Experiment: Psabiae_ML3b with MT80
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS02715 and QEN71_RS02720 are separated by 75 nucleotides QEN71_RS02720 and QEN71_RS02725 are separated by 110 nucleotides
QEN71_RS02715: QEN71_RS02715 - tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA, at 609,189 to 610,049
_RS02715
QEN71_RS02720: QEN71_RS02720 - thioredoxin, at 610,125 to 610,973
_RS02720
QEN71_RS02725: QEN71_RS02725 - pirin family protein, at 611,084 to 611,965
_RS02725
Position (kb) 610
611 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 609.158 kb on - strand at 609.158 kb on - strand at 609.181 kb on + strand at 609.181 kb on + strand at 609.181 kb on + strand at 609.181 kb on + strand at 609.181 kb on + strand at 609.181 kb on + strand at 609.181 kb on + strand at 609.182 kb on - strand at 609.182 kb on - strand at 609.182 kb on - strand at 609.182 kb on - strand at 609.182 kb on - strand at 609.182 kb on - strand at 609.182 kb on - strand at 609.182 kb on - strand at 609.182 kb on - strand at 609.182 kb on - strand at 609.182 kb on - strand at 609.182 kb on - strand at 609.182 kb on - strand at 609.224 kb on + strand at 609.224 kb on + strand at 609.224 kb on + strand at 609.224 kb on + strand at 609.225 kb on - strand at 609.225 kb on - strand at 609.225 kb on - strand at 609.225 kb on - strand at 609.225 kb on - strand at 609.225 kb on - strand at 609.228 kb on - strand at 609.289 kb on + strand, within QEN71_RS02715 at 609.289 kb on + strand, within QEN71_RS02715 at 609.289 kb on + strand, within QEN71_RS02715 at 609.291 kb on + strand, within QEN71_RS02715 at 609.291 kb on + strand, within QEN71_RS02715 at 609.291 kb on + strand, within QEN71_RS02715 at 609.291 kb on + strand, within QEN71_RS02715 at 609.291 kb on + strand, within QEN71_RS02715 at 609.292 kb on - strand, within QEN71_RS02715 at 609.440 kb on + strand, within QEN71_RS02715 at 609.440 kb on + strand, within QEN71_RS02715 at 609.441 kb on - strand, within QEN71_RS02715 at 609.441 kb on - strand, within QEN71_RS02715 at 609.441 kb on - strand, within QEN71_RS02715 at 609.441 kb on - strand, within QEN71_RS02715 at 609.441 kb on - strand, within QEN71_RS02715 at 609.441 kb on - strand, within QEN71_RS02715 at 609.474 kb on + strand, within QEN71_RS02715 at 609.474 kb on + strand, within QEN71_RS02715 at 609.474 kb on + strand, within QEN71_RS02715 at 609.474 kb on + strand, within QEN71_RS02715 at 609.474 kb on + strand, within QEN71_RS02715 at 609.475 kb on - strand, within QEN71_RS02715 at 609.475 kb on - strand, within QEN71_RS02715 at 609.475 kb on - strand, within QEN71_RS02715 at 609.475 kb on - strand, within QEN71_RS02715 at 609.632 kb on + strand, within QEN71_RS02715 at 609.632 kb on + strand, within QEN71_RS02715 at 609.632 kb on + strand, within QEN71_RS02715 at 609.723 kb on - strand, within QEN71_RS02715 at 609.846 kb on + strand, within QEN71_RS02715 at 609.846 kb on + strand, within QEN71_RS02715 at 609.846 kb on + strand, within QEN71_RS02715 at 609.867 kb on + strand, within QEN71_RS02715 at 610.021 kb on + strand at 610.021 kb on + strand at 610.021 kb on + strand at 610.021 kb on + strand at 610.021 kb on + strand at 610.022 kb on - strand at 610.022 kb on - strand at 