Experiment: Psabiae_ML3b with MT80
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS33715 and QEN71_RS33720 are separated by 453 nucleotides QEN71_RS33720 and QEN71_RS33725 are separated by 92 nucleotides QEN71_RS33725 and QEN71_RS33730 are separated by 129 nucleotides
QEN71_RS33715: QEN71_RS33715 - LysR family transcriptional regulator, at 886,112 to 887,053
_RS33715
QEN71_RS33720: QEN71_RS33720 - hypothetical protein, at 887,507 to 887,770
_RS33720
QEN71_RS33725: QEN71_RS33725 - N-acetyl-gamma-glutamyl-phosphate reductase, at 887,863 to 888,786
_RS33725
QEN71_RS33730: QEN71_RS33730 - LysR family transcriptional regulator, at 888,916 to 889,800
_RS33730
Position (kb) 887
888
889 Strain fitness (log2 ratio) -2
-1
0
1 at 887.201 kb on - strand at 887.326 kb on + strand at 887.347 kb on + strand at 887.383 kb on + strand at 887.421 kb on + strand at 887.443 kb on + strand at 887.499 kb on + strand at 887.499 kb on + strand at 887.499 kb on + strand at 887.768 kb on + strand at 888.268 kb on + strand, within QEN71_RS33725 at 888.268 kb on + strand, within QEN71_RS33725 at 888.268 kb on + strand, within QEN71_RS33725 at 888.269 kb on - strand, within QEN71_RS33725 at 888.383 kb on - strand, within QEN71_RS33725 at 888.509 kb on + strand, within QEN71_RS33725 at 888.837 kb on - strand at 888.837 kb on - strand at 889.464 kb on + strand, within QEN71_RS33730 at 889.465 kb on - strand, within QEN71_RS33730 at 889.589 kb on - strand, within QEN71_RS33730 at 889.767 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Psabiae_ML3b with MT80 remove 887,201 - +0.8 887,326 + +0.0 887,347 + +0.4 887,383 + -0.1 887,421 + -0.5 887,443 + -1.4 887,499 + -0.7 887,499 + -0.4 887,499 + +0.9 887,768 + +0.7 888,268 + QEN71_RS33725 0.44 -0.4 888,268 + QEN71_RS33725 0.44 +0.4 888,268 + QEN71_RS33725 0.44 -0.3 888,269 - QEN71_RS33725 0.44 -1.9 888,383 - QEN71_RS33725 0.56 +0.3 888,509 + QEN71_RS33725 0.70 -1.4 888,837 - +0.6 888,837 - -0.4 889,464 + QEN71_RS33730 0.62 +0.2 889,465 - QEN71_RS33730 0.62 +0.8 889,589 - QEN71_RS33730 0.76 -0.5 889,767 - -0.6
Or see this region's nucleotide sequence