Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00017 and MPMX19_00018 are separated by 6 nucleotides MPMX19_00018 and MPMX19_00019 are separated by 105 nucleotides MPMX19_00019 and MPMX19_00020 are separated by 76 nucleotides MPMX19_00020 and MPMX19_00021 are separated by 112 nucleotides
MPMX19_00017: MPMX19_00017 - Beta-barrel assembly-enhancing protease, at 22,182 to 23,840
_00017
MPMX19_00018: MPMX19_00018 - hypothetical protein, at 23,847 to 25,160
_00018
MPMX19_00019: MPMX19_00019 - hypothetical protein, at 25,266 to 25,532
_00019
MPMX19_00020: MPMX19_00020 - hypothetical protein, at 25,609 to 25,728
_00020
MPMX19_00021: MPMX19_00021 - hypothetical protein, at 25,841 to 26,521
_00021
Position (kb) 23
24
25
26 Strain fitness (log2 ratio) -2
-1
0
1
2 at 22.938 kb on + strand, within MPMX19_00017 at 22.938 kb on + strand, within MPMX19_00017 at 22.938 kb on + strand, within MPMX19_00017 at 22.938 kb on + strand, within MPMX19_00017 at 22.938 kb on + strand, within MPMX19_00017 at 22.938 kb on + strand, within MPMX19_00017 at 22.938 kb on + strand, within MPMX19_00017 at 22.938 kb on + strand, within MPMX19_00017 at 22.938 kb on + strand, within MPMX19_00017 at 22.938 kb on + strand, within MPMX19_00017 at 22.939 kb on - strand, within MPMX19_00017 at 22.939 kb on - strand, within MPMX19_00017 at 22.939 kb on - strand, within MPMX19_00017 at 22.939 kb on - strand, within MPMX19_00017 at 22.939 kb on - strand, within MPMX19_00017 at 22.939 kb on - strand, within MPMX19_00017 at 22.939 kb on - strand, within MPMX19_00017 at 22.939 kb on - strand, within MPMX19_00017 at 22.939 kb on - strand, within MPMX19_00017 at 23.001 kb on + strand, within MPMX19_00017 at 23.001 kb on + strand, within MPMX19_00017 at 23.001 kb on + strand, within MPMX19_00017 at 23.001 kb on + strand, within MPMX19_00017 at 23.001 kb on + strand, within MPMX19_00017 at 23.001 kb on + strand, within MPMX19_00017 at 23.001 kb on + strand, within MPMX19_00017 at 23.001 kb on + strand, within MPMX19_00017 at 23.001 kb on + strand, within MPMX19_00017 at 23.001 kb on + strand, within MPMX19_00017 at 23.001 kb on + strand, within MPMX19_00017 at 23.001 kb on + strand, within MPMX19_00017 at 23.001 kb on + strand, within MPMX19_00017 at 23.001 kb on + strand, within MPMX19_00017 at 23.001 kb on + strand, within MPMX19_00017 at 23.001 kb on + strand, within MPMX19_00017 at 23.001 kb on + strand, within MPMX19_00017 at 23.001 kb on + strand, within MPMX19_00017 at 23.002 kb on - strand, within MPMX19_00017 at 23.002 kb on - strand, within MPMX19_00017 at 23.002 kb on - strand, within MPMX19_00017 at 23.002 kb on - strand, within MPMX19_00017 at 23.002 kb on - strand, within MPMX19_00017 at 23.002 kb on - strand, within MPMX19_00017 at 23.002 kb on - strand, within MPMX19_00017 at 23.002 kb on - strand, within MPMX19_00017 at 23.002 kb on - strand, within