Experiment: Psabiae_ML3b with MT80
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS02700 and QEN71_RS02705 are separated by 121 nucleotides QEN71_RS02705 and QEN71_RS02710 are separated by 176 nucleotides QEN71_RS02710 and QEN71_RS02715 are separated by 169 nucleotides
QEN71_RS02700: QEN71_RS02700 - DUF72 domain-containing protein, at 605,786 to 606,868
_RS02700
QEN71_RS02705: QEN71_RS02705 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 606,990 to 608,204
_RS02705
QEN71_RS02710: QEN71_RS02710 - pyridoxamine 5'-phosphate oxidase, at 608,381 to 609,019
_RS02710
QEN71_RS02715: QEN71_RS02715 - tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA, at 609,189 to 610,049
_RS02715
Position (kb) 606
607
608
609 Strain fitness (log2 ratio) -2
-1
0
1
2 at 606.009 kb on + strand, within QEN71_RS02700 at 606.010 kb on - strand, within QEN71_RS02700 at 606.010 kb on - strand, within QEN71_RS02700 at 606.010 kb on - strand, within QEN71_RS02700 at 606.010 kb on - strand, within QEN71_RS02700 at 606.010 kb on - strand, within QEN71_RS02700 at 606.031 kb on - strand, within QEN71_RS02700 at 606.031 kb on - strand, within QEN71_RS02700 at 606.031 kb on - strand, within QEN71_RS02700 at 606.031 kb on - strand, within QEN71_RS02700 at 606.153 kb on + strand, within QEN71_RS02700 at 606.154 kb on - strand, within QEN71_RS02700 at 606.228 kb on + strand, within QEN71_RS02700 at 606.229 kb on - strand, within QEN71_RS02700 at 606.229 kb on - strand, within QEN71_RS02700 at 606.229 kb on - strand, within QEN71_RS02700 at 606.229 kb on - strand, within QEN71_RS02700 at 606.528 kb on + strand, within QEN71_RS02700 at 606.529 kb on - strand, within QEN71_RS02700 at 606.538 kb on - strand, within QEN71_RS02700 at 606.538 kb on - strand, within QEN71_RS02700 at 606.538 kb on - strand, within QEN71_RS02700 at 606.538 kb on - strand, within QEN71_RS02700 at 606.538 kb on - strand, within QEN71_RS02700 at 606.561 kb on + strand, within QEN71_RS02700 at 606.561 kb on + strand, within QEN71_RS02700 at 606.562 kb on - strand, within QEN71_RS02700 at 606.562 kb on - strand, within QEN71_RS02700 at 606.648 kb on + strand, within QEN71_RS02700 at 606.649 kb on - strand, within QEN71_RS02700 at 606.649 kb on - strand, within QEN71_RS02700 at 606.660 kb on + strand, within QEN71_RS02700 at 606.700 kb on + strand, within QEN71_RS02700 at 606.700 kb on + strand, within QEN71_RS02700 at 606.700 kb on + strand, within QEN71_RS02700 at 606.701 kb on - strand, within QEN71_RS02700 at 606.991 kb on + strand at 607.006 kb on + strand at 607.006 kb on + strand at 607.006 kb on + strand at 607.006 kb on + strand at 607.006 kb on + strand at 607.007 kb on - strand at 607.007 kb on - strand at 607.007 kb on - strand at 607.007 kb on - strand at 607.062 kb on + strand at 607.062 kb on + strand at 607.063 kb on - strand at 607.063 kb on - strand at 607.072 kb