Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS08365

Experiment: biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS08360 and LRK53_RS08365 are separated by 551 nucleotidesLRK53_RS08365 and LRK53_RS08370 overlap by 32 nucleotides LRK53_RS08360: LRK53_RS08360 - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 1,878,583 to 1,879,452 _RS08360 LRK53_RS08365: LRK53_RS08365 - phosphatase PAP2 family protein, at 1,880,004 to 1,880,567 _RS08365 LRK53_RS08370: LRK53_RS08370 - glycosyltransferase family 1 protein, at 1,880,536 to 1,881,696 _RS08370 Position (kb) 1880 1881Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1879.697 kb on + strandat 1880.204 kb on + strand, within LRK53_RS08365at 1880.204 kb on + strand, within LRK53_RS08365at 1880.204 kb on + strand, within LRK53_RS08365at 1880.204 kb on + strand, within LRK53_RS08365at 1880.204 kb on + strand, within LRK53_RS08365at 1880.204 kb on + strand, within LRK53_RS08365at 1880.204 kb on + strand, within LRK53_RS08365at 1880.204 kb on + strand, within LRK53_RS08365at 1880.204 kb on + strand, within LRK53_RS08365at 1880.205 kb on - strand, within LRK53_RS08365at 1880.205 kb on - strand, within LRK53_RS08365at 1880.205 kb on - strand, within LRK53_RS08365at 1880.205 kb on - strand, within LRK53_RS08365at 1880.205 kb on - strand, within LRK53_RS08365at 1880.205 kb on - strand, within LRK53_RS08365at 1880.205 kb on - strand, within LRK53_RS08365at 1880.205 kb on - strand, within LRK53_RS08365at 1880.205 kb on - strand, within LRK53_RS08365at 1880.205 kb on - strand, within LRK53_RS08365at 1880.205 kb on - strand, within LRK53_RS08365at 1880.205 kb on - strand, within LRK53_RS08365at 1880.205 kb on - strand, within LRK53_RS08365at 1880.205 kb on - strand, within LRK53_RS08365at 1880.205 kb on - strand, within LRK53_RS08365at 1880.311 kb on + strand, within LRK53_RS08365at 1880.408 kb on - strand, within LRK53_RS08365at 1880.736 kb on + strand, within LRK53_RS08370at 1880.796 kb on - strand, within LRK53_RS08370at 1880.993 kb on + strand, within LRK53_RS08370at 1880.994 kb on - strand, within LRK53_RS08370at 1880.994 kb on - strand, within LRK53_RS08370at 1880.994 kb on - strand, within LRK53_RS08370at 1881.080 kb on + strand, within LRK53_RS08370at 1881.080 kb on + strand, within LRK53_RS08370at 1881.081 kb on - strand, within LRK53_RS08370at 1881.081 kb on - strand, within LRK53_RS08370at 1881.081 kb on - strand, within LRK53_RS08370at 1881.081 kb on - strand, within LRK53_RS08370at 1881.081 kb on - strand, within LRK53_RS08370at 1881.081 kb on - strand, within LRK53_RS08370at 1881.081 kb on - strand, within LRK53_RS08370at 1881.081 kb on - strand, within LRK53_RS08370at 1881.081 kb on - strand, within LRK53_RS08370at 1881.162 kb on + strand, within