Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01240

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01239 and MPMX19_01240 are separated by 222 nucleotidesMPMX19_01240 and MPMX19_01241 are separated by 188 nucleotides MPMX19_01239: MPMX19_01239 - CTP synthase, at 1,288,855 to 1,290,486 _01239 MPMX19_01240: MPMX19_01240 - Protein-export membrane protein SecG, at 1,290,709 to 1,291,032 _01240 MPMX19_01241: MPMX19_01241 - Triosephosphate isomerase, at 1,291,221 to 1,291,976 _01241 Position (kb) 1290 1291 1292Strain fitness (log2 ratio) -2 -1 0 1at 1291.068 kb on - strandat 1291.068 kb on - strandat 1291.068 kb on - strandat 1291.088 kb on - strandat 1291.088 kb on - strandat 1291.118 kb on - strandat 1291.118 kb on - strandat 1291.118 kb on - strandat 1291.151 kb on + strandat 1291.152 kb on - strandat 1291.152 kb on - strandat 1291.163 kb on - strandat 1291.163 kb on - strandat 1292.002 kb on + strandat 1292.002 kb on + strandat 1292.002 kb on + strandat 1292.002 kb on + strandat 1292.002 kb on + strandat 1292.002 kb on + strandat 1292.002 kb on + strandat 1292.002 kb on + strandat 1292.002 kb on + strandat 1292.002 kb on + strandat 1292.002 kb on + strandat 1292.002 kb on + strandat 1292.002 kb on + strandat 1292.002 kb on + strandat 1292.002 kb on + strandat 1292.003 kb on - strandat 1292.003 kb on - strandat 1292.003 kb on - strandat 1292.003 kb on - strandat 1292.003 kb on - strandat 1292.003 kb on - strandat 1292.003 kb on - strandat 1292.003 kb on - strandat 1292.003 kb on - strandat 1292.003 kb on - strandat 1292.003 kb on - strandat 1292.003 kb on - strandat 1292.003 kb on - strandat 1292.003 kb on - strandat 1292.003 kb on - strandat 1292.003 kb on - strandat 1292.003 kb on - strandat 1292.003 kb on - strandat 1292.003 kb on - strandat 1292.003 kb on - strandat 1292.003 kb on - strandat 1292.003 kb on - strandat 1292.003 kb on - strandat 1292.003 kb on - strandat 1292.004 kb on + strandat 1292.004 kb on + strandat 1292.004 kb on + strandat 1292.005 kb on - strandat 1292.005 kb on - strandat 1292.005 kb on - strandat 1292.005 kb on - strandat 1292.005 kb on - strandat 1292.005 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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1,291,068 - +1.1
1,291,068 - -1.8
1,291,068 - -0.0
1,291,088 - +1.1
1,291,088 - -0.8
1,291,118 - -0.7
1,291,118 - -1.3
1,291,118 - -2.2
1,291,151 + +0.1
1,291,152 - -0.3
1,291,152 - -1.7
1,291,163 - -0.2
1,291,163 - -0.3
1,292,002 + -0.6
1,292,002 + +0.1
1,292,002 + -0.8
1,292,002 + -1.3
1,292,002 + +1.3
1,292,002 + +0.5
1,292,002 + -0.5
1,292,002 + +1.1
1,292,002 + -0.2
1,292,002 + -0.1
1,292,002 + +1.5
1,292,002 + +0.1
1,292,002 + -2.2
1,292,002 + -2.1
1,292,002 + +0.3
1,292,003 - -0.3
1,292,003 - -0.2
1,292,003 - +0.8
1,292,003 - -0.9
1,292,003 - -0.0
1,292,003 - -2.3
1,292,003 - -1.4
1,292,003 - -0.3
1,292,003 - -0.6
1,292,003 - -1.3
1,292,003 - -1.1
1,292,003 - +0.1
1,292,003 - +0.3
1,292,003 - +0.8
1,292,003 - -1.7
1,292,003 - +0.0
1,292,003 - +0.4
1,292,003 - +0.6
1,292,003 - -1.1
1,292,003 - +0.3
1,292,003 - +0.4
1,292,003 - -0.2
1,292,003 - -0.7
1,292,003 - -0.7
1,292,004 + +0.3
1,292,004 + +0.7
1,292,004 + +1.3
1,292,005 - -0.8
1,292,005 - -0.2
1,292,005 - +0.5
1,292,005 - -0.7
1,292,005 - +0.7
1,292,005 - -0.9

Or see this region's nucleotide sequence