Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02635

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 7
2,927,755	-				-3.2
2,927,757	+				-1.4
2,927,758	+				-0.9
2,927,765	-				-2.4
2,927,765	-				-1.1
2,927,798	+		MIT1002_02634	0.12	-1.4
2,927,808	+		MIT1002_02634	0.12	-1.3
2,927,814	-		MIT1002_02634	0.13	-4.6
2,927,841	+		MIT1002_02634	0.16	-3.1
2,927,917	+		MIT1002_02634	0.23	-5.0
2,927,917	+		MIT1002_02634	0.23	-3.8
2,927,922	+		MIT1002_02634	0.23	-1.5
2,927,930	-		MIT1002_02634	0.24	-3.1
2,928,025	+		MIT1002_02634	0.33	-1.9
2,928,025	+		MIT1002_02634	0.33	-4.0
2,928,064	+		MIT1002_02634	0.36	-2.1
2,928,072	-		MIT1002_02634	0.37	-4.1
2,928,167	+		MIT1002_02634	0.46	-4.5
2,928,167	+		MIT1002_02634	0.46	-2.1
2,928,167	+		MIT1002_02634	0.46	-0.7
2,928,175	-		MIT1002_02634	0.46	-0.7
2,928,175	-		MIT1002_02634	0.46	-0.2
2,928,201	+		MIT1002_02634	0.49	-3.4
2,928,282	-		MIT1002_02634	0.56	-4.1
2,928,283	+		MIT1002_02634	0.56	-1.7
2,928,285	+		MIT1002_02634	0.57	-2.5
2,928,298	-		MIT1002_02634	0.58	-1.9
2,928,302	+		MIT1002_02634	0.58	-2.3
2,928,302	+		MIT1002_02634	0.58	-3.5
2,928,310	-		MIT1002_02634	0.59	-0.4
2,928,310	-		MIT1002_02634	0.59	+0.0
2,928,373	+		MIT1002_02634	0.65	-1.9
2,928,398	-		MIT1002_02634	0.67	-4.9
2,928,398	-		MIT1002_02634	0.67	-7.2
2,928,422	-		MIT1002_02634	0.69	-2.3
2,928,449	-		MIT1002_02634	0.72	-2.8
2,928,463	+		MIT1002_02634	0.73	-5.7
2,928,577	+		MIT1002_02634	0.84	+0.0
2,928,591	+		MIT1002_02634	0.85	-3.9
2,928,592	+		MIT1002_02634	0.85	-2.2
2,928,613	+		MIT1002_02634	0.87	-3.9
2,928,828	+				-3.6
2,928,828	+				-2.9
2,928,846	-				-3.6
2,928,864	-		MIT1002_02635	0.11	-3.1
2,928,874	-		MIT1002_02635	0.12	-0.9
2,928,879	-		MIT1002_02635	0.12	-0.4
2,928,923	+		MIT1002_02635	0.16	-3.0
2,928,961	-		MIT1002_02635	0.20	-3.7
2,928,965	+		MIT1002_02635	0.20	-2.8
2,928,975	-		MIT1002_02635	0.21	-2.9
2,929,009	-		MIT1002_02635	0.24	-0.7
2,929,010	-		MIT1002_02635	0.24	-1.3
2,929,046	+		MIT1002_02635	0.28	-3.7
2,929,050	+		MIT1002_02635	0.28	-3.0
2,929,152	+		MIT1002_02635	0.38	-2.5
2,929,213	-		MIT1002_02635	0.43	-0.6
2,929,331	+		MIT1002_02635	0.54	-4.8
2,929,443	+		MIT1002_02635	0.65	-1.6
2,929,443	+		MIT1002_02635	0.65	-5.8
2,929,443	+		MIT1002_02635	0.65	-0.6
2,929,443	+		MIT1002_02635	0.65	-3.5
2,929,443	+		MIT1002_02635	0.65	-2.0
2,929,443	+		MIT1002_02635	0.65	-0.6
2,929,443	+		MIT1002_02635	0.65	-2.9
2,929,443	+		MIT1002_02635	0.65	+0.0
2,929,443	+		MIT1002_02635	0.65	-4.5
2,929,443	+		MIT1002_02635	0.65	-1.4
2,929,443	+		MIT1002_02635	0.65	-2.8
2,929,443	+		MIT1002_02635	0.65	-3.5
2,929,443	+		MIT1002_02635	0.65	-4.7
2,929,445	+		MIT1002_02635	0.65	-0.4
2,929,451	-		MIT1002_02635	0.66	-1.5
2,929,451	-		MIT1002_02635	0.66	-3.5
2,929,451	-		MIT1002_02635	0.66	-3.0
2,929,451	-		MIT1002_02635	0.66	-1.3
2,929,451	-		MIT1002_02635	0.66	-0.4
2,929,451	-		MIT1002_02635	0.66	-2.4
2,929,451	-		MIT1002_02635	0.66	-3.0
2,929,453	-		MIT1002_02635	0.66	-2.3
2,929,453	-		MIT1002_02635	0.66	-2.8
2,929,458	+		MIT1002_02635	0.66	-3.0
2,929,458	+		MIT1002_02635	0.66	-1.0
2,929,458	+		MIT1002_02635	0.66	-2.9
2,929,460	-		MIT1002_02635	0.66	-1.0
2,929,465	-		MIT1002_02635	0.67	-3.9
2,929,466	-		MIT1002_02635	0.67	-4.6
2,929,487	+		MIT1002_02635	0.69	-1.7
2,929,514	-		MIT1002_02635	0.71	-2.7
2,929,674	+		MIT1002_02635	0.86	-2.0
2,929,680	+		MIT1002_02635	0.87	-3.1
2,929,728	-				-3.9
2,929,745	+				-3.1
2,929,771	-				-3.5
2,929,782	+				-6.6
2,929,793	+				-3.3
2,929,801	+				-1.4
2,929,822	-				-0.7
2,929,840	-				-4.3
2,929,894	+		MIT1002_02636	0.12	-2.8
2,929,916	+		MIT1002_02636	0.15	-3.7
2,930,039	-		MIT1002_02636	0.35	-5.4
2,930,083	-		MIT1002_02636	0.42	-4.8
2,930,103	-		MIT1002_02636	0.45	-0.2
2,930,103	-		MIT1002_02636	0.45	-3.5
2,930,125	+		MIT1002_02636	0.49	+0.0
2,930,144	+		MIT1002_02636	0.52	-1.3
2,930,151	-		MIT1002_02636	0.53	-2.0
2,930,196	-		MIT1002_02636	0.60	-3.9
2,930,209	+		MIT1002_02636	0.62	-4.0
2,930,214	+		MIT1002_02636	0.63	-4.1
2,930,270	+		MIT1002_02636	0.72	+0.3
2,930,288	+		MIT1002_02636	0.74	+0.6
2,930,288	+		MIT1002_02636	0.74	-4.2
2,930,520	+				-2.4
2,930,537	-		MIT1002_02637	0.12	-3.6
2,930,550	+		MIT1002_02637	0.14	-2.7
2,930,645	+		MIT1002_02637	0.27	-3.5
2,930,645	+		MIT1002_02637	0.27	-2.1
2,930,730	+		MIT1002_02637	0.38	-3.6
2,930,730	+		MIT1002_02637	0.38	-3.2
2,930,738	-		MIT1002_02637	0.39	+0.6
2,930,806	+		MIT1002_02637	0.49	-3.1