Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS11045

Experiment: biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
2,466,068	+				-0.4
2,466,068	+				-0.2
2,466,068	+				-1.7
2,466,068	+				-0.4
2,466,069	-				+0.4
2,466,076	+				-1.2
2,466,076	+				-1.4
2,466,174	+		LRK53_RS11035	0.12	-1.3
2,466,175	-		LRK53_RS11035	0.12	-0.7
2,466,189	+		LRK53_RS11035	0.19	-0.9
2,466,268	+		LRK53_RS11035	0.56	+0.1
2,466,283	+		LRK53_RS11035	0.63	-0.9
2,466,283	+		LRK53_RS11035	0.63	-2.4
2,466,284	-		LRK53_RS11035	0.63	+1.1
2,466,400	+				-0.6
2,466,400	+				-0.4
2,466,400	+				-1.7
2,466,400	+				-0.9
2,466,400	+				+1.2
2,466,401	-				-1.3
2,466,401	-				-0.4
2,466,401	-				-0.6
2,466,401	-				-2.9
2,466,401	-				+1.2
2,466,401	-				+0.6
2,466,401	-				-0.7
2,466,401	-				-2.3
2,466,401	-				-0.0
2,466,401	-				-1.6
2,466,459	+				-2.5
2,466,459	+				+0.6
2,466,460	-				-2.7
2,466,460	-				-0.4
2,466,716	-				-1.2
2,466,716	-				-0.6
2,466,738	+				-0.7
2,466,738	+				-1.9
2,466,807	+		LRK53_RS11040	0.25	+0.4
2,466,807	+		LRK53_RS11040	0.25	-0.7
2,466,808	-		LRK53_RS11040	0.25	-0.5
2,466,831	+		LRK53_RS11040	0.34	-0.3
2,466,852	+		LRK53_RS11040	0.41	-0.4
2,466,852	+		LRK53_RS11040	0.41	-1.7
2,466,984	+		LRK53_RS11040	0.89	-0.6
2,467,048	-				-1.0
2,467,048	-				+0.2
2,467,048	-				-0.2
2,467,118	+				-1.1
2,467,118	+				+0.0
2,467,118	+				+0.4
2,467,119	-				-0.6
2,467,119	-				+0.0
2,467,478	+		LRK53_RS11045	0.42	+0.7
2,467,478	+		LRK53_RS11045	0.42	-1.4
2,467,479	-		LRK53_RS11045	0.42	-0.2
2,467,576	+		LRK53_RS11045	0.52	-1.3
2,467,576	+		LRK53_RS11045	0.52	-1.4
2,467,576	+		LRK53_RS11045	0.52	-2.0
2,467,576	+		LRK53_RS11045	0.52	+0.1
2,467,576	+		LRK53_RS11045	0.52	-0.6
2,467,577	-		LRK53_RS11045	0.52	-1.4
2,467,577	-		LRK53_RS11045	0.52	-0.5
2,467,615	+		LRK53_RS11045	0.56	-2.4
2,467,615	+		LRK53_RS11045	0.56	+1.4
2,467,616	-		LRK53_RS11045	0.56	-0.4
2,467,784	+		LRK53_RS11045	0.72	+0.1
2,467,784	+		LRK53_RS11045	0.72	-2.3
2,467,784	+		LRK53_RS11045	0.72	+1.3
2,467,784	+		LRK53_RS11045	0.72	-0.6
2,467,785	-		LRK53_RS11045	0.72	+0.2
2,467,785	-		LRK53_RS11045	0.72	-2.1
2,467,785	-		LRK53_RS11045	0.72	-0.9
2,467,785	-		LRK53_RS11045	0.72	-0.4
2,467,787	+		LRK53_RS11045	0.72	-0.5
2,467,787	+		LRK53_RS11045	0.72	-0.9
2,467,787	+		LRK53_RS11045	0.72	+1.4
2,467,787	+		LRK53_RS11045	0.72	+1.0
2,467,787	+		LRK53_RS11045	0.72	-0.4
2,467,788	-		LRK53_RS11045	0.72	-1.2
2,467,788	-		LRK53_RS11045	0.72	-1.7
2,467,788	-		LRK53_RS11045	0.72	-1.5
2,467,788	-		LRK53_RS11045	0.72	+1.0
2,467,788	-		LRK53_RS11045	0.72	+0.1
2,467,788	-		LRK53_RS11045	0.72	-0.3
2,467,788	-		LRK53_RS11045	0.72	-0.8
2,467,838	-		LRK53_RS11045	0.77	-0.2
2,467,838	-		LRK53_RS11045	0.77	+1.2
2,467,952	+		LRK53_RS11045	0.88	+0.1
2,467,954	+		LRK53_RS11045	0.88	-1.0
2,467,954	+		LRK53_RS11045	0.88	-1.0