MPMX19_00017 at 23.002 kb on - strand, within MPMX19_00017 at 23.175 kb on + strand, within MPMX19_00017 at 23.176 kb on - strand, within MPMX19_00017 at 23.176 kb on - strand, within MPMX19_00017 at 23.282 kb on + strand, within MPMX19_00017 at 23.282 kb on + strand, within MPMX19_00017 at 23.282 kb on + strand, within MPMX19_00017 at 23.283 kb on - strand, within MPMX19_00017 at 23.382 kb on + strand, within MPMX19_00017 at 23.382 kb on + strand, within MPMX19_00017 at 23.382 kb on + strand, within MPMX19_00017 at 23.382 kb on + strand, within MPMX19_00017 at 23.383 kb on - strand, within MPMX19_00017 at 23.383 kb on - strand, within MPMX19_00017 at 23.484 kb on + strand, within MPMX19_00017 at 23.673 kb on + strand, within MPMX19_00017 at 23.673 kb on + strand, within MPMX19_00017 at 23.673 kb on + strand, within MPMX19_00017 at 23.673 kb on + strand, within MPMX19_00017 at 23.673 kb on + strand, within MPMX19_00017 at 23.673 kb on + strand, within MPMX19_00017 at 23.673 kb on + strand, within MPMX19_00017 at 23.673 kb on + strand, within MPMX19_00017 at 23.673 kb on + strand, within MPMX19_00017 at 23.673 kb on + strand, within MPMX19_00017 at 23.673 kb on + strand, within MPMX19_00017 at 23.673 kb on + strand, within MPMX19_00017 at 23.673 kb on + strand, within MPMX19_00017 at 23.673 kb on + strand, within MPMX19_00017 at 23.673 kb on + strand, within MPMX19_00017 at 23.673 kb on + strand, within MPMX19_00017 at 23.673 kb on + strand, within MPMX19_00017 at 23.673 kb on + strand, within MPMX19_00017 at 23.673 kb on + strand, within MPMX19_00017 at 23.673 kb on + strand, within MPMX19_00017 at 23.673 kb on + strand, within MPMX19_00017 at 23.673 kb on + strand, within MPMX19_00017 at 23.673 kb on + strand, within MPMX19_00017 at 23.673 kb on + strand, within MPMX19_00017 at 23.674 kb on - strand, within MPMX19_00017 at 23.674 kb on - strand, within MPMX19_00017 at 23.674 kb on - strand, within MPMX19_00017 at 23.674 kb on - strand, within MPMX19_00017 at 23.674 kb on - strand, within MPMX19_00017 at 23.674 kb on - strand, within MPMX19_00017 at 23.674 kb on - strand, within MPMX19_00017 at 23.674 kb on - strand, within MPMX19_00017 at 23.674 kb on - strand, within MPMX19_00017 at 23.674 kb on - strand, within MPMX19_00017 at 23.674 kb on - strand, within MPMX19_00017 at 23.781 kb on + strand at 23.781 kb on + strand at 23.838 kb on + strand at 23.838 kb on + strand at 23.838 kb on + strand at 23.838 kb on + strand at 23.838 kb on + strand at 23.839 kb on - strand at 23.839 kb on - strand at 23.925 kb on + strand at 23.925 kb on + strand at 23.926 kb on - strand at 23.926 kb on - strand at 23.926 kb on - strand at 23.926 kb on - strand at 23.926 kb on - strand at 23.926 kb on - strand at 23.946 kb on + strand at 23.946 kb on + strand at 23.946 kb on + strand at 23.946 kb on + strand at 23.946 kb on + strand