on + strand at 607.072 kb on + strand at 607.073 kb on - strand at 607.073 kb on - strand at 607.073 kb on - strand at 607.073 kb on - strand at 607.073 kb on - strand at 607.073 kb on - strand at 607.103 kb on - strand at 607.103 kb on - strand at 607.103 kb on - strand at 607.120 kb on + strand, within QEN71_RS02705 at 607.120 kb on + strand, within QEN71_RS02705 at 607.120 kb on + strand, within QEN71_RS02705 at 607.121 kb on - strand, within QEN71_RS02705 at 607.121 kb on - strand, within QEN71_RS02705 at 607.121 kb on - strand, within QEN71_RS02705 at 607.121 kb on - strand, within QEN71_RS02705 at 607.121 kb on - strand, within QEN71_RS02705 at 607.134 kb on - strand, within QEN71_RS02705 at 607.219 kb on + strand, within QEN71_RS02705 at 607.219 kb on + strand, within QEN71_RS02705 at 607.220 kb on - strand, within QEN71_RS02705 at 607.220 kb on - strand, within QEN71_RS02705 at 607.220 kb on - strand, within QEN71_RS02705 at 607.321 kb on + strand, within QEN71_RS02705 at 607.321 kb on + strand, within QEN71_RS02705 at 607.321 kb on + strand, within QEN71_RS02705 at 607.322 kb on - strand, within QEN71_RS02705 at 607.322 kb on - strand, within QEN71_RS02705 at 607.322 kb on - strand, within QEN71_RS02705 at 607.322 kb on - strand, within QEN71_RS02705 at 607.322 kb on - strand, within QEN71_RS02705 at 607.441 kb on + strand, within QEN71_RS02705 at 607.441 kb on + strand, within QEN71_RS02705 at 607.441 kb on + strand, within QEN71_RS02705 at 607.442 kb on - strand, within QEN71_RS02705 at 607.523 kb on - strand, within QEN71_RS02705 at 607.780 kb on + strand, within QEN71_RS02705 at 607.781 kb on - strand, within QEN71_RS02705 at 607.792 kb on + strand, within QEN71_RS02705 at 607.792 kb on + strand, within QEN71_RS02705 at 607.792 kb on + strand, within QEN71_RS02705 at 607.793 kb on - strand, within QEN71_RS02705 at 607.793 kb on - strand, within QEN71_RS02705 at 607.793 kb on - strand, within QEN71_RS02705 at 607.793 kb on - strand, within QEN71_RS02705 at 607.793 kb on - strand, within QEN71_RS02705 at 607.822 kb on + strand, within QEN71_RS02705 at 607.822 kb on + strand, within QEN71_RS02705 at 607.823 kb on - strand, within QEN71_RS02705 at 607.823 kb on - strand, within QEN71_RS02705 at 607.823 kb on - strand, within QEN71_RS02705 at 607.823 kb on - strand, within QEN71_RS02705 at 607.843 kb on + strand, within QEN71_RS02705 at 607.843 kb on + strand, within QEN71_RS02705 at 607.844 kb on - strand, within QEN71_RS02705 at 607.844 kb on - strand, within QEN71_RS02705 at 607.844 kb on - strand, within QEN71_RS02705 at 607.844 kb on - strand, within QEN71_RS02705 at 607.844 kb on - strand, within QEN71_RS02705 at 607.844 kb on - strand, within QEN71_RS02705 at 607.850 kb on - strand, within QEN71_RS02705 at 607.891 kb on + strand, within QEN71_RS02705 at 607.948 kb on + strand, within QEN71_RS02705 at 607.948 