2,467,954	+		LRK53_RS11045	0.88	-1.2
2,467,954	+		LRK53_RS11045	0.88	-0.9
2,467,954	+		LRK53_RS11045	0.88	-1.0
2,467,954	+		LRK53_RS11045	0.88	-0.1
2,467,954	+		LRK53_RS11045	0.88	-2.0
2,467,954	+		LRK53_RS11045	0.88	+1.3
2,467,954	+		LRK53_RS11045	0.88	+1.1
2,467,954	+		LRK53_RS11045	0.88	-0.3
2,467,954	+		LRK53_RS11045	0.88	-2.2
2,467,955	-		LRK53_RS11045	0.88	-0.5
2,467,955	-		LRK53_RS11045	0.88	-1.6
2,467,955	-		LRK53_RS11045	0.88	-0.5
2,467,955	-		LRK53_RS11045	0.88	-2.3
2,467,955	-		LRK53_RS11045	0.88	-1.1
2,467,955	-		LRK53_RS11045	0.88	-0.3
2,467,955	-		LRK53_RS11045	0.88	+0.9
2,467,955	-		LRK53_RS11045	0.88	-0.7
2,467,955	-		LRK53_RS11045	0.88	-0.9
2,468,006	+				+1.3
2,468,007	-				-0.5
2,468,007	-				-1.0
2,468,007	-				-3.0
2,468,024	+				-1.5
2,468,025	-				+0.9
2,468,027	+				-0.2
2,468,027	+				+0.0
2,468,027	+				-0.9
2,468,027	+				+0.2
2,468,027	+				-1.3
2,468,027	+				-0.0
2,468,028	-				+0.7
2,468,028	-				-1.7
2,468,028	-				+0.4
2,468,028	-				+0.6
2,468,028	-				-1.0
2,468,028	-				+0.6
2,468,028	-				-1.7
2,468,028	-				-1.5
2,468,028	-				+0.1
2,468,028	-				-0.2
2,468,028	-				-1.4
2,468,304	-				-0.4
2,468,355	+		LRK53_RS11050	0.14	+0.1
2,468,355	+		LRK53_RS11050	0.14	-2.3
2,468,355	+		LRK53_RS11050	0.14	-0.7
2,468,356	-		LRK53_RS11050	0.15	-1.0
2,468,356	-		LRK53_RS11050	0.15	+0.1
2,468,356	-		LRK53_RS11050	0.15	-2.1
2,468,403	-		LRK53_RS11050	0.42	+0.9
2,468,403	-		LRK53_RS11050	0.42	+0.4
2,468,422	-		LRK53_RS11050	0.53	-1.8
2,468,543	+				-1.4
2,468,544	-				-1.0
2,468,549	-				-0.2
2,468,549	-				-0.5
2,468,861	+		LRK53_RS11055	0.80	+0.4
2,468,861	+		LRK53_RS11055	0.80	-1.7
2,468,861	+		LRK53_RS11055	0.80	+0.6
2,468,904	+				-1.0
2,468,904	+				+0.6
2,468,904	+				-1.4
2,468,905	-				-0.0
2,468,905	-				-0.7
2,468,921	-				-0.0
2,468,921	-				-0.2
2,468,921	-				+2.5
2,468,921	-				+1.0
2,468,921	-				-0.2
2,468,921	-				+1.3
2,468,921	-				-2.1
2,468,921	-				-0.7
2,468,922	+				+0.9
2,468,925	+				-2.2
2,468,925	+				+0.4
2,468,941	+				-1.0
2,468,941	+				-1.6
2,468,941	+				-1.2
2,468,941	+				-1.0
2,468,942	-				-1.3
2,468,942	-				-0.6
2,468,942	-				-0.8
2,468,942	-				+2.1
2,468,942	-				-0.0
2,469,015	+				+0.4
2,469,015	+				-0.5
2,469,015	+				-2.1
2,469,015	+				-0.3
2,469,015	+				+0.7
2,469,015	+				+0.8
2,469,015	+				-0.4
2,469,015	+				-2.4
2,469,015	+				-2.2
2,469,015	+				-0.3
2,469,015	+				-1.2
2,469,015	+				-0.5
2,469,015	+				-0.4
2,469,015	+				-1.0
2,469,015	+				-0.6
2,469,015	+				-1.3
2,469,015	+				-1.4
2,469,015	+				-0.6
2,469,015	+				+1.2
2,469,016	-				-1.5
2,469,016	-				-0.7
2,469,016	-				-0.6
2,469,016	-				-1.0
2,469,016	-				-1.5
2,469,016	-				-2.1
2,469,016	-				-1.2
2,469,016	-				-0.4
2,469,016	-				-1.9
2,469,016	-				-0.2
2,469,016	-				-1.2
2,469,016	-				+0.1