Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS30525

Experiment: Psabiae_ML3b with MT80

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS30520 and QEN71_RS30525 are separated by 96 nucleotidesQEN71_RS30525 and QEN71_RS30530 are separated by 71 nucleotides QEN71_RS30520: QEN71_RS30520 - porin, at 186,117 to 187,241 _RS30520 QEN71_RS30525: QEN71_RS30525 - nitronate monooxygenase, at 187,338 to 188,288 _RS30525 QEN71_RS30530: QEN71_RS30530 - MFS transporter, at 188,360 to 189,697 _RS30530 Position (kb) 187 188 189Strain fitness (log2 ratio) -2 -1 0 1 2at 186.373 kb on - strand, within QEN71_RS30520at 186.393 kb on - strand, within QEN71_RS30520at 186.439 kb on + strand, within QEN71_RS30520at 186.439 kb on + strand, within QEN71_RS30520at 186.439 kb on + strand, within QEN71_RS30520at 186.440 kb on - strand, within QEN71_RS30520at 186.451 kb on + strand, within QEN71_RS30520at 186.452 kb on - strand, within QEN71_RS30520at 186.460 kb on + strand, within QEN71_RS30520at 186.460 kb on + strand, within QEN71_RS30520at 186.461 kb on - strand, within QEN71_RS30520at 186.461 kb on - strand, within QEN71_RS30520at 186.517 kb on + strand, within QEN71_RS30520at 186.518 kb on - strand, within QEN71_RS30520at 186.523 kb on + strand, within QEN71_RS30520at 186.523 kb on + strand, within QEN71_RS30520at 186.523 kb on + strand, within QEN71_RS30520at 186.523 kb on + strand, within QEN71_RS30520at 186.524 kb on - strand, within QEN71_RS30520at 186.524 kb on - strand, within QEN71_RS30520at 186.524 kb on - strand, within QEN71_RS30520at 186.524 kb on - strand, within QEN71_RS30520at 186.524 kb on - strand, within QEN71_RS30520at 186.524 kb on - strand, within QEN71_RS30520at 186.524 kb on - strand, within QEN71_RS30520at 186.526 kb on + strand, within QEN71_RS30520at 186.556 kb on + strand, within QEN71_RS30520at 186.556 kb on + strand, within QEN71_RS30520at 186.557 kb on - strand, within QEN71_RS30520at 186.557 kb on - strand, within QEN71_RS30520at 186.557 kb on - strand, within QEN71_RS30520at 186.557 kb on - strand, within QEN71_RS30520at 186.557 kb on - strand, within QEN71_RS30520at 186.636 kb on + strand, within QEN71_RS30520at 186.636 kb on + strand, within QEN71_RS30520at 186.637 kb on - strand, within QEN71_RS30520at 186.649 kb on + strand, within QEN71_RS30520at 186.649 kb on + strand, within QEN71_RS30520at 186.649 kb on + strand, within QEN71_RS30520at 186.649 kb on + strand, within QEN71_RS30520at 186.650 kb on - strand, within QEN71_RS30520at 186.668 kb on - strand, within QEN71_RS30520at 186.668 kb on - strand, within QEN71_RS30520at 186.712 kb on + strand, within QEN71_RS30520at 186.712 kb on + strand, within QEN71_RS30520at 186.751 kb on + strand, within QEN71_RS30520at 186.784 kb on + strand, within QEN71_RS30520at 186.785 kb on - strand, within QEN71_RS30520at 186.785 kb on - strand, within QEN71_RS30520at 186.838 kb on + strand, within QEN71_RS30520at 186.838 kb on + strand, within QEN71_RS30520at 186.868 kb on + strand, within QEN71_RS30520at 186.869 kb on - strand, within QEN71_RS30520at 186.869 kb on - strand, within QEN71_RS30520at 186.869 kb on - strand, within QEN71_RS30520at 186.895 kb on + strand, within QEN71_RS30520at 186.895 kb on + strand, within QEN71_RS30520at 186.895 kb on + strand, within QEN71_RS30520at 186.916 kb on + strand, within QEN71_RS30520at 186.916 kb on + strand, within QEN71_RS30520at 186.916 kb on + strand, within QEN71_RS30520at 186.917 kb on - strand, within QEN71_RS30520at 186.917 kb on - strand, within QEN71_RS30520at 186.917 kb on - strand, within QEN71_RS30520at 186.917 kb on - strand, within QEN71_RS30520at 187.234 kb on + strandat 187.234 kb on + strandat 187.234 kb on + strandat 187.235 kb on - strandat 187.517 kb on - strand, within QEN71_RS30525at 187.654 kb on + strand, within QEN71_RS30525at 187.654 kb on + strand, within QEN71_RS30525at 187.654 kb on + strand, within QEN71_RS30525at 187.655 kb on - strand, within QEN71_RS30525at 187.655 kb on - strand, within QEN71_RS30525at 188.062 kb on + strand, within QEN71_RS30525at 188.143 kb on + strand, within QEN71_RS30525at 188.144 kb on - strand, within QEN71_RS30525at 188.249 kb on - strandat 188.256 kb on - strandat 188.578 kb on - strand, within QEN71_RS30530at 188.578 kb on - strand, within QEN71_RS30530at 188.660 kb on + strand, within QEN71_RS30530at 188.811 kb on + strand, within QEN71_RS30530at 188.812 kb on - strand, within QEN71_RS30530at 188.812 kb on - strand, within QEN71_RS30530at 188.895 kb on + strand, within QEN71_RS30530at 188.896 kb on - strand, within QEN71_RS30530at 189.076 kb on - strand, within QEN71_RS30530at 189.267 kb on + strand, within QEN71_RS30530at 189.276 kb on + strand, within QEN71_RS30530at 189.277 kb on - strand, within QEN71_RS30530

