Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03679

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 7
4,110,738	+		MIT1002_03678	0.40	-1.5
4,110,778	+		MIT1002_03678	0.43	+1.2
4,110,840	+		MIT1002_03678	0.48	+0.6
4,110,856	+		MIT1002_03678	0.50	+0.1
4,110,893	+		MIT1002_03678	0.53	+0.7
4,110,946	+		MIT1002_03678	0.57	-0.4
4,111,005	+		MIT1002_03678	0.62	-1.1
4,111,014	+		MIT1002_03678	0.63	+1.4
4,111,049	+		MIT1002_03678	0.65	+0.7
4,111,057	-		MIT1002_03678	0.66	+1.4
4,111,057	-		MIT1002_03678	0.66	-2.2
4,111,057	-		MIT1002_03678	0.66	+1.7
4,111,067	-		MIT1002_03678	0.67	-0.9
4,111,084	-		MIT1002_03678	0.68	+1.2
4,111,142	+		MIT1002_03678	0.73	+1.7
4,111,142	+		MIT1002_03678	0.73	-1.7
4,111,142	+		MIT1002_03678	0.73	-1.0
4,111,142	+		MIT1002_03678	0.73	+0.0
4,111,142	+		MIT1002_03678	0.73	-1.8
4,111,142	+		MIT1002_03678	0.73	-2.0
4,111,142	+		MIT1002_03678	0.73	-1.0
4,111,142	+		MIT1002_03678	0.73	-0.2
4,111,150	-		MIT1002_03678	0.74	+0.2
4,111,150	-		MIT1002_03678	0.74	+0.7
4,111,150	-		MIT1002_03678	0.74	+1.7
4,111,150	-		MIT1002_03678	0.74	+1.5
4,111,150	-		MIT1002_03678	0.74	+0.9
4,111,154	+		MIT1002_03678	0.74	-2.0
4,111,154	+		MIT1002_03678	0.74	-0.1
4,111,154	+		MIT1002_03678	0.74	+0.3
4,111,157	+		MIT1002_03678	0.74	-0.0
4,111,194	+		MIT1002_03678	0.77	+0.1
4,111,199	+		MIT1002_03678	0.78	+1.5
4,111,254	+		MIT1002_03678	0.82	-0.2
4,111,276	+		MIT1002_03678	0.84	-0.3
4,111,276	+		MIT1002_03678	0.84	+0.6
4,111,392	-				+0.2
4,111,424	+				+0.7
4,111,427	+				-1.4
4,111,441	-				+0.8
4,111,463	-				+0.3
4,111,482	-				-0.5
4,111,537	+				+1.8
4,111,545	-				-0.4
4,111,592	+				-0.7
4,111,606	-				+0.7
4,111,608	+				+1.3
4,111,616	-				-1.8
4,111,648	-				-0.7
4,111,778	-				-0.4
4,111,794	-		MIT1002_03679	0.10	-0.1
4,111,898	+		MIT1002_03679	0.19	+0.1
4,111,899	+		MIT1002_03679	0.19	+0.6
4,111,899	+		MIT1002_03679	0.19	-1.1
4,111,899	+		MIT1002_03679	0.19	+0.8
4,111,899	+		MIT1002_03679	0.19	+0.2
4,111,899	+		MIT1002_03679	0.19	+0.2
4,111,907	-		MIT1002_03679	0.19	+0.7
4,111,907	-		MIT1002_03679	0.19	+1.1
4,111,907	-		MIT1002_03679	0.19	-0.1
4,112,005	+		MIT1002_03679	0.27	+1.5
4,112,017	+		MIT1002_03679	0.28	-2.2
4,112,030	-		MIT1002_03679	0.29	+0.2
4,112,219	-		MIT1002_03679	0.44	-2.4
4,112,245	-		MIT1002_03679	0.47	+0.9
4,112,312	+		MIT1002_03679	0.52	-0.7
4,112,314	+		MIT1002_03679	0.52	+0.8
4,112,353	+		MIT1002_03679	0.55	-0.2
4,112,361	-		MIT1002_03679	0.56	-0.4