LRK53_RS08370at 1881.163 kb on - strand, within LRK53_RS08370at 1881.189 kb on + strand, within LRK53_RS08370at 1881.189 kb on + strand, within LRK53_RS08370at 1881.190 kb on - strand, within LRK53_RS08370at 1881.190 kb on - strand, within LRK53_RS08370at 1881.190 kb on - strand, within LRK53_RS08370at 1881.279 kb on - strand, within LRK53_RS08370at 1881.314 kb on + strand, within LRK53_RS08370at 1881.326 kb on + strand, within LRK53_RS08370at 1881.326 kb on + strand, within LRK53_RS08370at 1881.326 kb on + strand, within LRK53_RS08370at 1881.326 kb on + strand, within LRK53_RS08370at 1881.326 kb on + strand, within LRK53_RS08370at 1881.326 kb on + strand, within LRK53_RS08370at 1881.327 kb on - strand, within LRK53_RS08370at 1881.327 kb on - strand, within LRK53_RS08370at 1881.327 kb on - strand, within LRK53_RS08370at 1881.327 kb on - strand, within LRK53_RS08370at 1881.327 kb on - strand, within LRK53_RS08370at 1881.327 kb on - strand, within LRK53_RS08370at 1881.327 kb on - strand, within LRK53_RS08370at 1881.327 kb on - strand, within LRK53_RS08370at 1881.327 kb on - strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.425 kb on + strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370at 1881.426 kb on - strand, within LRK53_RS08370

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
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1,879,697 + -3.0
1,880,204 + LRK53_RS08365 0.35 -2.0
1,880,204 + LRK53_RS08365 0.35 -3.4
1,880,204 + LRK53_RS08365 0.35 -2.2
1,880,204 + LRK53_RS08365 0.35 -3.7
1,880,204 + LRK53_RS08365 0.35 -1.8
1,880,204 + LRK53_RS08365 0.35 +1.6
1,880,204 + LRK53_RS08365 0.35 -0.7
1,880,204 + LRK53_RS08365 0.35 +0.7
1,880,204 + LRK53_RS08365 0.35 +0.2
1,880,205 - LRK53_RS08365 0.36 +0.6
1,880,205 - LRK53_RS08365 0.36 +0.8
1,880,205 - LRK53_RS08365 0.36 -1.2
1,880,205 - LRK53_RS08365 0.36 -0.9
1,880,205 - LRK53_RS08365 0.36 -2.0
1,880,205 - LRK53_RS08365 0.36 -0.2
1,880,205 - LRK53_RS08365 0.36 -1.4
1,880,205 - LRK53_RS08365 0.36 -2.0
1,880,205 - LRK53_RS08365 0.36 +0.1
1,880,205 - LRK53_RS08365 0.36 -1.1
1,880,205 - LRK53_RS08365 0.36 -0.8
1,880,205 - LRK53_RS08365 0.36 -2.8
1,880,205 - LRK53_RS08365 0.36 -0.2
1,880,205 - LRK53_RS08365 0.36 -1.8
1,880,205 - LRK53_RS08365 0.36 -1.3
1,880,311 + LRK53_RS08365 0.54 -0.0
1,880,408 - LRK53_RS08365 0.72 -2.4
1,880,736 + LRK53_RS08370 0.17 +0.7
1,880,796 - LRK53_RS08370 0.22 +0.1
1,880,993 + LRK53_RS08370 0.39 -2.0
1,880,994 - LRK53_RS08370 0.39 -3.3
1,880,994 - LRK53_RS08370 0.39 -1.3
1,880,994 - LRK53_RS08370 0.39 +1.1
1,881,080 + LRK53_RS08370 0.47 -0.6
1,881,080 + LRK53_RS08370 0.47 -2.0
1,881,081 - LRK53_RS08370 0.47 +0.2
1,881,081 - LRK53_RS08370 0.47 -0.5
1,881,081 - LRK53_RS08370 0.47 -1.6
1,881,081 - LRK53_RS08370 0.47 -0.7
