Experiment: biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01315 and LRK53_RS01320 are separated by 542 nucleotides LRK53_RS01320 and LRK53_RS01325 are separated by 156 nucleotides
LRK53_RS01315: LRK53_RS01315 - heme o synthase, at 322,982 to 323,884
_RS01315
LRK53_RS01320: LRK53_RS01320 - hypothetical protein, at 324,427 to 324,660
_RS01320
LRK53_RS01325: LRK53_RS01325 - magnesium-translocating P-type ATPase, at 324,817 to 327,471
_RS01325
Position (kb) 324
325 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 323.465 kb on + strand, within LRK53_RS01315 at 323.465 kb on + strand, within LRK53_RS01315 at 323.466 kb on - strand, within LRK53_RS01315 at 323.546 kb on + strand, within LRK53_RS01315 at 323.546 kb on + strand, within LRK53_RS01315 at 323.546 kb on + strand, within LRK53_RS01315 at 323.546 kb on + strand, within LRK53_RS01315 at 323.546 kb on + strand, within LRK53_RS01315 at 323.546 kb on + strand, within LRK53_RS01315 at 323.546 kb on + strand, within LRK53_RS01315 at 323.547 kb on - strand, within LRK53_RS01315 at 323.547 kb on - strand, within LRK53_RS01315 at 323.547 kb on - strand, within LRK53_RS01315 at 323.547 kb on - strand, within LRK53_RS01315 at 323.547 kb on - strand, within LRK53_RS01315 at 323.547 kb on - strand, within LRK53_RS01315 at 323.547 kb on - strand, within LRK53_RS01315 at 323.618 kb on + strand, within LRK53_RS01315 at 323.618 kb on + strand, within LRK53_RS01315 at 323.618 kb on + strand, within LRK53_RS01315 at 323.618 kb on + strand, within LRK53_RS01315 at 323.618 kb on + strand, within LRK53_RS01315 at 323.618 kb on + strand, within LRK53_RS01315 at 323.618 kb on + strand, within LRK53_RS01315 at 323.618 kb on + strand, within LRK53_RS01315 at 323.618 kb on + strand, within LRK53_RS01315 at 323.618 kb on + strand, within LRK53_RS01315 at 323.618 kb on + strand, within LRK53_RS01315 at 323.618 kb on + strand, within LRK53_RS01315 at 323.618 kb on + strand, within LRK53_RS01315 at 323.618 kb on + strand, within LRK53_RS01315 at 323.618 kb on + strand, within LRK53_RS01315 at 323.618 kb on + strand, within LRK53_RS01315 at 323.618 kb on + strand, within LRK53_RS01315 at 323.618 kb on + strand, within LRK53_RS01315 at 323.618 kb on + strand, within LRK53_RS01315 at 323.619 kb on - strand, within LRK53_RS01315 at 323.619 kb on - strand, within LRK53_RS01315 at 323.619 kb on - strand, within LRK53_RS01315 at 323.619 kb on - strand, within LRK53_RS01315 at 323.619 kb on - strand, within LRK53_RS01315 at 323.619 kb on - strand, within LRK53_RS01315 at 323.619 kb on - strand, within LRK53_RS01315 at 323.619 kb on - strand, within LRK53_RS01315 at 323.619 kb on - strand, within LRK53_RS01315 at 323.619 kb on - strand, within LRK53_RS01315 at 323.619 kb on - strand, within