610.022 kb on - strand at 610.022 kb on - strand at 610.022 kb on - strand at 610.022 kb on - strand at 610.022 kb on - strand at 610.022 kb on - strand at 610.022 kb on - strand at 610.022 kb on - strand at 610.067 kb on + strand at 610.068 kb on - strand at 610.126 kb on + strand at 610.126 kb on + strand at 610.126 kb on + strand at 610.126 kb on + strand at 610.126 kb on + strand at 610.126 kb on + strand at 610.126 kb on + strand at 610.126 kb on + strand at 610.126 kb on + strand at 610.127 kb on - strand at 610.127 kb on - strand at 610.127 kb on - strand at 610.127 kb on - strand at 610.127 kb on - strand at 610.127 kb on - strand at 610.127 kb on - strand at 610.127 kb on - strand at 610.127 kb on - strand at 610.127 kb on - strand at 610.223 kb on + strand, within QEN71_RS02720 at 610.223 kb on + strand, within QEN71_RS02720 at 610.224 kb on - strand, within QEN71_RS02720 at 610.285 kb on + strand, within QEN71_RS02720 at 610.285 kb on + strand, within QEN71_RS02720 at 610.286 kb on - strand, within QEN71_RS02720 at 610.286 kb on - strand, within QEN71_RS02720 at 610.286 kb on - strand, within QEN71_RS02720 at 610.432 kb on + strand, within QEN71_RS02720 at 610.432 kb on + strand, within QEN71_RS02720 at 610.432 kb on + strand, within QEN71_RS02720 at 610.433 kb on - strand, within QEN71_RS02720 at 610.433 kb on - strand, within QEN71_RS02720 at 610.561 kb on + strand, within QEN71_RS02720 at 610.588 kb on + strand, within QEN71_RS02720 at 610.589 kb on - strand, within QEN71_RS02720 at 610.589 kb on - strand, within QEN71_RS02720 at 610.589 kb on - strand, within QEN71_RS02720 at 610.589 kb on - strand, within QEN71_RS02720 at 610.589 kb on - strand, within QEN71_RS02720 at 610.589 kb on - strand, within QEN71_RS02720 at 610.834 kb on + strand, within QEN71_RS02720 at 610.834 kb on + strand, within QEN71_RS02720 at 610.835 kb on - strand, within QEN71_RS02720 at 610.835 kb on - strand, within QEN71_RS02720 at 610.911 kb on + strand at 610.911 kb on + strand at 610.977 kb on + strand at 610.977 kb on + strand at 610.977 kb on + strand at 610.977 kb on + strand at 610.977 kb on + strand at 610.977 kb on + strand at 610.978 kb on - strand at 610.978 kb on - strand at 610.978 kb on - strand at 610.978 kb on - strand at 610.978 kb on - strand at 610.978 kb on - strand at 610.996 kb on - strand at 611.001 kb on + strand at 611.001 kb on + strand at 611.001 kb on + strand at 611.001 kb on + strand at 611.001 kb on + strand at 611.001 kb on + strand at 611.002 kb on - strand at 611.002 kb on - strand at 611.002 kb on - strand at 611.002 kb on - strand at 611.004 kb on + strand at 611.004 kb on + strand at 611.004 kb on + strand at 611.004 kb on + strand at 611.004 kb on + strand at 611.005 kb on - strand at 611.005 kb on - strand at 611.005 kb on - strand at 611.005 kb on - strand at 611.005 kb on - strand at 611.005 kb on - strand at 611.005 kb on - strand at 611.005 kb on - strand at 611.005 kb on - strand at 611.005 kb on - strand at 611.367 kb on + strand, within QEN71_RS02725 at 611.367 kb on + strand, within QEN71_RS02725 at 611.367 kb on + strand, within QEN71_RS02725 at 611.368 kb on - strand, within QEN71_RS02725 at 611.368 kb on - strand, within QEN71_RS02725 at 