Experiment: Psabiae_ML3b with MT80
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS03965 and QEN71_RS03970 are separated by 83 nucleotides QEN71_RS03970 and QEN71_RS03975 are separated by 146 nucleotides QEN71_RS03975 and QEN71_RS03980 overlap by 4 nucleotides
QEN71_RS03965: QEN71_RS03965 - MFS transporter, at 877,309 to 878,610
_RS03965
QEN71_RS03970: QEN71_RS03970 - tetratricopeptide repeat protein, at 878,694 to 880,541
_RS03970
QEN71_RS03975: QEN71_RS03975 - metalloregulator ArsR/SmtB family transcription factor, at 880,688 to 881,032
_RS03975
QEN71_RS03980: QEN71_RS03980 - cation diffusion facilitator family transporter, at 881,029 to 882,126
_RS03980
Position (kb) 878
879
880
881 Strain fitness (log2 ratio) -2
-1
0
1
2 at 877.735 kb on + strand, within QEN71_RS03965 at 877.735 kb on + strand, within QEN71_RS03965 at 877.735 kb on + strand, within QEN71_RS03965 at 877.735 kb on + strand, within QEN71_RS03965 at 877.736 kb on - strand, within QEN71_RS03965 at 877.736 kb on - strand, within QEN71_RS03965 at 877.736 kb on - strand, within QEN71_RS03965 at 877.736 kb on - strand, within QEN71_RS03965 at 877.736 kb on - strand, within QEN71_RS03965 at 877.736 kb on - strand, within QEN71_RS03965 at 877.774 kb on + strand, within QEN71_RS03965 at 877.774 kb on + strand, within QEN71_RS03965 at 877.774 kb on + strand, within QEN71_RS03965 at 877.774 kb on + strand, within QEN71_RS03965 at 877.774 kb on + strand, within QEN71_RS03965 at 877.774 kb on + strand, within QEN71_RS03965 at 877.775 kb on - strand, within QEN71_RS03965 at 877.775 kb on - strand, within QEN71_RS03965 at 877.775 kb on - strand, within QEN71_RS03965 at 877.775 kb on - strand, within QEN71_RS03965 at 878.049 kb on + strand, within QEN71_RS03965 at 878.049 kb on + strand, within QEN71_RS03965 at 878.049 kb on + strand, within QEN71_RS03965 at 878.077 kb on + strand, within QEN71_RS03965 at 878.077 kb on + strand, within QEN71_RS03965 at 878.077 kb on + strand, within QEN71_RS03965 at 878.077 kb on + strand, within QEN71_RS03965 at 878.077 kb on + strand, within QEN71_RS03965 at 878.077 kb on + strand, within QEN71_RS03965 at 878.078 kb on - strand, within QEN71_RS03965 at 878.078 kb on - strand, within QEN71_RS03965 at 878.078 kb on - strand, within QEN71_RS03965 at 878.078 kb on - strand, within QEN71_RS03965 at 878.078 kb on - strand, within QEN71_RS03965 at 878.092 kb on + strand, within QEN71_RS03965 at 878.092 kb on + strand, within QEN71_RS03965 at 878.093 kb on - strand, within QEN71_RS03965 at 878.093 kb on - strand, within QEN71_RS03965 at 878.093 kb on - strand, within QEN71_RS03965 at 878.093 kb on - strand, within QEN71_RS03965 at 878.139 kb on + strand, within QEN71_RS03965 at 878.139 kb on + strand, within QEN71_RS03965 at 878.140 kb on - strand, within QEN71_RS03965 at 878.140 kb on - strand, within QEN71_RS03965 at 878.269 kb on + strand, within QEN71_RS03965 at 878.269 kb on + strand, within QEN71_RS03965 at 878.269 kb on + strand, within QEN71_RS03965 at 878.270 kb on - strand, within QEN71_RS03965 at 878.270 kb on - strand, within QEN71_RS03965 at 878.347 kb on + strand, within QEN71_RS03965 at 878.348 kb on - strand, within QEN71_RS03965 at 878.356 kb on + strand, within QEN71_RS03965 at 878.356 kb on + strand, within QEN71_RS03965 at 878.357 kb on - strand, within QEN71_RS03965 at 878.357 kb on - strand, within