Experiment: Psabiae_ML3b with MT80
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS31350 and QEN71_RS31355 are separated by 38 nucleotides QEN71_RS31355 and QEN71_RS31360 are separated by 48 nucleotides QEN71_RS31360 and QEN71_RS31365 are separated by 150 nucleotides
QEN71_RS31350: QEN71_RS31350 - acetolactate synthase large subunit, at 380,944 to 382,494
_RS31350
QEN71_RS31355: QEN71_RS31355 - phosphate ABC transporter substrate-binding protein, at 382,533 to 383,426
_RS31355
QEN71_RS31360: QEN71_RS31360 - MFS transporter, at 383,475 to 384,776
_RS31360
QEN71_RS31365: QEN71_RS31365 - MFS transporter, at 384,927 to 386,192
_RS31365
Position (kb) 383
384
385 Strain fitness (log2 ratio) -2
-1
0
1
2 at 382.492 kb on + strand at 382.510 kb on - strand at 382.816 kb on - strand, within QEN71_RS31355 at 382.816 kb on - strand, within QEN71_RS31355 at 382.930 kb on - strand, within QEN71_RS31355 at 383.407 kb on + strand at 383.408 kb on - strand at 383.730 kb on + strand, within QEN71_RS31360 at 383.730 kb on + strand, within QEN71_RS31360 at 383.856 kb on + strand, within QEN71_RS31360 at 383.856 kb on + strand, within QEN71_RS31360 at 383.857 kb on - strand, within QEN71_RS31360 at 383.857 kb on - strand, within QEN71_RS31360 at 383.862 kb on + strand, within QEN71_RS31360 at 384.175 kb on - strand, within QEN71_RS31360 at 384.180 kb on + strand, within QEN71_RS31360 at 384.181 kb on - strand, within QEN71_RS31360 at 384.193 kb on - strand, within QEN71_RS31360 at 384.193 kb on - strand, within QEN71_RS31360 at 384.216 kb on + strand, within QEN71_RS31360 at 384.417 kb on + strand, within QEN71_RS31360 at 384.457 kb on + strand, within QEN71_RS31360 at 384.630 kb on + strand, within QEN71_RS31360 at 384.631 kb on - strand, within QEN71_RS31360 at 384.996 kb on + strand at 384.996 kb on + strand at 385.083 kb on + strand, within QEN71_RS31365 at 385.084 kb on - strand, within QEN71_RS31365 at 385.482 kb on + strand, within QEN71_RS31365 at 385.482 kb on + strand, within QEN71_RS31365 at 385.524 kb on + strand, within QEN71_RS31365 at 385.546 kb on - strand, within QEN71_RS31365 at 385.546 kb on - strand, within QEN71_RS31365
Per-strain Table
Position Strand Gene LocusTag Fraction Psabiae_ML3b with MT80 remove 382,492 + -0.0 382,510 - -0.5 382,816 - QEN71_RS31355 0.32 -1.6 382,816 - QEN71_RS31355 0.32 -0.7 382,930 - QEN71_RS31355 0.44 +0.4 383,407 + -0.5 383,408 - +0.1 383,730 + QEN71_RS31360 0.20 +0.3 383,730 + QEN71_RS31360 0.20 -1.0 383,856 + QEN71_RS31360 0.29 +0.4 383,856 + QEN71_RS31360 0.29 +0.3 383,857 - QEN71_RS31360 0.29 -0.1 383,857 - QEN71_RS31360 0.29 +1.9 383,862 + QEN71_RS31360 0.30 -0.9 384,175 - QEN71_RS31360 0.54 -0.1 384,180 + QEN71_RS31360 0.54 +1.7 384,181 - QEN71_RS31360 0.54 +0.4 384,193 - QEN71_RS31360 0.55 -1.6 384,193 - QEN71_RS31360 0.55 -0.7 384,216 + QEN71_RS31360 0.57 -0.4 384,417 + QEN71_RS31360 0.72 +0.6 384,457 + QEN71_RS31360 0.75 -0.2 384,630 + QEN71_RS31360 0.89 +0.9 384,631 - QEN71_RS31360 0.89 +0.1 384,996 + +1.2 384,996 + +1.2 385,083 + QEN71_RS31365 0.12 -1.0 385,084 - QEN71_RS31365 0.12 -0.7 385,482 + QEN71_RS31365 0.44 -2.3 385,482 + QEN71_RS31365 0.44 -0.4 385,524 + QEN71_RS31365 0.47 +0.0 385,546 - QEN71_RS31365 0.49 +1.4 385,546 - QEN71_RS31365 0.49 -0.5
Or see this region's nucleotide sequence