611.368 kb on - strand, within QEN71_RS02725 at 611.368 kb on - strand, within QEN71_RS02725 at 611.436 kb on + strand, within QEN71_RS02725 at 611.436 kb on + strand, within QEN71_RS02725 at 611.436 kb on + strand, within QEN71_RS02725 at 611.436 kb on + strand, within QEN71_RS02725 at 611.437 kb on - strand, within QEN71_RS02725 at 611.437 kb on - strand, within QEN71_RS02725 at 611.437 kb on - strand, within QEN71_RS02725 at 611.437 kb on - strand, within QEN71_RS02725 at 611.437 kb on - strand, within QEN71_RS02725 at 611.437 kb on - strand, within QEN71_RS02725 at 611.437 kb on - strand, within QEN71_RS02725 at 611.763 kb on + strand, within QEN71_RS02725 at 611.763 kb on + strand, within QEN71_RS02725 at 611.763 kb on + strand, within QEN71_RS02725 at 611.763 kb on + strand, within QEN71_RS02725 at 611.763 kb on + strand, within QEN71_RS02725 at 611.764 kb on - strand, within QEN71_RS02725 at 611.764 kb on - strand, within QEN71_RS02725 at 611.764 kb on - strand, within QEN71_RS02725 at 611.764 kb on - strand, within QEN71_RS02725 at 611.764 kb on - strand, within QEN71_RS02725 at 611.764 kb on - strand, within QEN71_RS02725 at 611.764 kb on - strand, within QEN71_RS02725 at 611.764 kb on - strand, within QEN71_RS02725 at 611.764 kb on - strand, within QEN71_RS02725 at 611.764 kb on - strand, within QEN71_RS02725 at 611.785 kb on + strand, within QEN71_RS02725 at 611.786 kb on - strand, within QEN71_RS02725 at 611.786 kb on - strand, within QEN71_RS02725
Per-strain Table
Position Strand Gene LocusTag Fraction Psabiae_ML3b with MT80 remove 609,158 - -0.3 609,158 - -2.7 609,181 + -0.5 609,181 + +0.3 609,181 + +0.2 609,181 + -0.7 609,181 + +1.0 609,181 + -0.6 609,181 + +0.5 609,182 - +0.0 609,182 - +1.4 609,182 - +0.4 609,182 - -0.5 609,182 - -0.1 609,182 - -0.5 609,182 - +0.6 609,182 - -0.3 609,182 - +1.6 609,182 - +0.1 609,182 - +1.1 609,182 - +0.5 609,182 - -0.7 609,224 + -1.1 609,224 + +0.0 609,224 + -0.5 609,224 + -1.1 609,225 - -2.2 609,225 - +0.3 609,225 - +0.4 609,225 - +0.0 609,225 - +0.2 609,225 - -0.5 609,228 - +0.1 609,289 + QEN71_RS02715 0.12 +0.4 609,289 + QEN71_RS02715 0.12 -0.1 609,289 + QEN71_RS02715 0.12 +0.2 609,291 + QEN71_RS02715 0.12 -0.6 609,291 + QEN71_RS02715 0.12 -0.7 609,291 + QEN71_RS02715 0.12 -0.8 609,291 + QEN71_RS02715 0.12 -1.0 609,291 + QEN71_RS02715 0.12 -0.9 609,292 - QEN71_RS02715 0.12 -0.2 609,440 + QEN71_RS02715 0.29 -1.1 609,440 + QEN71_RS02715 0.29 +1.0 609,441 - QEN71_RS02715 0.29 -1.1 609,441 - QEN71_RS02715 0.29 +0.9 609,441 - QEN71_RS02715 0.29 -0.0 609,441 - QEN71_RS02715 0.29 -0.7 609,441 - QEN71_RS02715 0.29 -0.9 609,441 - QEN71_RS02715 0.29 -0.3 609,474 + QEN71_RS02715 0.33 -0.5 609,474 + QEN71_RS02715 0.33 +1.9 609,474 + QEN71_RS02715 0.33 -0.3 609,474 + QEN71_RS02715 0.33 +0.9 609,474 + QEN71_RS02715 0.33 -0.4 609,475 - QEN71_RS02715 0.33 +0.7 609,475 - QEN71_RS02715 0.33 +0.4 609,475 - QEN71_RS02715 0.33 -1.6 609,475 - QEN71_RS02715 0.33 +0.4 609,632 + QEN71_RS02715 0.51 +0.1 609,632 + QEN71_RS02715 0.51 -3.0 609,632 + QEN71_RS02715 0.51 +0.2 609,723 - QEN71_RS02715 0.62 +0.1 609,846 + QEN71_RS02715 0.76 -1.3 609,846 + QEN71_RS02715 0.76 +1.2 609,846 + QEN71_RS02715 0.76 -0.1 609,867 + QEN71_RS02715 0.79 +0.2 610,021 + +0.4 