at 23.947 kb on - strand at 23.947 kb on - strand at 23.947 kb on - strand at 23.947 kb on - strand at 23.947 kb on - strand at 23.947 kb on - strand at 23.982 kb on + strand, within MPMX19_00018 at 23.982 kb on + strand, within MPMX19_00018 at 23.982 kb on + strand, within MPMX19_00018 at 23.982 kb on + strand, within MPMX19_00018 at 23.982 kb on + strand, within MPMX19_00018 at 23.982 kb on + strand, within MPMX19_00018 at 23.982 kb on + strand, within MPMX19_00018 at 23.982 kb on + strand, within MPMX19_00018 at 23.983 kb on - strand, within MPMX19_00018 at 24.261 kb on + strand, within MPMX19_00018 at 24.261 kb on + strand, within MPMX19_00018 at 24.261 kb on + strand, within MPMX19_00018 at 24.261 kb on + strand, within MPMX19_00018 at 24.261 kb on + strand, within MPMX19_00018 at 24.261 kb on + strand, within MPMX19_00018 at 24.261 kb on + strand, within MPMX19_00018 at 24.261 kb on + strand, within MPMX19_00018 at 24.261 kb on + strand, within MPMX19_00018 at 24.262 kb on - strand, within MPMX19_00018 at 24.262 kb on - strand, within MPMX19_00018 at 24.262 kb on - strand, within MPMX19_00018 at 24.262 kb on - strand, within MPMX19_00018 at 24.262 kb on - strand, within MPMX19_00018 at 24.262 kb on - strand, within MPMX19_00018 at 24.262 kb on - strand, within MPMX19_00018 at 24.262 kb on - strand, within MPMX19_00018 at 24.262 kb on - strand, within MPMX19_00018 at 24.262 kb on - strand, within MPMX19_00018 at 24.262 kb on - strand, within MPMX19_00018 at 24.262 kb on - strand, within MPMX19_00018 at 24.336 kb on + strand, within MPMX19_00018 at 24.336 kb on + strand, within MPMX19_00018 at 24.336 kb on + strand, within MPMX19_00018 at 24.337 kb on - strand, within MPMX19_00018 at 24.337 kb on - strand, within MPMX19_00018 at 24.337 kb on - strand, within MPMX19_00018 at 24.483 kb on + strand, within MPMX19_00018 at 24.484 kb on - strand, within MPMX19_00018 at 24.504 kb on + strand, within MPMX19_00018 at 24.504 kb on + strand, within MPMX19_00018 at 24.504 kb on + strand, within MPMX19_00018 at 24.504 kb on + strand, within MPMX19_00018 at 24.504 kb on + strand, within MPMX19_00018 at 24.505 kb on - strand, within MPMX19_00018 at 24.505 kb on - strand, within MPMX19_00018 at 24.648 kb on + strand, within MPMX19_00018 at 24.648 kb on + strand, within MPMX19_00018 at 24.649 kb on - strand, within MPMX19_00018 at 24.649 kb on - strand, within MPMX19_00018 at 24.730 kb on + strand, within MPMX19_00018 at 25.002 kb on + strand, within MPMX19_00018 at 25.002 kb on + strand, within MPMX19_00018 at 25.003 kb on - strand, within MPMX19_00018 at 25.130 kb on + strand at 25.130 kb on + strand at 25.130 kb on + strand at 25.130 kb on + strand at 25.130 kb on + strand at 25.130 kb on + strand at 25.130 kb on + strand at 25.130 kb on + strand at 25.130 kb on + strand at 25.130 kb on + strand at 25.131 kb on - strand at 