LRK53_RS01315 at 323.619 kb on - strand, within LRK53_RS01315 at 323.619 kb on - strand, within LRK53_RS01315 at 323.619 kb on - strand, within LRK53_RS01315 at 323.619 kb on - strand, within LRK53_RS01315 at 323.619 kb on - strand, within LRK53_RS01315 at 323.681 kb on + strand, within LRK53_RS01315 at 323.681 kb on + strand, within LRK53_RS01315 at 323.681 kb on + strand, within LRK53_RS01315 at 323.681 kb on + strand, within LRK53_RS01315 at 323.681 kb on + strand, within LRK53_RS01315 at 323.681 kb on + strand, within LRK53_RS01315 at 323.681 kb on + strand, within LRK53_RS01315 at 323.681 kb on + strand, within LRK53_RS01315 at 323.681 kb on + strand, within LRK53_RS01315 at 323.682 kb on - strand, within LRK53_RS01315 at 323.682 kb on - strand, within LRK53_RS01315 at 323.682 kb on - strand, within LRK53_RS01315 at 323.682 kb on - strand, within LRK53_RS01315 at 323.682 kb on - strand, within LRK53_RS01315 at 323.682 kb on - strand, within LRK53_RS01315 at 323.682 kb on - strand, within LRK53_RS01315 at 323.682 kb on - strand, within LRK53_RS01315 at 323.720 kb on + strand, within LRK53_RS01315 at 323.720 kb on + strand, within LRK53_RS01315 at 323.720 kb on + strand, within LRK53_RS01315 at 323.720 kb on + strand, within LRK53_RS01315 at 323.720 kb on + strand, within LRK53_RS01315 at 323.720 kb on + strand, within LRK53_RS01315 at 323.720 kb on + strand, within LRK53_RS01315 at 323.721 kb on - strand, within LRK53_RS01315 at 323.721 kb on - strand, within LRK53_RS01315 at 323.721 kb on - strand, within LRK53_RS01315 at 323.721 kb on - strand, within LRK53_RS01315 at 323.721 kb on - strand, within LRK53_RS01315 at 323.721 kb on - strand, within LRK53_RS01315 at 323.721 kb on - strand, within LRK53_RS01315 at 323.721 kb on - strand, within LRK53_RS01315 at 323.721 kb on - strand, within LRK53_RS01315 at 323.721 kb on - strand, within LRK53_RS01315 at 323.723 kb on + strand, within LRK53_RS01315 at 323.723 kb on + strand, within LRK53_RS01315 at 323.723 kb on + strand, within LRK53_RS01315 at 323.723 kb on + strand, within LRK53_RS01315 at 323.723 kb on + strand, within LRK53_RS01315 at 323.724 kb on - strand, within LRK53_RS01315 at 323.724 kb on - strand, within LRK53_RS01315 at 323.724 kb on - strand, within LRK53_RS01315 at 323.724 kb on - strand, within LRK53_RS01315 at 323.759 kb on + strand, within LRK53_RS01315 at 323.759 kb on + strand, within LRK53_RS01315 at 323.759 kb on + strand, within LRK53_RS01315 at 323.759 kb on + strand, within LRK53_RS01315 at 323.759 kb on + strand, within LRK53_RS01315 at 323.760 kb on - strand, within LRK53_RS01315 at 323.760 kb on - strand, within LRK53_RS01315 at 323.760 kb on - strand, within LRK53_RS01315 at 323.760 kb on - strand, within LRK53_RS01315 at 323.780 kb on + strand, within LRK53_RS01315 at 323.780 kb on + strand, within LRK53_RS01315 at 323.780 kb on + strand, within LRK53_RS01315 at 323.780 kb on + strand, within LRK53_RS01315 at 323.780 kb on + strand, within LRK53_RS01315 at 323.780 kb on + strand, within LRK53_RS01315 at 323.780 kb on + strand, within LRK53_RS01315 at 323.780 kb on + strand, within LRK53_RS01315 at 323.780 kb on + strand, within LRK53_RS01315 at 323.780 kb on + strand, within LRK53_RS01315 at 323.780 kb on + strand, within LRK53_RS01315 at 323.780 kb on + strand, within LRK53_RS01315 at 323.781 kb on - strand, within LRK53_RS01315 at 323.781 kb on - strand, within LRK53_RS01315 at 323.781 kb on - strand, within LRK53_RS01315 at 323.781 kb on - strand, within LRK53_RS01315 at 323.781 kb on - strand, within LRK53_RS01315 at 323.781 kb on - strand, within LRK53_RS01315 at 323.781 kb on - strand, within LRK53_RS01315 at 323.781 kb on - strand, within LRK53_RS01315 at 323.781 kb on - strand, within LRK53_RS01315 at 323.781 kb on - strand, within LRK53_RS01315 at 323.781 kb on - strand, within LRK53_RS01315 at 323.792 kb on + strand, within LRK53_RS01315 at 323.792 kb on + strand, within LRK53_RS01315 at 323.793 kb on - strand, within LRK53_RS01315 at 323.793 kb on - strand, within LRK53_RS01315 at 323.793 kb on - strand, within LRK53_RS01315 at 323.793 kb on - strand, within LRK53_RS01315 at 323.793 kb on - strand, within LRK53_RS01315 at 323.793 kb on - strand, within LRK53_RS01315 at 323.793 kb on - strand, within LRK53_RS01315 at 324.187 kb on + strand at 324.187 kb on + strand at 324.187 kb on + strand at 324.187 kb on + strand at 324.187 kb on + strand at 324.187 kb on + strand at 324.187 kb on + strand at 324.187 kb on + strand at 324.187 kb on + strand at 324.187 kb on + strand at 324.187 kb on + strand at 324.187 kb on + strand at 324.187 kb on + strand at 324.188 kb on - strand at 324.195 kb on + strand at 324.195 kb on + strand at 324.195 kb on + strand at 324.195 kb on + strand at 324.195 kb on + strand at 324.196 kb on - strand at 324.196 kb on - strand at 324.196 kb on - strand at 324.196 kb on - strand at 324.196 kb on - strand at 324.243 kb on + strand at 324.244 kb on - strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.254 kb on + strand at 324.255 kb on - strand at 324.255 kb on - strand at 324.255 kb on - strand at 324.255 kb on - strand at 324.255 kb on - strand at 324.255 kb on - strand at 324.264 kb on + strand at 324.264 kb on + strand at 324.264 kb on + strand at 324.265 kb on - strand at 324.265 kb on - strand at 324.265 kb on - strand at 324.269 kb on + strand at 324.269 kb on + strand at 324.269 kb on + strand at 324.269 kb on + strand at 324.269 kb on + strand at 324.269 kb on + strand at 324.314 kb on + strand at 324.314 