Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS07270

Experiment: biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS07260 and LRK53_RS07265 overlap by 17 nucleotidesLRK53_RS07265 and LRK53_RS07270 are separated by 120 nucleotidesLRK53_RS07270 and LRK53_RS07275 are separated by 123 nucleotides LRK53_RS07260: LRK53_RS07260 - Maf family nucleotide pyrophosphatase, at 1,632,228 to 1,632,803 _RS07260 LRK53_RS07265: LRK53_RS07265 - CPBP family intramembrane metalloprotease, at 1,632,787 to 1,633,614 _RS07265 LRK53_RS07270: LRK53_RS07270 - MAPEG family protein, at 1,633,735 to 1,634,124 _RS07270 LRK53_RS07275: LRK53_RS07275 - zinc metallopeptidase, at 1,634,248 to 1,635,105 _RS07275 Position (kb) 1633 1634 1635Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1632.935 kb on + strand, within LRK53_RS07265at 1632.935 kb on + strand, within LRK53_RS07265at 1632.935 kb on + strand, within LRK53_RS07265at 1632.936 kb on - strand, within LRK53_RS07265at 1632.936 kb on - strand, within LRK53_RS07265at 1632.944 kb on + strand, within LRK53_RS07265at 1632.944 kb on + strand, within LRK53_RS07265at 1632.944 kb on + strand, within LRK53_RS07265at 1632.944 kb on + strand, within LRK53_RS07265at 1632.944 kb on + strand, within LRK53_RS07265at 1632.945 kb on - strand, within LRK53_RS07265at 1632.945 kb on - strand, within LRK53_RS07265at 1632.945 kb on - strand, within LRK53_RS07265at 1632.945 kb on - strand, within LRK53_RS07265at 1632.945 kb on - strand, within LRK53_RS07265at 1632.945 kb on - strand, within LRK53_RS07265at 1633.122 kb on + strand, within LRK53_RS07265at 1633.122 kb on + strand, within LRK53_RS07265at 1633.122 kb on + strand, within LRK53_RS07265at 1633.123 kb on - strand, within LRK53_RS07265at 1633.123 kb on - strand, within LRK53_RS07265at 1633.123 kb on - strand, within LRK53_RS07265at 1633.354 kb on + strand, within LRK53_RS07265at 1633.354 kb on + strand, within LRK53_RS07265at 1633.354 kb on + strand, within LRK53_RS07265at 1633.355 kb on - strand, within LRK53_RS07265at 1633.355 kb on - strand, within LRK53_RS07265at 1633.355 kb on - strand, within LRK53_RS07265at 1633.357 kb on + strand, within LRK53_RS07265at 1633.357 kb on + strand, within LRK53_RS07265at 1633.357 kb on + strand, within LRK53_RS07265at 1633.357 kb on + strand, within LRK53_RS07265at 1633.358 kb on - strand, within LRK53_RS07265at 1633.358 kb on - strand, within LRK53_RS07265at 1633.358 kb on - strand, within LRK53_RS07265at 1633.358 kb on - strand, within LRK53_RS07265at 1633.499 kb on + strand, within LRK53_RS07265at 1633.499 kb on + strand, within LRK53_RS07265at 1633.499 kb on + strand, within LRK53_RS07265at 1633.499 kb on + strand, within LRK53_RS07265at 1633.499 kb on + strand, within LRK53_RS07265at 1633.499 kb on + strand, within LRK53_RS07265at 1633.499 kb on + strand, within LRK53_RS07265at 1633.499 kb on + strand, within LRK53_RS07265at 1633.499 kb on + strand, within LRK53_RS07265at 1633.500 kb on - strand, within LRK53_RS07265at 1633.500 kb on - strand, within LRK53_RS07265at 1633.500 kb on - strand, within LRK53_RS07265at 1633.500 kb on - strand, within LRK53_RS07265at 1633.500 kb on - strand, within LRK53_RS07265at 1633.500 