Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01656

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01655 and MPMX19_01656 are separated by 189 nucleotidesMPMX19_01656 and MPMX19_01657 are separated by 62 nucleotidesMPMX19_01657 and MPMX19_01658 are separated by 110 nucleotides MPMX19_01655: MPMX19_01655 - Cysteine desulfurase NifS, at 1,737,537 to 1,738,688 _01655 MPMX19_01656: MPMX19_01656 - Co-chaperone protein HscB, at 1,738,878 to 1,739,573 _01656 MPMX19_01657: MPMX19_01657 - Ferredoxin-6, at 1,739,636 to 1,739,965 _01657 MPMX19_01658: MPMX19_01658 - tRNA-specific 2-thiouridylase MnmA, at 1,740,076 to 1,741,263 _01658 Position (kb) 1738 1739 1740Strain fitness (log2 ratio) -3 -2 -1 0 1at 1738.779 kb on + strandat 1738.779 kb on + strandat 1738.779 kb on + strandat 1738.779 kb on + strandat 1738.839 kb on + strandat 1739.089 kb on + strand, within MPMX19_01656at 1739.089 kb on + strand, within MPMX19_01656at 1739.089 kb on + strand, within MPMX19_01656at 1739.089 kb on + strand, within MPMX19_01656at 1739.089 kb on + strand, within MPMX19_01656at 1739.089 kb on + strand, within MPMX19_01656at 1739.089 kb on + strand, within MPMX19_01656at 1739.089 kb on + strand, within MPMX19_01656at 1739.089 kb on + strand, within MPMX19_01656at 1739.089 kb on + strand, within MPMX19_01656at 1739.089 kb on + strand, within MPMX19_01656at 1739.089 kb on + strand, within MPMX19_01656at 1739.089 kb on + strand, within MPMX19_01656at 1739.089 kb on + strand, within MPMX19_01656at 1739.089 kb on + strand, within MPMX19_01656at 1739.089 kb on + strand, within MPMX19_01656at 1739.217 kb on + strand, within MPMX19_01656at 1739.217 kb on + strand, within MPMX19_01656at 1739.217 kb on + strand, within MPMX19_01656at 1739.217 kb on + strand, within MPMX19_01656at 1739.217 kb on + strand, within MPMX19_01656at 1739.217 kb on + strand, within MPMX19_01656at 1739.217 kb on + strand, within MPMX19_01656at 1739.217 kb on + strand, within MPMX19_01656at 1739.217 kb on + strand, within MPMX19_01656at 1739.217 kb on + strand, within MPMX19_01656at 1739.412 kb on + strand, within MPMX19_01656at 1739.412 kb on + strand, within MPMX19_01656at 1739.412 kb on + strand, within MPMX19_01656at 1739.412 kb on + strand, within MPMX19_01656at 1739.412 kb on + strand, within MPMX19_01656at 1739.412 kb on + strand, within MPMX19_01656at 1739.412 kb on + strand, within MPMX19_01656at 1739.412 kb on + strand, within MPMX19_01656at 1739.412 kb on + strand, within MPMX19_01656at 1739.412 kb on + strand, within MPMX19_01656at 1739.587 kb on + strandat 1739.618 kb on + strandat 1739.618 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.063 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.065 kb on + strandat 1740.067 kb on + strandat 1740.067 kb on + strandat 1740.067 kb on + strandat 1740.067 kb on + strandat 1740.067 kb on + strandat 1740.067 kb on + strandat 1740.067 kb on + strandat 1740.067 kb on + strandat 1740.067 kb on + strandat 1740.067 kb on + strandat 1740.067 kb on + strandat 1740.067 kb on + strandat 1740.067 kb on + strandat 1740.067 kb on + strandat 1740.067 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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1,738,779 + +0.6