25.131 kb on - strand at 25.131 kb on - strand at 25.131 kb on - strand at 25.131 kb on - strand at 25.131 kb on - strand at 25.131 kb on - strand at 25.131 kb on - strand at 25.131 kb on - strand at 25.131 kb on - strand at 25.131 kb on - strand at 25.158 kb on + strand at 25.214 kb on + strand at 25.214 kb on + strand at 25.214 kb on + strand at 25.214 kb on + strand at 25.214 kb on + strand at 25.215 kb on - strand at 25.215 kb on - strand at 25.215 kb on - strand at 25.215 kb on - strand at 25.215 kb on - strand at 25.259 kb on - strand at 25.350 kb on - strand, within MPMX19_00019 at 25.597 kb on + strand at 25.597 kb on + strand at 25.598 kb on - strand at 25.598 kb on - strand at 25.682 kb on + strand, within MPMX19_00020 at 25.683 kb on - strand, within MPMX19_00020 at 25.683 kb on - strand, within MPMX19_00020 at 25.683 kb on - strand, within MPMX19_00020 at 25.802 kb on + strand at 25.803 kb on - strand at 25.858 kb on + strand at 25.858 kb on + strand at 25.858 kb on + strand at 25.858 kb on + strand at 25.858 kb on + strand at 25.858 kb on + strand at 25.858 kb on + strand at 25.858 kb on + strand at 25.858 kb on + strand at 25.858 kb on + strand at 25.858 kb on + strand at 25.858 kb on + strand at 25.858 kb on + strand at 25.858 kb on + strand at 25.859 kb on - strand at 25.859 kb on - strand at 25.859 kb on - strand at 25.859 kb on - strand at 25.859 kb on - strand at 25.859 kb on - strand at 25.859 kb on - strand at 25.859 kb on - strand at 25.859 kb on - strand at 25.859 kb on - strand at 25.859 kb on - strand at 25.859 kb on - strand at 25.859 kb on - strand at 25.859 kb on - strand at 26.049 kb on - strand, within MPMX19_00021 at 26.049 kb on - strand, within MPMX19_00021 at 26.049 kb on - strand, within MPMX19_00021 at 26.049 kb on - strand, within MPMX19_00021 at 26.052 kb on - strand, within MPMX19_00021 at 26.052 kb on - strand, within MPMX19_00021 at 26.052 kb on - strand, within MPMX19_00021 at 26.052 kb on - strand, within MPMX19_00021
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 22,938 + MPMX19_00017 0.46 +1.3 22,938 + MPMX19_00017 0.46 -1.6 22,938 + MPMX19_00017 0.46 -1.7 22,938 + MPMX19_00017 0.46 +1.2 22,938 + MPMX19_00017 0.46 -0.3 22,938 + MPMX19_00017 0.46 +0.6 22,938 + MPMX19_00017 0.46 +0.2 22,938 + MPMX19_00017 0.46 +0.3 22,938 + MPMX19_00017 0.46 -1.3 22,938 + MPMX19_00017 0.46 -0.9 22,939 - MPMX19_00017 0.46 -1.7 22,939 - MPMX19_00017 0.46 +0.0 22,939 - MPMX19_00017 0.46 -0.9 22,939 - MPMX19_00017 0.46 +1.2 22,939 - MPMX19_00017 0.46 -0.7 22,939 - MPMX19_00017 0.46 -0.7 22,939 - MPMX19_00017 0.46 -0.3 22,939 - MPMX19_00017 0.46 -0.2 22,939 - MPMX19_00017 0.46 +1.7 23,001 + MPMX19_00017 0.49 +0.1 23,001 + MPMX19_00017 0.49 -0.8 23,001 + MPMX19_00017 0.49 -0.2 23,001 + MPMX19_00017 0.49 +1.2 23,001 + MPMX19_00017 0.49 -1.0 23,001 + MPMX19_00017 0.49 -1.4 23,001 + MPMX19_00017 