610,021 + -0.4 610,021 + -0.5 610,021 + -0.6 610,021 + -0.5 610,022 - +0.5 610,022 - +0.0 610,022 - -0.1 610,022 - +1.1 610,022 - +0.1 610,022 - +0.9 610,022 - +0.5 610,022 - +0.5 610,022 - +0.5 610,022 - -2.1 610,067 + +0.5 610,068 - +0.3 610,126 + +1.9 610,126 + -0.5 610,126 + -0.4 610,126 + +0.3 610,126 + -1.5 610,126 + +1.3 610,126 + -0.4 610,126 + +0.2 610,126 + +0.3 610,127 - +0.7 610,127 - +0.1 610,127 - -0.2 610,127 - -0.3 610,127 - -0.1 610,127 - -0.4 610,127 - -0.3 610,127 - -1.0 610,127 - -0.1 610,127 - +0.2 610,223 + QEN71_RS02720 0.12 +0.3 610,223 + QEN71_RS02720 0.12 -0.6 610,224 - QEN71_RS02720 0.12 -1.5 610,285 + QEN71_RS02720 0.19 +0.0 610,285 + QEN71_RS02720 0.19 -0.2 610,286 - QEN71_RS02720 0.19 -0.3 610,286 - QEN71_RS02720 0.19 +0.4 610,286 - QEN71_RS02720 0.19 +0.4 610,432 + QEN71_RS02720 0.36 -1.0 610,432 + QEN71_RS02720 0.36 +0.9 610,432 + QEN71_RS02720 0.36 -0.5 610,433 - QEN71_RS02720 0.36 +0.2 610,433 - QEN71_RS02720 0.36 -1.0 610,561 + QEN71_RS02720 0.51 +0.1 610,588 + QEN71_RS02720 0.55 +1.7 610,589 - QEN71_RS02720 0.55 +1.1 610,589 - QEN71_RS02720 0.55 -2.3 610,589 - QEN71_RS02720 0.55 +0.3 610,589 - QEN71_RS02720 0.55 +0.2 610,589 - QEN71_RS02720 0.55 -0.6 610,589 - QEN71_RS02720 0.55 +1.0 610,834 + QEN71_RS02720 0.84 +0.2 610,834 + QEN71_RS02720 0.84 +1.4 610,835 - QEN71_RS02720 0.84 -0.7 610,835 - QEN71_RS02720 0.84 +0.4 610,911 + +0.2 610,911 + +0.8 610,977 + -0.4 610,977 + +0.9 610,977 + -0.1 610,977 + +0.9 610,977 + -0.4 610,977 + -0.2 610,978 - -0.0 610,978 - +0.1 610,978 - -0.4 610,978 - -0.5 610,978 - -0.7 610,978 - -1.0 610,996 - -0.2 611,001 + -0.4 611,001 + -0.1 611,001 + +0.7 611,001 + -0.0 611,001 + -1.1 611,001 + -1.4 611,002 - -0.7 611,002 - -0.4 611,002 - -0.5 611,002 - +1.4 611,004 + -0.7 611,004 + +0.2 611,004 + +0.4 611,004 + +0.9 611,004 + +1.4 611,005 - -0.3 611,005 - -0.1 611,005 - -0.5 611,005 - -0.6 611,005 - -0.1 611,005 - -0.4 611,005 - +1.6 611,005 - -1.1 611,005 - -0.1 611,005 - -1.6 611,367 + QEN71_RS02725 0.32 +0.4 611,367 + QEN71_RS02725 0.32 +0.0 611,367 + QEN71_RS02725 0.32 +0.5 611,368 - QEN71_RS02725 0.32 +0.2 611,368 - QEN71_RS02725 0.32 -0.3 611,368 - QEN71_RS02725 0.32 -1.0 611,368 - QEN71_RS02725 0.32 -0.1 611,436 + QEN71_RS02725 0.40 -1.5 611,436 + QEN71_RS02725 0.40 -0.7 611,436 + QEN71_RS02725 0.40 +0.9 611,436 + QEN71_RS02725 0.40 -2.0 611,437 - QEN71_RS02725 0.40 -0.2 611,437 - QEN71_RS02725 0.40 +0.9 611,437 - QEN71_RS02725 0.40 -0.4 611,437 - QEN71_RS02725 0.40 +0.5 611,437 - QEN71_RS02725 0.40 -0.1 611,437 - QEN71_RS02725 0.40 +0.0 611,437 - QEN71_RS02725 0.40 -0.1 611,763 + QEN71_RS02725 0.77 +0.9 611,763 + QEN71_RS02725 0.77 +0.6 611,763 + QEN71_RS02725 0.77 -0.1 611,763 + QEN71_RS02725 0.77 +0.9 611,763 + QEN71_RS02725 0.77 +0.1 611,764 - QEN71_RS02725 0.77 +1.9 611,764 - QEN71_RS02725 0.77 -0.5 611,764 - QEN71_RS02725 0.77 -0.5 611,764 - QEN71_RS02725 0.77 -1.1 611,764 - QEN71_RS02725 0.77 -0.1 611,764 - QEN71_RS02725 0.77 -1.2 611,764 - QEN71_RS02725 0.77 -0.3 611,764 - QEN71_RS02725 0.77 -0.1 611,764 - QEN71_RS02725 0.77 +0.5 611,764 - QEN71_RS02725 0.77 +0.7 611,785 + QEN71_RS02725 0.79 +0.4 611,786 - QEN71_RS02725 0.80 +0.1 611,786 - QEN71_RS02725 0.80 +0.1
Or see this region's nucleotide sequence