kb on - strand, within LRK53_RS07265at 1633.500 kb on - strand, within LRK53_RS07265at 1633.500 kb on - strand, within LRK53_RS07265at 1633.500 kb on - strand, within LRK53_RS07265at 1633.500 kb on - strand, within LRK53_RS07265at 1633.665 kb on + strandat 1633.666 kb on - strandat 1633.666 kb on - strandat 1633.666 kb on - strandat 1633.712 kb on + strandat 1633.712 kb on + strandat 1633.712 kb on + strandat 1633.844 kb on + strand, within LRK53_RS07270at 1633.844 kb on + strand, within LRK53_RS07270at 1633.845 kb on - strand, within LRK53_RS07270at 1633.856 kb on + strand, within LRK53_RS07270at 1633.857 kb on - strand, within LRK53_RS07270at 1633.857 kb on - strand, within LRK53_RS07270at 1633.857 kb on - strand, within LRK53_RS07270at 1633.857 kb on - strand, within LRK53_RS07270at 1633.857 kb on - strand, within LRK53_RS07270at 1633.916 kb on + strand, within LRK53_RS07270at 1633.916 kb on + strand, within LRK53_RS07270at 1634.036 kb on + strand, within LRK53_RS07270at 1634.036 kb on + strand, within LRK53_RS07270at 1634.036 kb on + strand, within LRK53_RS07270at 1634.037 kb on - strand, within LRK53_RS07270at 1634.037 kb on - strand, within LRK53_RS07270at 1634.037 kb on - strand, within LRK53_RS07270at 1634.037 kb on - strand, within LRK53_RS07270at 1634.037 kb on - strand, within LRK53_RS07270at 1634.150 kb on + strandat 1634.150 kb on + strandat 1634.150 kb on + strandat 1634.151 kb on - strandat 1634.151 kb on - strandat 1634.247 kb on + strandat 1634.247 kb on + strandat 1634.247 kb on + strandat 1634.548 kb on + strand, within LRK53_RS07275at 1634.548 kb on + strand, within LRK53_RS07275at 1634.548 kb on + strand, within LRK53_RS07275at 1634.548 kb on + strand, within LRK53_RS07275at 1634.548 kb on + strand, within LRK53_RS07275at 1634.548 kb on + strand, within LRK53_RS07275at 1634.548 kb on + strand, within LRK53_RS07275at 1634.548 kb on + strand, within LRK53_RS07275at 1634.548 kb on + strand, within LRK53_RS07275at 1634.548 kb on + strand, within LRK53_RS07275at 1634.548 kb on + strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.549 kb on - strand, within LRK53_RS07275at 1634.629 kb on + strand, within LRK53_RS07275at 1634.629 kb on + strand, within LRK53_RS07275at 1634.629 kb on + strand, within LRK53_RS07275at 1634.630 kb on - strand, within LRK53_RS07275at 1634.630 kb on - strand, within LRK53_RS07275at 1634.653 kb on + strand, within LRK53_RS07275at 1634.653 kb on + strand, within LRK53_RS07275at 1634.653 kb on + strand, within LRK53_RS07275at 1634.653 kb on + strand, within LRK53_RS07275at 1634.653 kb on + strand, within LRK53_RS07275at 1634.653 kb on + strand, within LRK53_RS07275at 1634.653 kb on + strand, within LRK53_RS07275at 1634.654 kb on - strand, within LRK53_RS07275at 1634.654 kb on - strand, within LRK53_RS07275at 1634.654 kb on - strand, within LRK53_RS07275at 1634.654 kb on - strand, within LRK53_RS07275at 1634.654 kb on - strand, within LRK53_RS07275at 1634.654 kb on - strand, within LRK53_RS07275at 1634.654 kb on - strand, within LRK53_RS07275at 1634.654 kb on - strand, within LRK53_RS07275at 1634.654 kb on - strand, within LRK53_RS07275at 1634.654 kb on - strand, within LRK53_RS07275at 