0.49 -0.6 23,001 + MPMX19_00017 0.49 +0.9 23,001 + MPMX19_00017 0.49 +0.0 23,001 + MPMX19_00017 0.49 +0.0 23,001 + MPMX19_00017 0.49 -2.0 23,001 + MPMX19_00017 0.49 +0.9 23,001 + MPMX19_00017 0.49 -0.1 23,001 + MPMX19_00017 0.49 -0.1 23,001 + MPMX19_00017 0.49 +1.2 23,001 + MPMX19_00017 0.49 +1.7 23,001 + MPMX19_00017 0.49 -0.7 23,001 + MPMX19_00017 0.49 +0.0 23,002 - MPMX19_00017 0.49 +0.6 23,002 - MPMX19_00017 0.49 -1.6 23,002 - MPMX19_00017 0.49 -0.7 23,002 - MPMX19_00017 0.49 -1.2 23,002 - MPMX19_00017 0.49 +0.9 23,002 - MPMX19_00017 0.49 +0.0 23,002 - MPMX19_00017 0.49 -0.3 23,002 - MPMX19_00017 0.49 -0.8 23,002 - MPMX19_00017 0.49 +0.7 23,002 - MPMX19_00017 0.49 -0.3 23,175 + MPMX19_00017 0.60 +0.8 23,176 - MPMX19_00017 0.60 -0.7 23,176 - MPMX19_00017 0.60 +0.6 23,282 + MPMX19_00017 0.66 -1.0 23,282 + MPMX19_00017 0.66 -1.2 23,282 + MPMX19_00017 0.66 -0.2 23,283 - MPMX19_00017 0.66 +0.7 23,382 + MPMX19_00017 0.72 -0.3 23,382 + MPMX19_00017 0.72 -2.0 23,382 + MPMX19_00017 0.72 +0.7 23,382 + MPMX19_00017 0.72 -1.2 23,383 - MPMX19_00017 0.72 -0.7 23,383 - MPMX19_00017 0.72 +0.3 23,484 + MPMX19_00017 0.78 +0.4 23,673 + MPMX19_00017 0.90 -1.4 23,673 + MPMX19_00017 0.90 -0.9 23,673 + MPMX19_00017 0.90 +0.6 23,673 + MPMX19_00017 0.90 +0.4 23,673 + MPMX19_00017 0.90 -0.6 23,673 + MPMX19_00017 0.90 -2.0 23,673 + MPMX19_00017 0.90 -1.4 23,673 + MPMX19_00017 0.90 +0.2 23,673 + MPMX19_00017 0.90 +0.0 23,673 + MPMX19_00017 0.90 -0.5 23,673 + MPMX19_00017 0.90 +1.2 23,673 + MPMX19_00017 0.90 +1.3 23,673 + MPMX19_00017 0.90 -0.7 23,673 + MPMX19_00017 0.90 +0.4 23,673 + MPMX19_00017 0.90 +0.9 23,673 + MPMX19_00017 0.90 +0.3 23,673 + MPMX19_00017 0.90 +0.7 23,673 + MPMX19_00017 0.90 -0.8 23,673 + MPMX19_00017 0.90 -0.3 23,673 + MPMX19_00017 0.90 -0.6 23,673 + MPMX19_00017 0.90 -0.4 23,673 + MPMX19_00017 0.90 -1.0 23,673 + MPMX19_00017 0.90 +0.3 23,673 + MPMX19_00017 0.90 +0.4 23,674 - MPMX19_00017 0.90 -0.6 23,674 - MPMX19_00017 0.90 -0.9 23,674 - MPMX19_00017 0.90 +0.8 23,674 - MPMX19_00017 0.90 -1.2 23,674 - MPMX19_00017 0.90 -1.6 23,674 - MPMX19_00017 0.90 -0.4 23,674 - MPMX19_00017 0.90 -0.4 23,674 - MPMX19_00017 0.90 -0.4 23,674 - MPMX19_00017 0.90 -0.9 23,674 - MPMX19_00017 0.90 -1.7 23,674 - MPMX19_00017 0.90 -0.9 23,781 + +1.6 23,781 + -0.3 23,838 + +0.6 23,838 + -0.4 23,838 + -0.0 23,838 + -0.2 23,838 + -0.9 23,839 - +2.0 23,839 - +0.1 23,925 + -0.0 23,925 + -1.2 23,926 - -1.6 23,926 - +1.7 23,926 - -0.9 23,926 - +0.3 23,926 - -0.2 23,926 - -0.9 23,946 + +0.1 23,946 + -0.2 23,946 + -1.2 23,946 + -0.8 23,946 + -1.2 23,947 - -1.0 23,947 - +1.0 23,947 - +0.2 23,947 - +0.3 23,947 - -1.0 23,947 - +0.4 23,982 + MPMX19_00018 0.10 +1.1 23,982 + MPMX19_00018 0.10 -0.9 23,982 + MPMX19_00018 0.10 -0.6 23,982 + MPMX19_00018 0.10 -0.2 23,982 + MPMX19_00018 0.10 +0.2 23,982 + MPMX19_00018 0.10 +2.2 23,982 + MPMX19_00018 0.10 -0.6 