4,112,432	+		MIT1002_03679	0.62	+0.5
4,112,558	+		MIT1002_03679	0.72	-1.1
4,112,568	+		MIT1002_03679	0.73	-0.7
4,112,568	+		MIT1002_03679	0.73	+1.0
4,112,568	+		MIT1002_03679	0.73	-0.7
4,112,568	+		MIT1002_03679	0.73	-3.1
4,112,568	+		MIT1002_03679	0.73	+0.7
4,112,568	+		MIT1002_03679	0.73	-1.2
4,112,568	+		MIT1002_03679	0.73	+0.8
4,112,568	+		MIT1002_03679	0.73	+0.1
4,112,576	-		MIT1002_03679	0.73	-2.6
4,112,576	-		MIT1002_03679	0.73	+0.0
4,112,576	-		MIT1002_03679	0.73	+0.2
4,112,576	-		MIT1002_03679	0.73	-0.4
4,112,576	-		MIT1002_03679	0.73	-1.9
4,112,576	-		MIT1002_03679	0.73	-0.9
4,112,576	-		MIT1002_03679	0.73	+0.6
4,112,626	+		MIT1002_03679	0.77	-1.7
4,112,636	+		MIT1002_03679	0.78	+0.5
4,112,646	+		MIT1002_03679	0.79	+0.2
4,112,654	-		MIT1002_03679	0.80	+1.1
4,112,686	-		MIT1002_03679	0.82	-0.9
4,112,689	-		MIT1002_03679	0.83	+0.2
4,112,689	-		MIT1002_03679	0.83	-0.4
4,112,689	-		MIT1002_03679	0.83	-2.4
4,112,704	-		MIT1002_03679	0.84	-1.7
4,112,794	+				-1.2
4,112,829	+				+1.4
4,112,833	+				-2.7
4,112,850	+				-0.5
4,112,853	-				-0.8
4,112,853	-				-2.9
4,112,860	-				-2.2
4,112,862	+				+0.1
4,112,922	+				-1.0
4,112,922	+				-0.2
4,112,941	+				+1.3
4,112,956	+				-1.5
4,112,956	+				-2.6
4,112,956	+				-1.2
4,112,964	-				+2.3
4,112,964	-				-0.0
4,112,971	-				+1.2
4,113,038	-				-0.4
4,113,068	+				-0.6
4,113,103	-		MIT1002_03680	0.10	-0.0
4,113,167	+		MIT1002_03680	0.17	+0.5
4,113,211	-		MIT1002_03680	0.21	-1.7
4,113,261	+		MIT1002_03680	0.26	+0.6
4,113,265	-		MIT1002_03680	0.27	-1.7
4,113,452	-		MIT1002_03680	0.46	-0.7
4,113,501	-		MIT1002_03680	0.51	-1.9
4,113,544	+		MIT1002_03680	0.55	+0.6
4,113,552	-		MIT1002_03680	0.56	-2.6
4,113,552	-		MIT1002_03680	0.56	+0.2
4,113,573	+		MIT1002_03680	0.58	-0.8
4,113,590	+		MIT1002_03680	0.60	-0.6
4,113,593	-		MIT1002_03680	0.60	+0.5
4,113,598	-		MIT1002_03680	0.61	-0.9
4,113,598	-		MIT1002_03680	0.61	-1.6
4,113,598	-		MIT1002_03680	0.61	+0.7
4,113,598	-		MIT1002_03680	0.61	-0.4
4,113,672	-		MIT1002_03680	0.68	-1.7
4,113,746	-		MIT1002_03680	0.76	+0.3
4,113,783	+		MIT1002_03680	0.80	+0.1
4,113,783	+		MIT1002_03680	0.80	-2.2
4,113,792	-		MIT1002_03680	0.80	+1.1
4,113,793	+		MIT1002_03680	0.81	+1.1
4,113,801	-		MIT1002_03680	0.81	-1.3
4,113,801	-		MIT1002_03680	0.81	-1.7
4,113,801	-		MIT1002_03680	0.81	+0.5
4,113,811	-		MIT1002_03680	0.82	-0.6
4,113,811	-		MIT1002_03680	0.82	-1.4
4,113,811	-		MIT1002_03680	0.82	-0.4
4,113,864	-		MIT1002_03680	0.88	-1.1