kb on + strand, within QEN71_RS02705 at 607.949 kb on - strand, within QEN71_RS02705 at 607.955 kb on + strand, within QEN71_RS02705 at 608.005 kb on + strand, within QEN71_RS02705 at 608.006 kb on - strand, within QEN71_RS02705 at 608.147 kb on + strand at 608.148 kb on - strand at 608.163 kb on + strand at 608.164 kb on - strand at 608.164 kb on - strand at 608.173 kb on - strand at 608.173 kb on - strand at 608.173 kb on - strand at 609.020 kb on - strand at 609.020 kb on - strand at 609.020 kb on - strand at 609.026 kb on - strand at 609.026 kb on - strand at 609.026 kb on - strand at 609.037 kb on - strand at 609.037 kb on - strand at 609.037 kb on - strand at 609.052 kb on + strand at 609.052 kb on + strand at 609.053 kb on - strand at 609.053 kb on - strand at 609.053 kb on - strand at 609.158 kb on - strand at 609.158 kb on - strand at 609.181 kb on + strand at 609.181 kb on + strand at 609.181 kb on + strand at 609.181 kb on + strand at 609.181 kb on + strand at 609.181 kb on + strand at 609.181 kb on + strand at 609.182 kb on - strand at 609.182 kb on - strand at 609.182 kb on - strand at 609.182 kb on - strand at 609.182 kb on - strand at 609.182 kb on - strand at 609.182 kb on - strand at 609.182 kb on - strand at 609.182 kb on - strand at 609.182 kb on - strand at 609.182 kb on - strand at 609.182 kb on - strand at 609.182 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Psabiae_ML3b with MT80 remove 606,009 + QEN71_RS02700 0.21 +0.6 606,010 - QEN71_RS02700 0.21 -0.7 606,010 - QEN71_RS02700 0.21 -1.5 606,010 - QEN71_RS02700 0.21 +0.0 606,010 - QEN71_RS02700 0.21 -2.2 606,010 - QEN71_RS02700 0.21 -0.2 606,031 - QEN71_RS02700 0.23 -0.6 606,031 - QEN71_RS02700 0.23 -0.0 606,031 - QEN71_RS02700 0.23 -0.1 606,031 - QEN71_RS02700 0.23 -0.7 606,153 + QEN71_RS02700 0.34 +1.0 606,154 - QEN71_RS02700 0.34 -0.5 606,228 + QEN71_RS02700 0.41 +0.0 606,229 - QEN71_RS02700 0.41 +0.2 606,229 - QEN71_RS02700 0.41 -0.7 606,229 - QEN71_RS02700 0.41 -0.4 606,229 - QEN71_RS02700 0.41 -0.1 606,528 + QEN71_RS02700 0.69 -0.2 606,529 - QEN71_RS02700 0.69 -0.2 606,538 - QEN71_RS02700 0.69 +0.8 606,538 - QEN71_RS02700 0.69 +0.3 606,538 - QEN71_RS02700 0.69 -0.6 606,538 - QEN71_RS02700 0.69 +0.8 606,538 - QEN71_RS02700 0.69 +0.9 606,561 + QEN71_RS02700 0.72 +0.3 606,561 + QEN71_RS02700 0.72 -0.1 606,562 - QEN71_RS02700 0.72 -0.0 606,562 - QEN71_RS02700 0.72 -0.1 606,648 + QEN71_RS02700 0.80 +0.0 606,649 - QEN71_RS02700 0.80 -0.3 606,649 - QEN71_RS02700 0.80 +1.0 606,660 + QEN71_RS02700 0.81 -0.1 606,700 + QEN71_RS02700 0.84 -0.4 606,700 + QEN71_RS02700 0.84 -0.3 606,700 + QEN71_RS02700 0.84 +0.1 606,701 - QEN71_RS02700 0.84 -0.1 606,991 + -0.0 607,006 + -0.3 607,006 + -0.7 607,006 + +1.0 607,006 + +1.5 607,006 + +0.5 607,007 - +0.3 607,007 - +0.6 607,007 - +0.5 607,007 - -0.5 607,062 + +1.1 607,062 + -1.3 607,063 - -0.1 607,063 - -0.2 