1634.654 kb on - strand, within LRK53_RS07275at 1634.722 kb on + strand, within LRK53_RS07275at 1634.722 kb on + strand, within LRK53_RS07275at 1634.722 kb on + strand, within LRK53_RS07275at 1634.722 kb on + strand, within LRK53_RS07275at 1634.723 kb on - strand, within LRK53_RS07275at 1634.723 kb on - strand, within LRK53_RS07275at 1634.723 kb on - strand, within LRK53_RS07275at 1634.863 kb on + strand, within LRK53_RS07275at 1634.863 kb on + strand, within LRK53_RS07275at 1635.003 kb on + strand, within LRK53_RS07275at 1635.003 kb on + strand, within LRK53_RS07275at 1635.004 kb on - strand, within LRK53_RS07275at 1635.004 kb on - strand, within LRK53_RS07275at 1635.004 kb on - strand, within LRK53_RS07275at 1635.004 kb on - strand, within LRK53_RS07275at 1635.004 kb on - strand, within LRK53_RS07275at 1635.004 kb on - strand, within LRK53_RS07275

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
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1,632,935 + LRK53_RS07265 0.18 -1.4
1,632,935 + LRK53_RS07265 0.18 -1.9
1,632,935 + LRK53_RS07265 0.18 -0.2
1,632,936 - LRK53_RS07265 0.18 -0.8
1,632,936 - LRK53_RS07265 0.18 +0.4
1,632,944 + LRK53_RS07265 0.19 -1.7
1,632,944 + LRK53_RS07265 0.19 +0.1
1,632,944 + LRK53_RS07265 0.19 -2.6
1,632,944 + LRK53_RS07265 0.19 +0.7
1,632,944 + LRK53_RS07265 0.19 -1.9
1,632,945 - LRK53_RS07265 0.19 +0.3
1,632,945 - LRK53_RS07265 0.19 -0.6
1,632,945 - LRK53_RS07265 0.19 -1.8
1,632,945 - LRK53_RS07265 0.19 -0.7
1,632,945 - LRK53_RS07265 0.19 +0.5
1,632,945 - LRK53_RS07265 0.19 -0.9
1,633,122 + LRK53_RS07265 0.40 -1.7
1,633,122 + LRK53_RS07265 0.40 -2.3
1,633,122 + LRK53_RS07265 0.40 -1.0
1,633,123 - LRK53_RS07265 0.41 -0.5
1,633,123 - LRK53_RS07265 0.41 -0.6
1,633,123 - LRK53_RS07265 0.41 -1.1
1,633,354 + LRK53_RS07265 0.68 -0.6
1,633,354 + LRK53_RS07265 0.68 -2.1
1,633,354 + LRK53_RS07265 0.68 -3.0
1,633,355 - LRK53_RS07265 0.69 -2.0
1,633,355 - LRK53_RS07265 0.69 -0.6
1,633,355 - LRK53_RS07265 0.69 +0.7
1,633,357 + LRK53_RS07265 0.69 -1.1
1,633,357 + LRK53_RS07265 0.69 +0.2
1,633,357 + LRK53_RS07265 0.69 +0.5
1,633,357 + LRK53_RS07265 0.69 -0.1
1,633,358 - LRK53_RS07265 0.69 -2.4
1,633,358 - LRK53_RS07265 0.69 -0.1
1,633,358 - LRK53_RS07265 0.69 -0.8
1,633,358 - LRK53_RS07265 0.69 -2.8
1,633,499 + LRK53_RS07265 0.86 -0.4
1,633,499 + LRK53_RS07265 0.86 -2.1
1,633,499 + LRK53_RS07265 0.86 -0.2
1,633,499 + LRK53_RS07265 0.86 -0.2
1,633,499 + LRK53_RS07265 0.86 -2.7
1,633,499 + LRK53_RS07265 0.86 +2.2
1,633,499 + LRK53_RS07265 0.86 -1.5
1,633,499 + LRK53_RS07265 0.86 -0.1
1,633,499 + LRK53_RS07265 0.86 -1.2
1,633,500 - LRK53_RS07265 0.86 -1.7
1,633,500 - LRK53_RS07265 0.86 -0.6
1,633,500 - LRK53_RS07265 0.86 -1.3
1,633,500 - LRK53_RS07265 0.86 -0.1
1,633,500 - LRK53_RS07265 0.86 -0.2
1,633,500 - LRK53_RS07265 0.86 +1.9
1,633,500 - LRK53_RS07265 0.86 -1.8
1,633,500 - LRK53_RS07265 0.86 -0.4
1,633,500 - LRK53_RS07265 0.86 -1.1
1,633,500 - LRK53_RS07265 0.86 -1.4
1,633,665 + -0.4
1,633,666 - -3.0
1,633,666 - +0.2
1,633,666 - -4.1
1,633,712 + -1.7
1,633,712 + +1.2
1,633,712 + +0.9
1,633,844 + LRK53_RS07270 0.28 -2.3
1,633,844 + LRK53_RS07270 0.28 -0.4
1,633,845 - LRK53_RS07270 0.28 +0.4