QEN71_RS03965 at 878.431 kb on + strand, within QEN71_RS03965 at 878.431 kb on + strand, within QEN71_RS03965 at 878.432 kb on - strand, within QEN71_RS03965 at 878.432 kb on - strand, within QEN71_RS03965 at 878.432 kb on - strand, within QEN71_RS03965 at 878.479 kb on + strand, within QEN71_RS03965 at 878.479 kb on + strand, within QEN71_RS03965 at 878.479 kb on + strand, within QEN71_RS03965 at 878.479 kb on + strand, within QEN71_RS03965 at 878.479 kb on + strand, within QEN71_RS03965 at 878.479 kb on + strand, within QEN71_RS03965 at 878.480 kb on - strand at 878.480 kb on - strand at 878.480 kb on - strand at 878.480 kb on - strand at 878.480 kb on - strand at 878.570 kb on - strand at 878.570 kb on - strand at 878.885 kb on + strand, within QEN71_RS03970 at 878.886 kb on - strand, within QEN71_RS03970 at 879.205 kb on + strand, within QEN71_RS03970 at 879.553 kb on + strand, within QEN71_RS03970 at 879.553 kb on + strand, within QEN71_RS03970 at 879.554 kb on - strand, within QEN71_RS03970 at 879.611 kb on + strand, within QEN71_RS03970 at 879.611 kb on + strand, within QEN71_RS03970 at 879.612 kb on - strand, within QEN71_RS03970 at 879.711 kb on + strand, within QEN71_RS03970 at 880.205 kb on - strand, within QEN71_RS03970 at 880.222 kb on + strand, within QEN71_RS03970 at 880.222 kb on + strand, within QEN71_RS03970 at 880.223 kb on - strand, within QEN71_RS03970 at 880.223 kb on - strand, within QEN71_RS03970 at 880.515 kb on - strand at 880.630 kb on + strand at 880.631 kb on - strand at 880.635 kb on + strand at 880.636 kb on - strand at 880.636 kb on - strand at 880.651 kb on + strand at 880.652 kb on - strand at 880.655 kb on + strand at 880.655 kb on + strand at 880.656 kb on - strand at 880.925 kb on + strand, within QEN71_RS03975 at 880.926 kb on - strand, within QEN71_RS03975 at 880.926 kb on - strand, within QEN71_RS03975 at 880.926 kb on - strand, within QEN71_RS03975 at 880.926 kb on - strand, within QEN71_RS03975 at 880.926 kb on - strand, within QEN71_RS03975 at 881.035 kb on + strand at 881.035 kb on + strand at 881.035 kb on + strand at 881.035 kb on + strand at 881.035 kb on + strand at 881.036 kb on - strand at 881.036 kb on - strand at 881.036 kb on - strand at 881.036 kb on - strand at 881.036 kb on - strand at 881.036 kb on - strand at 881.036 kb on - strand at 881.036 kb on - strand at 881.036 kb on - strand at 881.036 kb on - strand at 881.036 kb on - strand at 881.061 kb on + strand at 881.318 kb on - strand, within QEN71_RS03980 at 881.318 kb on - strand, within QEN71_RS03980 at 881.318 kb on - strand, within QEN71_RS03980 at 881.440 kb on + strand, within QEN71_RS03980 at 881.440 kb on + strand, within QEN71_RS03980 at 881.441 kb on - strand, within QEN71_RS03980 at 881.466 kb on + strand, within QEN71_RS03980 at 881.467 kb on - strand, within QEN71_RS03980
Per-strain Table
