Experiment: Psabiae_ML3b with MT80
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS19175 and QEN71_RS19180 overlap by 4 nucleotides QEN71_RS19180 and QEN71_RS19185 are separated by 683 nucleotides
QEN71_RS19175: QEN71_RS19175 - glycosyltransferase, at 4,265,557 to 4,266,558
_RS19175
QEN71_RS19180: QEN71_RS19180 - DUF2795 domain-containing protein, at 4,266,555 to 4,266,803
_RS19180
QEN71_RS19185: QEN71_RS19185 - CheR family methyltransferase, at 4,267,487 to 4,271,641
_RS19185
Position (kb) 4266
4267 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4265.875 kb on + strand, within QEN71_RS19175 at 4266.243 kb on + strand, within QEN71_RS19175 at 4266.266 kb on + strand, within QEN71_RS19175 at 4266.266 kb on + strand, within QEN71_RS19175 at 4266.471 kb on + strand at 4266.471 kb on + strand at 4266.472 kb on - strand at 4266.569 kb on + strand at 4266.570 kb on - strand at 4266.607 kb on + strand, within QEN71_RS19180 at 4266.607 kb on + strand, within QEN71_RS19180 at 4266.608 kb on - strand, within QEN71_RS19180 at 4266.608 kb on - strand, within QEN71_RS19180 at 4266.608 kb on - strand, within QEN71_RS19180 at 4266.608 kb on - strand, within QEN71_RS19180 at 4266.613 kb on + strand, within QEN71_RS19180 at 4266.613 kb on + strand, within QEN71_RS19180 at 4266.613 kb on + strand, within QEN71_RS19180 at 4266.613 kb on + strand, within QEN71_RS19180 at 4266.614 kb on - strand, within QEN71_RS19180 at 4266.614 kb on - strand, within QEN71_RS19180 at 4266.614 kb on - strand, within QEN71_RS19180 at 4266.803 kb on + strand at 4266.803 kb on + strand at 4266.803 kb on + strand at 4266.803 kb on + strand at 4266.803 kb on + strand at 4266.803 kb on + strand at 4266.803 kb on + strand at 4266.803 kb on + strand at 4266.803 kb on + strand at 4266.803 kb on + strand at 4266.803 kb on + strand at 4266.803 kb on + strand at 4266.803 kb on + strand at 4266.804 kb on - strand at 4266.804 kb on - strand at 4266.804 kb on - strand at 4266.804 kb on - strand at 4266.804 kb on - strand at 4266.804 kb on - strand at 4266.804 kb on - strand at 4266.804 kb on - strand at 4266.830 kb on + strand at 4266.916 kb on - strand at 4266.950 kb on + strand at 4267.004 kb on - strand at 4267.034 kb on + strand at 4267.034 kb on + strand at 4267.034 kb on + strand at 4267.034 kb on + strand at 4267.060 kb on - strand at 4267.060 kb on - strand at 4267.161 kb on - strand at 4267.431 kb on - strand at 4267.431 kb on - strand at 4267.675 kb on + strand at 4267.676 kb on - strand at 4267.676 kb on - strand at 4267.676 kb on - strand at 4267.760 kb on + strand at 4267.760 kb on + strand at 4267.761 kb on - strand at 4267.761 kb on - strand at 4267.761 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Psabiae_ML3b with MT80 remove 4,265,875 + QEN71_RS19175 0.32 +0.5 4,266,243 + QEN71_RS19175 0.68 -1.0 4,266,266 + QEN71_RS19175 0.71 +1.5 4,266,266 + QEN71_RS19175 0.71 +0.3 4,266,471 + +0.8 4,266,471 + -0.3 4,266,472 - -1.3 4,266,569 + +0.2 4,266,570 - +0.5 4,266,607 + QEN71_RS19180 0.21 -0.3 4,266,607 + QEN71_RS19180 0.21 +0.9 4,266,608 - QEN71_RS19180 0.21 -0.2 4,266,608 - QEN71_RS19180 0.21 +2.0 4,266,608 - QEN71_RS19180 0.21 +0.8 4,266,608 - QEN71_RS19180 0.21 +0.9 4,266,613 + QEN71_RS19180 0.23 +1.3 4,266,613 + QEN71_RS19180 0.23 +0.5 4,266,613 + QEN71_RS19180 0.23 -0.2 4,266,613 + QEN71_RS19180 0.23 +1.6 4,266,614 - QEN71_RS19180 0.24 -0.9 4,266,614 - QEN71_RS19180 0.24 -0.2 4,266,614 - QEN71_RS19180 0.24 +1.5 4,266,803 + +0.7 4,266,803 + +0.6 4,266,803 + -1.4 4,266,803 + -0.7 4,266,803 + +0.1 4,266,803 + +0.1 4,266,803 + -0.9 4,266,803 + +0.7 4,266,803 + +0.6 4,266,803 + +0.5 4,266,803 + -0.4 4,266,803 + +0.8 4,266,803 + +0.5 4,266,804 - +0.4 4,266,804 - +0.1 4,266,804 - +0.4 4,266,804 - -0.5 4,266,804 - +1.2 4,266,804 - +0.2 4,266,804 - -0.4 4,266,804 - -0.3 4,266,830 + -1.0 4,266,916 - +0.8 4,266,950 + -0.4 4,267,004 - +0.1 4,267,034 + -0.1 4,267,034 + -1.9 4,267,034 + -2.1 4,267,034 + -0.4 4,267,060 - -1.1 4,267,060 - +0.3 4,267,161 - -0.9 4,267,431 - +0.2 4,267,431 - +0.1 4,267,675 + -0.0 4,267,676 - -0.1 4,267,676 - -0.5 4,267,676 - +0.1 4,267,760 + +0.1 4,267,760 + -0.3 4,267,761 - -0.0 4,267,761 - +0.2 4,267,761 - -0.5
Or see this region's nucleotide sequence