kb on + strand at 324.314 kb on + strand at 324.314 kb on + strand at 324.314 kb on + strand at 324.315 kb on - strand at 324.315 kb on - strand at 324.315 kb on - strand at 324.315 kb on - strand at 324.315 kb on - strand at 324.369 kb on + strand at 324.508 kb on + strand, within LRK53_RS01320 at 324.508 kb on + strand, within LRK53_RS01320 at 324.508 kb on + strand, within LRK53_RS01320 at 324.508 kb on + strand, within LRK53_RS01320 at 324.508 kb on + strand, within LRK53_RS01320 at 324.509 kb on - strand, within LRK53_RS01320 at 324.509 kb on - strand, within LRK53_RS01320 at 324.509 kb on - strand, within LRK53_RS01320 at 324.509 kb on - strand, within LRK53_RS01320 at 324.509 kb on - strand, within LRK53_RS01320 at 324.509 kb on - strand, within LRK53_RS01320 at 324.509 kb on - strand, within LRK53_RS01320 at 324.509 kb on - strand, within LRK53_RS01320 at 324.647 kb on + strand at 325.170 kb on - strand, within LRK53_RS01325 at 325.170 kb on - strand, within LRK53_RS01325 at 325.170 kb on - strand, within LRK53_RS01325 at 325.170 kb on - strand, within LRK53_RS01325 at 325.299 kb on - strand, within LRK53_RS01325 at 325.504 kb on + strand, within LRK53_RS01325 at 325.504 kb on + strand, within LRK53_RS01325 at 325.504 kb on + strand, within LRK53_RS01325 at 325.504 kb on + strand, within LRK53_RS01325 at 325.504 kb on + strand, within LRK53_RS01325 at 325.505 kb on - strand, within LRK53_RS01325 at 325.505 kb on - strand, within LRK53_RS01325 at 325.570 kb on + strand, within LRK53_RS01325 at 325.570 kb on + strand, within LRK53_RS01325
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 323,465 + LRK53_RS01315 0.53 -1.9 323,465 + LRK53_RS01315 0.53 -1.6 323,466 - LRK53_RS01315 0.54 -1.1 323,546 + LRK53_RS01315 0.62 -2.9 323,546 + LRK53_RS01315 0.62 -0.4 323,546 + LRK53_RS01315 0.62 -2.5 323,546 + LRK53_RS01315 0.62 -1.1 323,546 + LRK53_RS01315 0.62 -1.1 323,546 + LRK53_RS01315 0.62 -1.1 323,546 + LRK53_RS01315 0.62 -1.7 323,547 - LRK53_RS01315 0.63 -0.2 323,547 - LRK53_RS01315 0.63 -1.0 323,547 - LRK53_RS01315 0.63 -0.6 323,547 - LRK53_RS01315 0.63 +1.3 323,547 - LRK53_RS01315 0.63 -1.6 323,547 - LRK53_RS01315 0.63 -2.4 323,547 - LRK53_RS01315 0.63 -1.7 323,618 + LRK53_RS01315 0.70 -1.5 323,618 + LRK53_RS01315 0.70 +0.1 323,618 + LRK53_RS01315 0.70 -1.3 323,618 + LRK53_RS01315 0.70 -2.6 323,618 + LRK53_RS01315 0.70 -2.4 323,618 + LRK53_RS01315 0.70 -0.5 323,618 + LRK53_RS01315 0.70 -1.0 323,618 + LRK53_RS01315 0.70 -0.1 323,618 + LRK53_RS01315 0.70 +0.2 323,618 + LRK53_RS01315 0.70 -2.4 323,618 + LRK53_RS01315 0.70 -1.8 323,618 + LRK53_RS01315 0.70 -1.6 323,618 + LRK53_RS01315 0.70 +0.7 323,618 + LRK53_RS01315 0.70 -3.0 323,618 + LRK53_RS01315 0.70 -1.8 323,618 + LRK53_RS01315 0.70 +0.2 323,618 + LRK53_RS01315 