1,881,081 - LRK53_RS08370 0.47 -1.9
1,881,081 - LRK53_RS08370 0.47 -1.7
1,881,081 - LRK53_RS08370 0.47 -0.5
1,881,081 - LRK53_RS08370 0.47 -2.0
1,881,081 - LRK53_RS08370 0.47 +0.6
1,881,162 + LRK53_RS08370 0.54 -2.2
1,881,163 - LRK53_RS08370 0.54 +0.6
1,881,189 + LRK53_RS08370 0.56 -1.7
1,881,189 + LRK53_RS08370 0.56 -0.4
1,881,190 - LRK53_RS08370 0.56 -0.7
1,881,190 - LRK53_RS08370 0.56 +0.1
1,881,190 - LRK53_RS08370 0.56 -0.4
1,881,279 - LRK53_RS08370 0.64 -0.9
1,881,314 + LRK53_RS08370 0.67 -0.5
1,881,326 + LRK53_RS08370 0.68 -0.3
1,881,326 + LRK53_RS08370 0.68 -2.0
1,881,326 + LRK53_RS08370 0.68 -1.6
1,881,326 + LRK53_RS08370 0.68 -2.3
1,881,326 + LRK53_RS08370 0.68 -0.7
1,881,326 + LRK53_RS08370 0.68 -0.8
1,881,327 - LRK53_RS08370 0.68 -1.0
1,881,327 - LRK53_RS08370 0.68 -1.0
1,881,327 - LRK53_RS08370 0.68 -0.7
1,881,327 - LRK53_RS08370 0.68 +1.2
1,881,327 - LRK53_RS08370 0.68 -3.3
1,881,327 - LRK53_RS08370 0.68 -1.3
1,881,327 - LRK53_RS08370 0.68 +0.2
1,881,327 - LRK53_RS08370 0.68 -0.3
1,881,327 - LRK53_RS08370 0.68 -2.1
1,881,425 + LRK53_RS08370 0.77 +0.0
1,881,425 + LRK53_RS08370 0.77 -0.9
1,881,425 + LRK53_RS08370 0.77 +1.4
1,881,425 + LRK53_RS08370 0.77 +0.5
1,881,425 + LRK53_RS08370 0.77 -0.9
1,881,425 + LRK53_RS08370 0.77 -0.0
1,881,425 + LRK53_RS08370 0.77 -1.7
1,881,425 + LRK53_RS08370 0.77 -0.9
1,881,425 + LRK53_RS08370 0.77 +0.0
1,881,425 + LRK53_RS08370 0.77 -0.0
1,881,425 + LRK53_RS08370 0.77 +0.1
1,881,425 + LRK53_RS08370 0.77 -1.8
1,881,425 + LRK53_RS08370 0.77 -1.1
1,881,425 + LRK53_RS08370 0.77 -1.4
1,881,425 + LRK53_RS08370 0.77 -0.8
1,881,425 + LRK53_RS08370 0.77 +0.3
1,881,425 + LRK53_RS08370 0.77 -1.5
1,881,425 + LRK53_RS08370 0.77 -0.4
1,881,425 + LRK53_RS08370 0.77 -0.8
1,881,425 + LRK53_RS08370 0.77 -2.8
1,881,426 - LRK53_RS08370 0.77 -1.2
1,881,426 - LRK53_RS08370 0.77 -1.0
1,881,426 - LRK53_RS08370 0.77 -2.1
1,881,426 - LRK53_RS08370 0.77 -1.4
1,881,426 - LRK53_RS08370 0.77 -0.2
1,881,426 - LRK53_RS08370 0.77 +0.8
1,881,426 - LRK53_RS08370 0.77 -0.2
1,881,426 - LRK53_RS08370 0.77 -0.7
1,881,426 - LRK53_RS08370 0.77 -1.2
1,881,426 - LRK53_RS08370 0.77 -0.2
1,881,426 - LRK53_RS08370 0.77 -0.7
1,881,426 - LRK53_RS08370 0.77 +2.1
1,881,426 - LRK53_RS08370 0.77 +1.5
1,881,426 - LRK53_RS08370 0.77 -0.9
1,881,426 - LRK53_RS08370 0.77 -1.2
1,881,426 - LRK53_RS08370 0.77 -1.1
1,881,426 - LRK53_RS08370 0.77 -1.9
1,881,426 - LRK53_RS08370 0.77 -3.1
1,881,426 - LRK53_RS08370 0.77 -1.7
1,881,426 - LRK53_RS08370 0.77 -2.4
1,881,426 - LRK53_RS08370 0.77 -1.2
1,881,426 - LRK53_RS08370 0.77 -1.6
1,881,426 - LRK53_RS08370 0.77 +0.6
1,881,426 - LRK53_RS08370 0.77 -1.4
1,881,426 - LRK53_RS08370 0.77 -1.2
1,881,426 - LRK53_RS08370 0.77 -2.6
1,881,426 - LRK53_RS08370 0.77 +2.2

Or see this region's nucleotide sequence