Experiment: Psabiae_ML3b with MT80
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS00305 and QEN71_RS00310 are separated by 341 nucleotides QEN71_RS00310 and QEN71_RS00315 are separated by 34 nucleotides QEN71_RS00315 and QEN71_RS00320 are separated by 102 nucleotides
QEN71_RS00305: QEN71_RS00305 - acetylglutamate kinase, at 64,389 to 65,288
_RS00305
QEN71_RS00310: QEN71_RS00310 - cysteine-rich CWC family protein, at 65,630 to 65,869
_RS00310
QEN71_RS00315: QEN71_RS00315 - hypothetical protein, at 65,904 to 67,541
_RS00315
QEN71_RS00320: QEN71_RS00320 - ATP-binding protein, at 67,644 to 68,948
_RS00320
Position (kb) 65
66
67
68 Strain fitness (log2 ratio) -2
-1
0
1 at 65.216 kb on - strand at 65.332 kb on + strand at 65.333 kb on - strand at 65.353 kb on + strand at 65.353 kb on + strand at 65.353 kb on + strand at 65.354 kb on - strand at 65.354 kb on - strand at 65.471 kb on + strand at 65.471 kb on + strand at 65.495 kb on + strand at 65.495 kb on + strand at 65.495 kb on + strand at 65.495 kb on + strand at 65.495 kb on + strand at 65.495 kb on + strand at 65.495 kb on + strand at 65.495 kb on + strand at 65.495 kb on + strand at 65.496 kb on - strand at 65.496 kb on - strand at 65.496 kb on - strand at 65.496 kb on - strand at 65.496 kb on - strand at 65.496 kb on - strand at 65.496 kb on - strand at 65.496 kb on - strand at 65.524 kb on + strand at 65.524 kb on + strand at 65.525 kb on - strand at 65.548 kb on - strand at 65.905 kb on + strand at 65.905 kb on + strand at 65.906 kb on - strand at 65.906 kb on - strand at 65.993 kb on - strand at 66.010 kb on + strand at 66.011 kb on - strand at 66.125 kb on + strand, within QEN71_RS00315 at 66.126 kb on - strand, within QEN71_RS00315 at 66.126 kb on - strand, within QEN71_RS00315 at 66.151 kb on + strand, within QEN71_RS00315 at 66.151 kb on + strand, within QEN71_RS00315 at 66.151 kb on + strand, within QEN71_RS00315 at 66.151 kb on + strand, within QEN71_RS00315 at 66.151 kb on + strand, within QEN71_RS00315 at 66.151 kb on + strand, within QEN71_RS00315 at 66.152 kb on - strand, within QEN71_RS00315 at 66.152 kb on - strand, within QEN71_RS00315 at 66.152 kb on - strand, within QEN71_RS00315 at 66.152 kb on - strand, within QEN71_RS00315 at 66.152 kb on - strand, within QEN71_RS00315 at 66.200 kb on + strand, within QEN71_RS00315 at 66.201 kb on - strand, within QEN71_RS00315 at 66.259 kb on + strand, within QEN71_RS00315 at 66.259 kb on + strand, within QEN71_RS00315 at 66.259 kb on + strand, within QEN71_RS00315 at 66.259 kb on + strand, within QEN71_RS00315 at 66.260 kb on - strand, within QEN71_RS00315 at 66.260 kb on - strand, within QEN71_RS00315 at 66.260 kb on - strand, within QEN71_RS00315 