0.70 -0.7 323,618 + LRK53_RS01315 0.70 -0.3 323,618 + LRK53_RS01315 0.70 -2.5 323,619 - LRK53_RS01315 0.71 -0.9 323,619 - LRK53_RS01315 0.71 -1.2 323,619 - LRK53_RS01315 0.71 -0.4 323,619 - LRK53_RS01315 0.71 -1.7 323,619 - LRK53_RS01315 0.71 -0.6 323,619 - LRK53_RS01315 0.71 -0.4 323,619 - LRK53_RS01315 0.71 +0.5 323,619 - LRK53_RS01315 0.71 -1.1 323,619 - LRK53_RS01315 0.71 +0.1 323,619 - LRK53_RS01315 0.71 -0.8 323,619 - LRK53_RS01315 0.71 -0.6 323,619 - LRK53_RS01315 0.71 -0.9 323,619 - LRK53_RS01315 0.71 -0.1 323,619 - LRK53_RS01315 0.71 -0.5 323,619 - LRK53_RS01315 0.71 -0.7 323,619 - LRK53_RS01315 0.71 -1.8 323,681 + LRK53_RS01315 0.77 -0.1 323,681 + LRK53_RS01315 0.77 -1.4 323,681 + LRK53_RS01315 0.77 -1.4 323,681 + LRK53_RS01315 0.77 -1.5 323,681 + LRK53_RS01315 0.77 -0.1 323,681 + LRK53_RS01315 0.77 -0.3 323,681 + LRK53_RS01315 0.77 -2.8 323,681 + LRK53_RS01315 0.77 -0.6 323,681 + LRK53_RS01315 0.77 -1.1 323,682 - LRK53_RS01315 0.78 -0.8 323,682 - LRK53_RS01315 0.78 +0.2 323,682 - LRK53_RS01315 0.78 -1.4 323,682 - LRK53_RS01315 0.78 -0.9 323,682 - LRK53_RS01315 0.78 -0.9 323,682 - LRK53_RS01315 0.78 +0.1 323,682 - LRK53_RS01315 0.78 +0.2 323,682 - LRK53_RS01315 0.78 -1.5 323,720 + LRK53_RS01315 0.82 -1.5 323,720 + LRK53_RS01315 0.82 -2.5 323,720 + LRK53_RS01315 0.82 -1.6 323,720 + LRK53_RS01315 0.82 -2.0 323,720 + LRK53_RS01315 0.82 -1.5 323,720 + LRK53_RS01315 0.82 -2.2 323,720 + LRK53_RS01315 0.82 -0.9 323,721 - LRK53_RS01315 0.82 +0.1 323,721 - LRK53_RS01315 0.82 -1.5 323,721 - LRK53_RS01315 0.82 -1.2 323,721 - LRK53_RS01315 0.82 -0.9 323,721 - LRK53_RS01315 0.82 -1.4 323,721 - LRK53_RS01315 0.82 +0.1 323,721 - LRK53_RS01315 0.82 -1.1 323,721 - LRK53_RS01315 0.82 -0.6 323,721 - LRK53_RS01315 0.82 -1.4 323,721 - LRK53_RS01315 0.82 -1.8 323,723 + LRK53_RS01315 0.82 -1.4 323,723 + LRK53_RS01315 0.82 -2.6 323,723 + LRK53_RS01315 0.82 +1.2 323,723 + LRK53_RS01315 0.82 -1.3 323,723 + LRK53_RS01315 0.82 -2.5 323,724 - LRK53_RS01315 0.82 -2.0 323,724 - LRK53_RS01315 0.82 -2.8 323,724 - LRK53_RS01315 0.82 -0.5 323,724 - LRK53_RS01315 0.82 +0.5 323,759 + LRK53_RS01315 0.86 -2.6 323,759 + LRK53_RS01315 0.86 -2.0 323,759 + LRK53_RS01315 0.86 -1.2 323,759 + LRK53_RS01315 0.86 -1.0 323,759 + LRK53_RS01315 0.86 -1.4 323,760 - LRK53_RS01315 0.86 -0.6 323,760 - LRK53_RS01315 0.86 -0.8 323,760 - LRK53_RS01315 0.86 +0.7 323,760 - LRK53_RS01315 0.86 -2.5 323,780 + LRK53_RS01315 0.88 -0.1 323,780 + LRK53_RS01315 0.88 -0.8 323,780 + LRK53_RS01315 0.88 -1.1 323,780 + LRK53_RS01315 0.88 -1.5 323,780 + LRK53_RS01315 0.88 -0.6 323,780 + LRK53_RS01315 0.88 -1.3 323,780 + LRK53_RS01315 0.88 +0.2 323,780 + LRK53_RS01315 0.88 -1.7 323,780 + LRK53_RS01315 0.88 -2.3 323,780 + LRK53_RS01315 0.88 -0.3 323,780 + LRK53_RS01315 0.88 -0.1 