MPMX19_02563 0.21 +0.6
2,678,640 - MPMX19_02563 0.21 -0.1

Or see this region's nucleotide sequence