at 66.260 kb on - strand, within QEN71_RS00315 at 66.290 kb on - strand, within QEN71_RS00315 at 66.298 kb on + strand, within QEN71_RS00315 at 66.298 kb on + strand, within QEN71_RS00315 at 66.298 kb on + strand, within QEN71_RS00315 at 66.298 kb on + strand, within QEN71_RS00315 at 66.299 kb on - strand, within QEN71_RS00315 at 66.299 kb on - strand, within QEN71_RS00315 at 66.299 kb on - strand, within QEN71_RS00315 at 66.299 kb on - strand, within QEN71_RS00315 at 66.299 kb on - strand, within QEN71_RS00315 at 66.407 kb on + strand, within QEN71_RS00315 at 66.407 kb on + strand, within QEN71_RS00315 at 66.407 kb on + strand, within QEN71_RS00315 at 66.407 kb on + strand, within QEN71_RS00315 at 66.408 kb on - strand, within QEN71_RS00315 at 66.408 kb on - strand, within QEN71_RS00315 at 66.408 kb on - strand, within QEN71_RS00315 at 66.408 kb on - strand, within QEN71_RS00315 at 66.408 kb on - strand, within QEN71_RS00315 at 66.436 kb on + strand, within QEN71_RS00315 at 66.436 kb on + strand, within QEN71_RS00315 at 66.437 kb on - strand, within QEN71_RS00315 at 66.437 kb on - strand, within QEN71_RS00315 at 66.437 kb on - strand, within QEN71_RS00315 at 66.437 kb on - strand, within QEN71_RS00315 at 66.437 kb on - strand, within QEN71_RS00315 at 66.562 kb on + strand, within QEN71_RS00315 at 66.562 kb on + strand, within QEN71_RS00315 at 66.562 kb on + strand, within QEN71_RS00315 at 66.563 kb on - strand, within QEN71_RS00315 at 66.563 kb on - strand, within QEN71_RS00315 at 66.664 kb on + strand, within QEN71_RS00315 at 66.665 kb on - strand, within QEN71_RS00315 at 66.665 kb on - strand, within QEN71_RS00315 at 66.832 kb on + strand, within QEN71_RS00315 at 66.832 kb on + strand, within QEN71_RS00315 at 66.832 kb on + strand, within QEN71_RS00315 at 66.832 kb on + strand, within QEN71_RS00315 at 66.832 kb on + strand, within QEN71_RS00315 at 66.833 kb on - strand, within QEN71_RS00315 at 66.833 kb on - strand, within QEN71_RS00315 at 66.833 kb on - strand, within QEN71_RS00315 at 66.833 kb on - strand, within QEN71_RS00315 at 66.996 kb on + strand, within QEN71_RS00315 at 66.996 kb on + strand, within QEN71_RS00315 at 66.996 kb on + strand, within QEN71_RS00315 at 66.996 kb on + strand, within QEN71_RS00315 at 66.997 kb on - strand, within QEN71_RS00315 at 66.997 kb on - strand, within QEN71_RS00315 at 67.222 kb on + strand, within QEN71_RS00315 at 67.223 kb on - strand, within QEN71_RS00315 at 67.223 kb on - strand, within QEN71_RS00315 at 67.535 kb on + strand at 67.535 kb on + strand at 67.535 kb on + strand at 67.535 kb on + strand at 67.535 kb on + strand at 67.536 kb on - strand at 67.536 kb on - strand at 67.536 kb on - strand at 67.564 kb