323,780 + LRK53_RS01315 0.88 -0.8 323,781 - LRK53_RS01315 0.88 -1.0 323,781 - LRK53_RS01315 0.88 -1.7 323,781 - LRK53_RS01315 0.88 +0.5 323,781 - LRK53_RS01315 0.88 -0.8 323,781 - LRK53_RS01315 0.88 -1.5 323,781 - LRK53_RS01315 0.88 -0.8 323,781 - LRK53_RS01315 0.88 -1.3 323,781 - LRK53_RS01315 0.88 -0.6 323,781 - LRK53_RS01315 0.88 -0.3 323,781 - LRK53_RS01315 0.88 -1.5 323,781 - LRK53_RS01315 0.88 +0.7 323,792 + LRK53_RS01315 0.90 +0.2 323,792 + LRK53_RS01315 0.90 -1.3 323,793 - LRK53_RS01315 0.90 -0.8 323,793 - LRK53_RS01315 0.90 -2.5 323,793 - LRK53_RS01315 0.90 +1.4 323,793 - LRK53_RS01315 0.90 +0.1 323,793 - LRK53_RS01315 0.90 -3.0 323,793 - LRK53_RS01315 0.90 -1.1 323,793 - LRK53_RS01315 0.90 -0.0 324,187 + -1.0 324,187 + -1.3 324,187 + -0.3 324,187 + -0.6 324,187 + -1.9 324,187 + -1.7 324,187 + +0.2 324,187 + -0.8 324,187 + -0.4 324,187 + +0.6 324,187 + -2.2 324,187 + -2.2 324,187 + +0.8 324,188 - -0.9 324,195 + -0.1 324,195 + +0.4 324,195 + -0.9 324,195 + +0.2 324,195 + -2.2 324,196 - -0.2 324,196 - +0.9 324,196 - -2.3 324,196 - +0.2 324,196 - -1.3 324,243 + -1.2 324,244 - +0.8 324,254 + -2.6 324,254 + -3.2 324,254 + -0.3 324,254 + -4.4 324,254 + -1.6 324,254 + -0.8 324,254 + +1.8 324,254 + -0.9 324,254 + -1.6 324,254 + -2.5 324,254 + -2.8 324,254 + -1.5 324,254 + -1.0 324,254 + -2.1 324,254 + -0.6 324,254 + -0.6 324,254 + -1.3 324,255 - +1.5 324,255 - -0.8 324,255 - +0.5 324,255 - -1.8 324,255 - -1.3 324,255 - -0.8 324,264 + +0.2 324,264 + +0.1 324,264 + -0.9 324,265 - +0.5 324,265 - -0.4 324,265 - -1.4 324,269 + -1.9 324,269 + -0.1 324,269 + -2.3 324,269 + +0.2 324,269 + -1.0 324,269 + +0.5 324,314 + -1.1 324,314 + -0.9 324,314 + -1.2 324,314 + -0.8 324,314 + -0.8 324,315 - -1.6 324,315 - -0.9 324,315 - -1.3 324,315 - +0.5 324,315 - +0.4 324,369 + -2.4 324,508 + LRK53_RS01320 0.35 -1.6 324,508 + LRK53_RS01320 0.35 +0.6 324,508 + LRK53_RS01320 0.35 +1.2 324,508 + LRK53_RS01320 0.35 -1.5 324,508 + LRK53_RS01320 0.35 -3.8 324,509 - LRK53_RS01320 0.35 -0.5 324,509 - LRK53_RS01320 0.35 +0.2 324,509 - LRK53_RS01320 0.35 +0.2 324,509 - LRK53_RS01320 0.35 -1.2 324,509 - LRK53_RS01320 0.35 -1.5 324,509 - LRK53_RS01320 0.35 +0.5 324,509 - LRK53_RS01320 0.35 -2.6 324,509 - LRK53_RS01320 0.35 -1.0 324,647 + -1.4 325,170 - LRK53_RS01325 0.13 -1.3 325,170 - LRK53_RS01325 0.13 -0.6 325,170 - LRK53_RS01325 0.13 +0.5 325,170 - LRK53_RS01325 0.13 -0.1 325,299 - LRK53_RS01325 0.18 -2.6 325,504 + LRK53_RS01325 0.26 -0.4 325,504 + LRK53_RS01325 0.26 +0.5 325,504 + LRK53_RS01325 0.26 +0.1 325,504 + LRK53_RS01325 0.26 +0.1 325,504 + LRK53_RS01325 0.26 -2.6 325,505 - LRK53_RS01325 0.26 -0.4 325,505 - LRK53_RS01325 0.26 -1.1 325,570 + LRK53_RS01325 0.28 -0.1 325,570 + LRK53_RS01325 0.28 +0.0
Or see this region's nucleotide sequence