1,633,856 + LRK53_RS07270 0.31 -0.8
1,633,857 - LRK53_RS07270 0.31 -1.0
1,633,857 - LRK53_RS07270 0.31 +0.1
1,633,857 - LRK53_RS07270 0.31 -1.9
1,633,857 - LRK53_RS07270 0.31 -2.1
1,633,857 - LRK53_RS07270 0.31 -3.5
1,633,916 + LRK53_RS07270 0.46 -0.4
1,633,916 + LRK53_RS07270 0.46 -0.3
1,634,036 + LRK53_RS07270 0.77 +0.1
1,634,036 + LRK53_RS07270 0.77 -0.6
1,634,036 + LRK53_RS07270 0.77 -1.5
1,634,037 - LRK53_RS07270 0.77 +0.2
1,634,037 - LRK53_RS07270 0.77 -0.7
1,634,037 - LRK53_RS07270 0.77 -1.6
1,634,037 - LRK53_RS07270 0.77 -0.3
1,634,037 - LRK53_RS07270 0.77 -1.7
1,634,150 + -1.6
1,634,150 + +0.5
1,634,150 + -2.1
1,634,151 - +0.6
1,634,151 - -0.3
1,634,247 + -1.2
1,634,247 + -1.0
1,634,247 + -0.2
1,634,548 + LRK53_RS07275 0.35 -1.7
1,634,548 + LRK53_RS07275 0.35 -3.7
1,634,548 + LRK53_RS07275 0.35 +1.9
1,634,548 + LRK53_RS07275 0.35 -0.9
1,634,548 + LRK53_RS07275 0.35 -1.0
1,634,548 + LRK53_RS07275 0.35 -1.8
1,634,548 + LRK53_RS07275 0.35 -1.4
1,634,548 + LRK53_RS07275 0.35 -1.0
1,634,548 + LRK53_RS07275 0.35 -0.5
1,634,548 + LRK53_RS07275 0.35 -2.9
1,634,548 + LRK53_RS07275 0.35 -1.8
1,634,549 - LRK53_RS07275 0.35 +0.9
1,634,549 - LRK53_RS07275 0.35 -0.4
1,634,549 - LRK53_RS07275 0.35 -1.4
1,634,549 - LRK53_RS07275 0.35 -0.4
1,634,549 - LRK53_RS07275 0.35 -1.5
1,634,549 - LRK53_RS07275 0.35 +0.1
1,634,549 - LRK53_RS07275 0.35 -0.8
1,634,549 - LRK53_RS07275 0.35 -1.8
1,634,549 - LRK53_RS07275 0.35 -0.6
1,634,549 - LRK53_RS07275 0.35 -0.8
1,634,549 - LRK53_RS07275 0.35 -0.9
1,634,549 - LRK53_RS07275 0.35 -0.8
1,634,549 - LRK53_RS07275 0.35 -1.4
1,634,549 - LRK53_RS07275 0.35 -1.3
1,634,549 - LRK53_RS07275 0.35 -0.4
1,634,549 - LRK53_RS07275 0.35 +1.6
1,634,549 - LRK53_RS07275 0.35 +0.1
1,634,629 + LRK53_RS07275 0.44 +0.8
1,634,629 + LRK53_RS07275 0.44 -1.5
1,634,629 + LRK53_RS07275 0.44 +0.9
1,634,630 - LRK53_RS07275 0.45 -0.2
1,634,630 - LRK53_RS07275 0.45 -0.7
1,634,653 + LRK53_RS07275 0.47 -3.0
1,634,653 + LRK53_RS07275 0.47 -0.4
1,634,653 + LRK53_RS07275 0.47 +0.1
1,634,653 + LRK53_RS07275 0.47 +0.9
1,634,653 + LRK53_RS07275 0.47 -0.3
1,634,653 + LRK53_RS07275 0.47 +1.9
1,634,653 + LRK53_RS07275 0.47 -0.7
1,634,654 - LRK53_RS07275 0.47 -0.8
1,634,654 - LRK53_RS07275 0.47 -2.3
1,634,654 - LRK53_RS07275 0.47 -1.1
1,634,654 - LRK53_RS07275 0.47 -1.7
1,634,654 - LRK53_RS07275 0.47 -1.6
1,634,654 - LRK53_RS07275 0.47 -0.3
1,634,654 - LRK53_RS07275 0.47 -2.8
1,634,654 - LRK53_RS07275 0.47 +0.6
1,634,654 - LRK53_RS07275 0.47 -0.7
1,634,654 - LRK53_RS07275 0.47 -1.8
1,634,654 - LRK53_RS07275 0.47 -1.1
1,634,722 + LRK53_RS07275 0.55 -2.7
1,634,722 + LRK53_RS07275 0.55 -1.0
1,634,722 + LRK53_RS07275 0.55 -1.4
1,634,722 + LRK53_RS07275 0.55 -0.1
1,634,723 - LRK53_RS07275 0.55 -2.6
1,634,723 - LRK53_RS07275 0.55 -0.2
1,634,723 - LRK53_RS07275 0.55 -1.5
1,634,863 + LRK53_RS07275 0.72 -2.8
1,634,863 + LRK53_RS07275 0.72 +0.5
1,635,003 + LRK53_RS07275 0.88 -1.9
1,635,003 + LRK53_RS07275 0.88 +0.3
1,635,004 - LRK53_RS07275 0.88 -1.1
1,635,004 - LRK53_RS07275 0.88 -0.8
1,635,004 - LRK53_RS07275 0.88 -0.7
1,635,004 - LRK53_RS07275 0.88 -0.7
1,635,004 - LRK53_RS07275 0.88 +0.2
1,635,004 - LRK53_RS07275 0.88 +0.8

Or see this region's nucleotide sequence