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Per-strain Table

Position Strand Gene LocusTag Fraction Psabiae_ML3b with MT80
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186,373 - QEN71_RS30520 0.23 -0.5
186,393 - QEN71_RS30520 0.25 -1.0
186,439 + QEN71_RS30520 0.29 +0.8
186,439 + QEN71_RS30520 0.29 -1.3
186,439 + QEN71_RS30520 0.29 -0.5
186,440 - QEN71_RS30520 0.29 +0.1
186,451 + QEN71_RS30520 0.30 -0.1
186,452 - QEN71_RS30520 0.30 +0.1
186,460 + QEN71_RS30520 0.30 +0.4
186,460 + QEN71_RS30520 0.30 +0.4
186,461 - QEN71_RS30520 0.31 -0.1
186,461 - QEN71_RS30520 0.31 -0.6
186,517 + QEN71_RS30520 0.36 +0.3
186,518 - QEN71_RS30520 0.36 -0.5
186,523 + QEN71_RS30520 0.36 -1.9
186,523 + QEN71_RS30520 0.36 +1.3
186,523 + QEN71_RS30520 0.36 +0.0
186,523 + QEN71_RS30520 0.36 -0.5
186,524 - QEN71_RS30520 0.36 +0.1
186,524 - QEN71_RS30520 0.36 +0.1
186,524 - QEN71_RS30520 0.36 +0.1
186,524 - QEN71_RS30520 0.36 +0.3
186,524 - QEN71_RS30520 0.36 -0.3
186,524 - QEN71_RS30520 0.36 -0.1
186,524 - QEN71_RS30520 0.36 +0.5
186,526 + QEN71_RS30520 0.36 -0.1
186,556 + QEN71_RS30520 0.39 +0.4
186,556 + QEN71_RS30520 0.39 -0.4
186,557 - QEN71_RS30520 0.39 -0.0
186,557 - QEN71_RS30520 0.39 +1.3
186,557 - QEN71_RS30520 0.39 -1.2
186,557 - QEN71_RS30520 0.39 -0.4
186,557 - QEN71_RS30520 0.39 -0.2
186,636 + QEN71_RS30520 0.46 +0.2
186,636 + QEN71_RS30520 0.46 -0.7
186,637 - QEN71_RS30520 0.46 -0.8
186,649 + QEN71_RS30520 0.47 +0.3
186,649 + QEN71_RS30520 0.47 +0.2
186,649 + QEN71_RS30520 0.47 -0.3
186,649 + QEN71_RS30520 0.47 +1.2
186,650 - QEN71_RS30520 0.47 -0.7
186,668 - QEN71_RS30520 0.49 +0.4
186,668 - QEN71_RS30520 0.49 +0.4
186,712 + QEN71_RS30520 0.53 +0.4
186,712 + QEN71_RS30520 0.53 +1.1
186,751 + QEN71_RS30520 0.56 -1.1
186,784 + QEN71_RS30520 0.59 -0.1
186,785 - QEN71_RS30520 0.59 +1.8
186,785 - QEN71_RS30520 0.59 -1.3
186,838 + QEN71_RS30520 0.64 -0.5
186,838 + QEN71_RS30520 0.64 +0.5
186,868 + QEN71_RS30520 0.67 -0.3
186,869 - QEN71_RS30520 0.67 +0.8
186,869 - QEN71_RS30520 0.67 -1.8
186,869 - QEN71_RS30520 0.67 -0.8
186,895 + QEN71_RS30520 0.69 +0.8
186,895 + QEN71_RS30520 0.69 +1.8
186,895 + QEN71_RS30520 0.69 -0.2
186,916 + QEN71_RS30520 0.71 -2.3
186,916 + QEN71_RS30520 0.71 +0.4
186,916 + QEN71_RS30520 0.71 -1.2
186,917 - QEN71_RS30520 0.71 -0.7
186,917 - QEN71_RS30520 0.71 +2.1
186,917 - QEN71_RS30520 0.71 +0.5
186,917 - QEN71_RS30520 0.71 -0.2
187,234 + -1.3
187,234 + +0.8
187,234 + -0.1
187,235 - +0.2
187,517 - QEN71_RS30525 0.19 -0.2
187,654 + QEN71_RS30525 0.33 -1.0
187,654 + QEN71_RS30525 0.33 +0.1
187,654 + QEN71_RS30525 0.33 +0.3
187,655 - QEN71_RS30525 0.33 -0.5
187,655 - QEN71_RS30525 0.33 +0.9
188,062 + QEN71_RS30525 0.76 -0.3
188,143 + QEN71_RS30525 0.85 +2.0
188,144 - QEN71_RS30525 0.85 +0.1
188,249 - -0.0
188,256 - -0.2
188,578 - QEN71_RS30530 0.16 -1.6
188,578 - QEN71_RS30530 0.16 -0.3
188,660 + QEN71_RS30530 0.22 -0.5
188,811 + QEN71_RS30530 0.34 -0.6
188,812 - QEN71_RS30530 0.34 -1.2
188,812 - QEN71_RS30530 0.34 +0.6
188,895 + QEN71_RS30530 0.40 +0.3
188,896 - QEN71_RS30530 0.40 +1.2
189,076 - QEN71_RS30530 0.54 -0.7
189,267 + QEN71_RS30530 0.68 -0.7
189,276 + QEN71_RS30530 0.68 -0.2
189,277 - QEN71_RS30530 0.69 +0.5

Or see this region's nucleotide sequence