on + strand at 67.564 kb on + strand at 67.564 kb on + strand at 67.564 kb on + strand at 67.564 kb on + strand at 67.564 kb on + strand at 67.565 kb on - strand at 67.565 kb on - strand at 67.569 kb on + strand at 67.570 kb on - strand at 67.570 kb on - strand at 67.577 kb on - strand at 67.577 kb on - strand at 67.577 kb on - strand at 67.586 kb on + strand at 67.586 kb on + strand at 67.586 kb on + strand at 67.586 kb on + strand at 67.586 kb on + strand at 67.586 kb on + strand at 67.586 kb on + strand at 67.586 kb on + strand at 67.586 kb on + strand at 67.586 kb on + strand at 67.586 kb on + strand at 67.586 kb on + strand at 67.586 kb on + strand at 67.586 kb on + strand at 67.587 kb on - strand at 67.587 kb on - strand at 67.587 kb on - strand at 67.588 kb on + strand at 67.588 kb on + strand at 67.588 kb on + strand at 67.588 kb on + strand at 67.588 kb on + strand at 67.588 kb on + strand at 67.588 kb on + strand at 67.588 kb on + strand at 67.588 kb on + strand at 67.588 kb on + strand at 67.588 kb on + strand at 67.588 kb on + strand at 67.588 kb on + strand at 67.588 kb on + strand at 67.588 kb on + strand at 67.589 kb on - strand at 67.589 kb on - strand at 67.589 kb on - strand at 67.589 kb on - strand at 67.654 kb on + strand at 68.097 kb on + strand, within QEN71_RS00320 at 68.097 kb on + strand, within QEN71_RS00320
Per-strain Table
Position Strand Gene LocusTag Fraction Psabiae_ML3b with MT80 remove 65,216 - -0.7 65,332 + -1.4 65,333 - +0.2 65,353 + -0.8 65,353 + -1.4 65,353 + -0.0 65,354 - -0.4 65,354 - +1.4 65,471 + +0.9 65,471 + +0.8 65,495 + +0.2 65,495 + -0.9 65,495 + +0.1 65,495 + -0.7 65,495 + +0.3 65,495 + -0.4 65,495 + -0.1 65,495 + +1.3 65,495 + -0.1 65,496 - -0.3 65,496 - -0.2 65,496 - +0.4 65,496 - -0.5 65,496 - +0.9 65,496 - -0.4 65,496 - -0.6 65,496 - -0.6 65,524 + +1.1 65,524 + -0.0 65,525 - +1.6 65,548 - +0.2 65,905 + -0.0 65,905 + -0.3 65,906 - -0.3 65,906 - +0.1 65,993 - -0.4 66,010 + +0.4 66,011 - +0.1 66,125 + QEN71_RS00315 0.13 -0.6 66,126 - QEN71_RS00315 0.14 -1.4 66,126 - QEN71_RS00315 0.14 -1.6 66,151 + QEN71_RS00315 0.15 +0.4 66,151 + QEN71_RS00315 0.15 -1.0 66,151 + QEN71_RS00315 0.15 +0.2 66,151 + QEN71_RS00315 0.15 -0.5 66,151 + QEN71_RS00315 0.15 +0.1 66,151 + QEN71_RS00315 0.15 -1.0 66,152 - QEN71_RS00315 0.15 +0.1 66,152 - QEN71_RS00315 0.15 -1.5 66,152 - QEN71_RS00315 0.15 +1.1 66,152 - QEN71_RS00315 0.15 -1.1 66,152 - QEN71_RS00315 0.15 -0.4 66,200 + QEN71_RS00315 0.18 +0.6 66,201 - QEN71_RS00315 0.18 -0.4 66,259 + QEN71_RS00315 0.22 +0.4 66,259 + QEN71_RS00315 0.22 -0.1 66,259 + QEN71_RS00315 0.22 -0.8 66,259 + QEN71_RS00315 0.22 -0.5 66,260 - QEN71_RS00315 0.22 -1.2 66,260 - QEN71_RS00315 0.22 -1.1 66,260 - QEN71_RS00315 0.22 -0.8 66,260 - QEN71_RS00315 0.22 -1.3 66,290 - QEN71_RS00315 0.24 +0.8 66,298 + QEN71_RS00315 0.24 +0.3 66,298 + QEN71_RS00315 0.24 +0.3 66,298 + QEN71_RS00315 0.24 -0.6 66,298 + QEN71_RS00315 0.24 +1.1 66,299 - QEN71_RS00315 0.24 +0.1 66,299 - QEN71_RS00315 0.24 +0.6 66,299 - QEN71_RS00315 0.24 +0.7 66,299 - QEN71_RS00315 0.24 +0.9 66,299 - QEN71_RS00315 0.24 -0.8 66,407 + QEN71_RS00315 0.31 +0.3 66,407 + QEN71_RS00315 0.31 -0.3 66,407 + QEN71_RS00315 0.31 +0.3 66,407 + QEN71_RS00315 0.31 -0.5 66,408 - QEN71_RS00315 0.31 -2.0 66,408 - QEN71_RS00315 0.31 +1.7 66,408 - QEN71_RS00315 0.31 +0.7 66,408 - QEN71_RS00315 0.31 -0.3 66,408 - QEN71_RS00315 0.31 -0.4 66,436 + QEN71_RS00315 0.32 +0.0 66,436 + QEN71_RS00315 0.32 -0.4 66,437 - QEN71_RS00315 0.33 +0.2 66,437 - QEN71_RS00315 0.33 +0.4 66,437 - QEN71_RS00315 0.33 +0.5 66,437 - QEN71_RS00315 0.33 +0.0 66,437 - QEN71_RS00315 0.33 -0.3 66,562 + QEN71_RS00315 0.40 -0.4 66,562 + QEN71_RS00315 0.40 -0.3 66,562 + QEN71_RS00315 0.40 +0.7 66,563 - QEN71_RS00315 0.40 -0.4 66,563 - QEN71_RS00315 0.40 -0.9 66,664 + QEN71_RS00315 0.46 -0.7 66,665 - QEN71_RS00315 0.46 +0.5 66,665 - QEN71_RS00315 0.46 +0.2 66,832 + QEN71_RS00315 0.57 -0.8 66,832 + QEN71_RS00315 0.57 +0.4 66,832 + QEN71_RS00315 0.57 +1.1 66,832 + QEN71_RS00315 0.57 +0.2 66,832 + QEN71_RS00315 0.57 -0.3 66,833 - QEN71_RS00315 0.57 +0.2 66,833 - QEN71_RS00315 0.57 +0.8 66,833 - QEN71_RS00315 0.57 -0.7 66,833 - QEN71_RS00315 0.57 -0.1 66,996 + QEN71_RS00315 0.67 -0.3 66,996 + QEN71_RS00315 0.67 -0.1 66,996 + QEN71_RS00315 0.67 -0.9 66,996 + QEN71_RS00315 0.67 -0.0 66,997 - QEN71_RS00315 0.67 -0.6 66,997 - QEN71_RS00315 0.67 -1.1 67,222 + QEN71_RS00315 0.80 -1.6 67,223 - QEN71_RS00315 0.81 -0.3 67,223 - QEN71_RS00315 0.81 +0.2 67,535 + +0.9 67,535 + -0.2 67,535 + +0.1 67,535 + -0.1 67,535 + +0.0 67,536 - +1.4 67,536 - -0.6 67,536 - -1.3 67,564 + -0.8 67,564 + -0.9 67,564 + -0.4 67,564 + +0.0 67,564 + +0.1 67,564 + +0.0 67,565 - -0.4 67,565 - +0.7 67,569 + -0.7 67,570 - +0.3 67,570 - -1.1 67,577 - -1.1 67,577 - -0.1 67,577 - +1.5 67,586 + -0.1 67,586 + -0.7 67,586 + -1.9 67,586 + +0.7 67,586 + +0.3 67,586 + -0.1 67,586 + +0.9 67,586 + +0.1 67,586 + +0.9 67,586 + -0.8 67,586 + -0.5 67,586 + -0.3 67,586 + -0.9 67,586 + -0.3 67,587 - -0.2 67,587 - -1.4 67,587 - -0.4 67,588 + -0.3 67,588 + -0.0 67,588 + -0.1 67,588 + -0.9 67,588 + -0.5 67,588 + +0.0 67,588 + +0.3 67,588 + -0.2 67,588 + +0.9 67,588 + -0.6 67,588 + +0.9 67,588 + +0.2 67,588 + -0.3 67,588 + +0.6 67,588 + -0.9 67,589 - -0.4 67,589 - -0.6 67,589 - -0.6 67,589 - -1.4 67,654 + -0.0 68,097 + QEN71_RS00320 0.35 +0.1 68,097 + QEN71_RS00320 0.35 -0.4
Or see this region's nucleotide sequence