607,072 + -0.9 607,072 + +0.9 607,073 - +2.5 607,073 - +1.3 607,073 - +0.8 607,073 - +0.9 607,073 - +0.6 607,073 - -0.8 607,103 - +1.1 607,103 - -0.8 607,103 - -0.7 607,120 + QEN71_RS02705 0.11 +0.5 607,120 + QEN71_RS02705 0.11 +1.3 607,120 + QEN71_RS02705 0.11 -1.2 607,121 - QEN71_RS02705 0.11 +0.3 607,121 - QEN71_RS02705 0.11 +0.3 607,121 - QEN71_RS02705 0.11 +0.0 607,121 - QEN71_RS02705 0.11 -2.5 607,121 - QEN71_RS02705 0.11 -0.2 607,134 - QEN71_RS02705 0.12 -0.7 607,219 + QEN71_RS02705 0.19 -0.6 607,219 + QEN71_RS02705 0.19 -0.4 607,220 - QEN71_RS02705 0.19 -0.8 607,220 - QEN71_RS02705 0.19 -0.5 607,220 - QEN71_RS02705 0.19 +0.4 607,321 + QEN71_RS02705 0.27 -1.0 607,321 + QEN71_RS02705 0.27 +0.7 607,321 + QEN71_RS02705 0.27 +0.7 607,322 - QEN71_RS02705 0.27 -1.0 607,322 - QEN71_RS02705 0.27 -1.1 607,322 - QEN71_RS02705 0.27 -0.0 607,322 - QEN71_RS02705 0.27 -0.2 607,322 - QEN71_RS02705 0.27 -0.6 607,441 + QEN71_RS02705 0.37 -1.2 607,441 + QEN71_RS02705 0.37 -0.4 607,441 + QEN71_RS02705 0.37 +1.9 607,442 - QEN71_RS02705 0.37 -0.1 607,523 - QEN71_RS02705 0.44 -0.1 607,780 + QEN71_RS02705 0.65 -0.4 607,781 - QEN71_RS02705 0.65 +0.5 607,792 + QEN71_RS02705 0.66 -0.5 607,792 + QEN71_RS02705 0.66 -0.4 607,792 + QEN71_RS02705 0.66 -0.2 607,793 - QEN71_RS02705 0.66 -0.5 607,793 - QEN71_RS02705 0.66 -0.1 607,793 - QEN71_RS02705 0.66 -0.5 607,793 - QEN71_RS02705 0.66 +2.1 607,793 - QEN71_RS02705 0.66 -0.6 607,822 + QEN71_RS02705 0.68 -0.5 607,822 + QEN71_RS02705 0.68 -1.8 607,823 - QEN71_RS02705 0.69 +0.3 607,823 - QEN71_RS02705 0.69 -0.7 607,823 - QEN71_RS02705 0.69 -0.5 607,823 - QEN71_RS02705 0.69 -0.1 607,843 + QEN71_RS02705 0.70 -0.7 607,843 + QEN71_RS02705 0.70 +0.2 607,844 - QEN71_RS02705 0.70 +0.3 607,844 - QEN71_RS02705 0.70 -1.1 607,844 - QEN71_RS02705 0.70 -0.7 607,844 - QEN71_RS02705 0.70 -0.1 607,844 - QEN71_RS02705 0.70 -1.0 607,844 - QEN71_RS02705 0.70 +0.9 607,850 - QEN71_RS02705 0.71 -0.4 607,891 + QEN71_RS02705 0.74 +1.5 607,948 + QEN71_RS02705 0.79 -1.0 607,948 + QEN71_RS02705 0.79 -2.1 607,949 - QEN71_RS02705 0.79 +1.6 607,955 + QEN71_RS02705 0.79 -0.3 608,005 + QEN71_RS02705 0.84 -0.1 608,006 - QEN71_RS02705 0.84 +0.5 608,147 + -1.4 608,148 - -0.5 608,163 + +0.5 608,164 - -0.3 608,164 - +1.7 608,173 - -0.5 608,173 - -0.4 608,173 - -1.0 609,020 - +0.1 609,020 - +0.0 609,020 - +0.6 609,026 - -0.6 609,026 - -1.1 609,026 - -0.3 609,037 - -0.6 609,037 - -0.6 609,037 - +0.2 609,052 + +0.6 609,052 + +0.3 609,053 - +0.4 609,053 - +0.2 609,053 - -0.1 609,158 - -0.3 609,158 - -2.7 609,181 + -0.5 609,181 + +0.3 609,181 + +0.2 609,181 + -0.7 609,181 + +1.0 609,181 + -0.6 609,181 + +0.5 609,182 - +0.0 609,182 - +1.4 609,182 - +0.4 609,182 - -0.5 609,182 - -0.1 609,182 - -0.5 609,182 - +0.6 609,182 - -0.3 609,182 - +1.6 609,182 - +0.1 609,182 - +1.1 609,182 - +0.5 609,182 - -0.7
Or see this region's nucleotide sequence