Position Strand Gene LocusTag Fraction Psabiae_ML3b with MT80 remove 877,735 + QEN71_RS03965 0.33 -0.2 877,735 + QEN71_RS03965 0.33 -0.4 877,735 + QEN71_RS03965 0.33 +0.8 877,735 + QEN71_RS03965 0.33 -1.4 877,736 - QEN71_RS03965 0.33 -0.4 877,736 - QEN71_RS03965 0.33 -0.2 877,736 - QEN71_RS03965 0.33 -0.4 877,736 - QEN71_RS03965 0.33 -0.4 877,736 - QEN71_RS03965 0.33 -0.2 877,736 - QEN71_RS03965 0.33 +1.5 877,774 + QEN71_RS03965 0.36 +1.6 877,774 + QEN71_RS03965 0.36 +0.6 877,774 + QEN71_RS03965 0.36 +0.6 877,774 + QEN71_RS03965 0.36 +0.3 877,774 + QEN71_RS03965 0.36 -0.1 877,774 + QEN71_RS03965 0.36 -2.1 877,775 - QEN71_RS03965 0.36 +1.5 877,775 - QEN71_RS03965 0.36 -0.1 877,775 - QEN71_RS03965 0.36 -0.5 877,775 - QEN71_RS03965 0.36 +1.2 878,049 + QEN71_RS03965 0.57 -1.2 878,049 + QEN71_RS03965 0.57 -0.4 878,049 + QEN71_RS03965 0.57 +0.1 878,077 + QEN71_RS03965 0.59 -0.8 878,077 + QEN71_RS03965 0.59 -0.1 878,077 + QEN71_RS03965 0.59 -0.0 878,077 + QEN71_RS03965 0.59 -1.1 878,077 + QEN71_RS03965 0.59 +0.8 878,077 + QEN71_RS03965 0.59 -0.5 878,078 - QEN71_RS03965 0.59 +0.2 878,078 - QEN71_RS03965 0.59 -1.1 878,078 - QEN71_RS03965 0.59 +1.5 878,078 - QEN71_RS03965 0.59 -0.3 878,078 - QEN71_RS03965 0.59 +0.7 878,092 + QEN71_RS03965 0.60 +0.2 878,092 + QEN71_RS03965 0.60 -0.3 878,093 - QEN71_RS03965 0.60 -0.6 878,093 - QEN71_RS03965 0.60 -0.3 878,093 - QEN71_RS03965 0.60 -1.5 878,093 - QEN71_RS03965 0.60 +1.1 878,139 + QEN71_RS03965 0.64 +0.5 878,139 + QEN71_RS03965 0.64 +0.5 878,140 - QEN71_RS03965 0.64 +0.2 878,140 - QEN71_RS03965 0.64 +0.1 878,269 + QEN71_RS03965 0.74 +0.5 878,269 + QEN71_RS03965 0.74 +0.9 878,269 + QEN71_RS03965 0.74 +0.6 878,270 - QEN71_RS03965 0.74 +0.8 878,270 - QEN71_RS03965 0.74 -0.6 878,347 + QEN71_RS03965 0.80 +1.3 878,348 - QEN71_RS03965 0.80 -0.8 878,356 + QEN71_RS03965 0.80 +0.7 878,356 + QEN71_RS03965 0.80 -0.5 878,357 - QEN71_RS03965 0.80 -0.2 878,357 - QEN71_RS03965 0.80 +1.0 878,431 + QEN71_RS03965 0.86 +0.1 878,431 + QEN71_RS03965 0.86 +0.4 878,432 - QEN71_RS03965 0.86 -1.0 878,432 - QEN71_RS03965 0.86 +0.0 878,432 - QEN71_RS03965 0.86 -0.3 878,479 + QEN71_RS03965 0.90 +1.1 878,479 + QEN71_RS03965 0.90 +1.8 878,479 + QEN71_RS03965 0.90 -1.2 878,479 + QEN71_RS03965 0.90 -1.1 878,479 + QEN71_RS03965 0.90 +1.2 878,479 + QEN71_RS03965 0.90 +0.0 878,480 - -1.8 878,480 - +0.0 878,480 - -0.0 878,480 - +0.8 878,480 - -0.0 878,570 - -0.4 878,570 - -0.5 878,885 + QEN71_RS03970 0.10 +2.1 878,886 - QEN71_RS03970 0.10 -1.2 879,205 + QEN71_RS03970 0.28 -1.0 879,553 + QEN71_RS03970 0.46 +0.5 879,553 + QEN71_RS03970 0.46 +1.5 879,554 - QEN71_RS03970 0.47 -2.3 879,611 + QEN71_RS03970 0.50 -1.5 879,611 + QEN71_RS03970 0.50 -1.2 879,612 - QEN71_RS03970 0.50 +0.5 879,711 + QEN71_RS03970 0.55 -1.5 880,205 - QEN71_RS03970 0.82 -0.1 880,222 + QEN71_RS03970 0.83 -1.2 880,222 + QEN71_RS03970 0.83 +0.2 880,223 - QEN71_RS03970 0.83 +0.1 880,223 - QEN71_RS03970 0.83 -0.2 880,515 - +0.7 880,630 + -0.1 880,631 - -0.1 880,635 + +0.3 880,636 - +0.0 880,636 - -0.3 880,651 + +0.5 880,652 - -1.8 880,655 + -0.3 880,655 + +0.4 880,656 - +0.2 880,925 + QEN71_RS03975 0.69 -0.5 880,926 - QEN71_RS03975 0.69 -1.4 880,926 - QEN71_RS03975 0.69 -1.9 880,926 - QEN71_RS03975 0.69 -0.8 880,926 - QEN71_RS03975 0.69 -1.0 880,926 - QEN71_RS03975 0.69 -1.8 881,035 + +0.2 881,035 + +0.2 881,035 + +1.0 881,035 + -1.5 881,035 + -0.4 881,036 - -0.9 881,036 - +2.3 881,036 - +1.5 881,036 - -1.5 881,036 - +0.2 881,036 - +1.8 881,036 - +0.6 881,036 - +1.1 881,036 - -0.4 881,036 - +1.1 881,036 - -0.2 881,061 + +0.7 881,318 - QEN71_RS03980 0.26 +0.6 881,318 - QEN71_RS03980 0.26 -0.1 881,318 - QEN71_RS03980 0.26 +0.6 881,440 + QEN71_RS03980 0.37 +0.5 881,440 + QEN71_RS03980 0.37 +0.1 881,441 - QEN71_RS03980 0.38 -1.2 881,466 + QEN71_RS03980 0.40 -0.9 881,467 - QEN71_RS03980 0.40 -0.9
Or see this region's nucleotide sequence