1,738,779 + -0.2
1,738,779 + -0.8
1,738,779 + -0.2
1,738,839 + -0.3
1,739,089 + MPMX19_01656 0.30 +0.0
1,739,089 + MPMX19_01656 0.30 +0.5
1,739,089 + MPMX19_01656 0.30 -0.0
1,739,089 + MPMX19_01656 0.30 +0.0
1,739,089 + MPMX19_01656 0.30 +0.9
1,739,089 + MPMX19_01656 0.30 -1.8
1,739,089 + MPMX19_01656 0.30 -0.0
1,739,089 + MPMX19_01656 0.30 +0.9
1,739,089 + MPMX19_01656 0.30 -0.7
1,739,089 + MPMX19_01656 0.30 +0.7
1,739,089 + MPMX19_01656 0.30 -0.2
1,739,089 + MPMX19_01656 0.30 +0.8
1,739,089 + MPMX19_01656 0.30 +0.1
1,739,089 + MPMX19_01656 0.30 +0.2
1,739,089 + MPMX19_01656 0.30 -0.9
1,739,089 + MPMX19_01656 0.30 -0.9
1,739,217 + MPMX19_01656 0.49 +1.7
1,739,217 + MPMX19_01656 0.49 +0.2
1,739,217 + MPMX19_01656 0.49 -0.3
1,739,217 + MPMX19_01656 0.49 -1.5
1,739,217 + MPMX19_01656 0.49 +0.1
1,739,217 + MPMX19_01656 0.49 -0.3
1,739,217 + MPMX19_01656 0.49 +0.2
1,739,217 + MPMX19_01656 0.49 -0.0
1,739,217 + MPMX19_01656 0.49 -0.5
1,739,217 + MPMX19_01656 0.49 +1.0
1,739,412 + MPMX19_01656 0.77 -0.3
1,739,412 + MPMX19_01656 0.77 +0.1
1,739,412 + MPMX19_01656 0.77 -0.1
1,739,412 + MPMX19_01656 0.77 +0.6
1,739,412 + MPMX19_01656 0.77 +0.4
1,739,412 + MPMX19_01656 0.77 -0.3
1,739,412 + MPMX19_01656 0.77 +0.1
1,739,412 + MPMX19_01656 0.77 +0.3
1,739,412 + MPMX19_01656 0.77 +0.5
1,739,412 + MPMX19_01656 0.77 -0.4
1,739,587 + -0.2
1,739,618 + +0.3
1,739,618 + -0.8
1,740,063 + -0.5
1,740,063 + +1.2
1,740,063 + +0.7
1,740,063 + -1.3
1,740,063 + +0.6
1,740,063 + +0.2
1,740,063 + -1.7
1,740,063 + -0.0
1,740,063 + -0.6
1,740,063 + -1.4
1,740,063 + -3.7
1,740,063 + +0.3
1,740,063 + +0.1
1,740,063 + +0.2
1,740,063 + -0.0
1,740,063 + -0.7
1,740,063 + -0.2
1,740,063 + +0.8
1,740,063 + +0.1
1,740,063 + +0.6
1,740,063 + +1.3
1,740,063 + -0.3
1,740,063 + -0.2
1,740,063 + +0.3
1,740,063 + -2.6
1,740,063 + -0.1
1,740,063 + +0.5
1,740,063 + -0.6
1,740,063 + -0.1
1,740,063 + -0.7
1,740,063 + +1.7
1,740,063 + -1.7
1,740,063 + +1.2
1,740,065 + +0.8
1,740,065 + +0.1
1,740,065 + -1.3
1,740,065 + -0.7
1,740,065 + -0.4
1,740,065 + -1.3
1,740,065 + +0.2
1,740,065 + -0.3
1,740,065 + +0.0
1,740,065 + -1.3
1,740,065 + +0.0
1,740,065 + +1.7
1,740,065 + +0.6
1,740,065 + +0.1
1,740,065 + +1.3
1,740,065 + -3.6
1,740,065 + -1.4
1,740,065 + -1.0
1,740,065 + -0.4
1,740,065 + +0.0
1,740,065 + +0.9
1,740,065 + +0.4
1,740,065 + -0.0
1,740,065 + +0.2
1,740,065 + -0.6
1,740,065 + -0.5
1,740,065 + +0.0
1,740,065 + -0.8
1,740,065 + -1.0
1,740,065 + +0.2
1,740,065 + -0.5
1,740,065 + +0.1
1,740,065 + +0.2
1,740,065 + +0.3
1,740,065 + -0.9
1,740,065 + +1.6
1,740,065 + +0.7
1,740,065 + -2.0
1,740,065 + -0.4
1,740,065 + +1.4
1,740,065 + +0.0
1,740,065 + -2.0
1,740,065 + +0.1
1,740,065 + +0.5
1,740,065 + +0.3
1,740,067 + +1.1
1,740,067 + -2.2
1,740,067 + -0.3
1,740,067 + -2.2
1,740,067 + -0.1
1,740,067 + +1.1
1,740,067 + -0.5
1,740,067 + -0.7
1,740,067 + +0.7
1,740,067 + +0.1
1,740,067 + -1.2
1,740,067 + -1.0
1,740,067 + -1.5
1,740,067 + +0.3
1,740,067 + +0.6

Or see this region's nucleotide sequence