23,982 + MPMX19_00018 0.10 +0.7 23,983 - MPMX19_00018 0.10 +0.3 24,261 + MPMX19_00018 0.32 -0.6 24,261 + MPMX19_00018 0.32 -0.2 24,261 + MPMX19_00018 0.32 -1.4 24,261 + MPMX19_00018 0.32 +0.0 24,261 + MPMX19_00018 0.32 +0.1 24,261 + MPMX19_00018 0.32 -2.2 24,261 + MPMX19_00018 0.32 +0.9 24,261 + MPMX19_00018 0.32 +1.1 24,261 + MPMX19_00018 0.32 +0.6 24,262 - MPMX19_00018 0.32 -1.0 24,262 - MPMX19_00018 0.32 +0.4 24,262 - MPMX19_00018 0.32 +0.4 24,262 - MPMX19_00018 0.32 +0.6 24,262 - MPMX19_00018 0.32 +1.1 24,262 - MPMX19_00018 0.32 -0.6 24,262 - MPMX19_00018 0.32 +0.2 24,262 - MPMX19_00018 0.32 -0.6 24,262 - MPMX19_00018 0.32 +0.4 24,262 - MPMX19_00018 0.32 -0.5 24,262 - MPMX19_00018 0.32 -1.0 24,262 - MPMX19_00018 0.32 +0.7 24,336 + MPMX19_00018 0.37 +0.7 24,336 + MPMX19_00018 0.37 +0.2 24,336 + MPMX19_00018 0.37 +1.1 24,337 - MPMX19_00018 0.37 -0.9 24,337 - MPMX19_00018 0.37 +0.6 24,337 - MPMX19_00018 0.37 -0.8 24,483 + MPMX19_00018 0.48 +1.0 24,484 - MPMX19_00018 0.48 +0.0 24,504 + MPMX19_00018 0.50 +0.0 24,504 + MPMX19_00018 0.50 -1.7 24,504 + MPMX19_00018 0.50 -0.1 24,504 + MPMX19_00018 0.50 +0.5 24,504 + MPMX19_00018 0.50 -2.3 24,505 - MPMX19_00018 0.50 +1.0 24,505 - MPMX19_00018 0.50 -0.2 24,648 + MPMX19_00018 0.61 +0.0 24,648 + MPMX19_00018 0.61 +0.1 24,649 - MPMX19_00018 0.61 -0.8 24,649 - MPMX19_00018 0.61 -1.8 24,730 + MPMX19_00018 0.67 +0.4 25,002 + MPMX19_00018 0.88 -0.6 25,002 + MPMX19_00018 0.88 -0.2 25,003 - MPMX19_00018 0.88 +0.1 25,130 + -1.6 25,130 + +0.4 25,130 + +0.0 25,130 + +0.5 25,130 + +0.0 25,130 + -1.2 25,130 + +0.6 25,130 + +0.1 25,130 + +0.9 25,130 + +0.1 25,131 - -0.6 25,131 - -0.7 25,131 - +1.1 25,131 - +0.7 25,131 - -0.6 25,131 - +0.7 25,131 - -0.5 25,131 - -0.2 25,131 - -0.7 25,131 - -0.6 25,131 - +1.1 25,158 + +0.4 25,214 + +0.4 25,214 + -0.2 25,214 + -1.4 25,214 + -0.1 25,214 + +1.1 25,215 - -1.6 25,215 - -1.2 25,215 - -0.3 25,215 - -0.1 25,215 - +1.0 25,259 - -1.0 25,350 - MPMX19_00019 0.31 +0.8 25,597 + -1.2 25,597 + +0.9 25,598 - +0.0 25,598 - -0.5 25,682 + MPMX19_00020 0.61 -1.9 25,683 - MPMX19_00020 0.62 -0.6 25,683 - MPMX19_00020 0.62 -1.2 25,683 - MPMX19_00020 0.62 +1.9 25,802 + +0.0 25,803 - -1.9 25,858 + -0.2 25,858 + -0.9 25,858 + +1.6 25,858 + +0.0 25,858 + -1.2 25,858 + -0.4 25,858 + -2.0 25,858 + +0.8 25,858 + -1.5 25,858 + +1.1 25,858 + +0.2 25,858 + +0.8 25,858 + +0.2 25,858 + +1.0 25,859 - -2.0 25,859 - +1.1 25,859 - -0.4 25,859 - +0.1 25,859 - -1.8 25,859 - -0.9 25,859 - -0.1 25,859 - -0.5 25,859 - +0.7 25,859 - -2.4 25,859 - +0.4 25,859 - +0.2 25,859 - +0.4 25,859 - -1.7 26,049 - MPMX19_00021 0.31 +0.2 26,049 - MPMX19_00021 0.31 +0.0 26,049 - MPMX19_00021 0.31 -0.2 26,049 - MPMX19_00021 0.31 +0.7 26,052 - MPMX19_00021 0.31 -0.5 26,052 - MPMX19_00021 0.31 -1.1 26,052 - MPMX19_00021 0.31 +0.6 26,052 - MPMX19_00021 0.31 -0.5
Or see this region's nucleotide sequence