Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01978

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 7
2,211,365	-		MIT1002_01977	0.61	+0.5
2,211,387	-		MIT1002_01977	0.62	+0.8
2,211,408	-		MIT1002_01977	0.64	+1.4
2,211,461	+		MIT1002_01977	0.67	+0.1
2,211,469	-		MIT1002_01977	0.68	-0.8
2,211,469	-		MIT1002_01977	0.68	-3.8
2,211,817	+				-0.4
2,211,859	-				-1.6
2,211,883	+				-1.5
2,211,891	-				+0.5
2,211,936	-				-0.1
2,211,962	+				-1.1
2,211,970	-				-1.2
2,212,001	+				-0.6
2,212,044	+				-0.6
2,212,057	-				+0.4
2,212,129	-				-0.6
2,212,227	-				-1.0
2,212,233	-				-0.6
2,212,359	+				-2.5
2,212,374	+				+0.6
2,212,420	+		MIT1002_01978	0.13	-3.0
2,212,452	+		MIT1002_01978	0.16	-1.7
2,212,504	-		MIT1002_01978	0.20	+1.3
2,212,519	-		MIT1002_01978	0.21	-3.4
2,212,534	+		MIT1002_01978	0.23	-1.9
2,212,584	-		MIT1002_01978	0.27	-1.1
2,212,605	-		MIT1002_01978	0.29	-1.7
2,212,689	-		MIT1002_01978	0.36	-0.6
2,212,721	-		MIT1002_01978	0.39	-0.1
2,212,723	+		MIT1002_01978	0.39	-1.3
2,212,723	+		MIT1002_01978	0.39	-2.0
2,212,723	+		MIT1002_01978	0.39	-0.6
2,212,723	+		MIT1002_01978	0.39	-0.2
2,212,723	+		MIT1002_01978	0.39	-1.1
2,212,723	+		MIT1002_01978	0.39	-0.8
2,212,723	+		MIT1002_01978	0.39	-1.2
2,212,723	+		MIT1002_01978	0.39	-0.6
2,212,723	+		MIT1002_01978	0.39	-2.0
2,212,731	-		MIT1002_01978	0.40	-1.8
2,212,731	-		MIT1002_01978	0.40	+1.0
2,212,731	-		MIT1002_01978	0.40	-1.0
2,212,731	-		MIT1002_01978	0.40	-0.4
2,212,731	-		MIT1002_01978	0.40	-2.3
2,212,731	-		MIT1002_01978	0.40	-0.4
2,212,741	-		MIT1002_01978	0.41	+0.9
2,212,785	+		MIT1002_01978	0.44	+0.9
2,212,793	-		MIT1002_01978	0.45	-1.4
2,212,821	+		MIT1002_01978	0.48	-0.8
2,212,840	+		MIT1002_01978	0.49	-3.6
2,212,842	+		MIT1002_01978	0.49	-1.4
2,212,876	+		MIT1002_01978	0.52	-0.7
2,212,899	-		MIT1002_01978	0.54	-1.3
2,212,903	+		MIT1002_01978	0.55	-1.6
2,212,950	+		MIT1002_01978	0.59	-2.5
2,212,958	-		MIT1002_01978	0.59	+1.0
2,213,139	-		MIT1002_01978	0.75	-0.4
2,213,206	-		MIT1002_01978	0.81	-2.6
2,213,244	-		MIT1002_01978	0.84	-1.8
2,213,421	+				-1.9
2,213,423	+				+1.7
2,213,423	+				+0.4
2,213,423	+				-3.3
2,213,423	+				-0.5
2,213,423	+				-0.1
2,213,424	-				-2.8
2,213,429	-				+0.3
2,213,431	-				-2.6
2,213,465	+				-1.1
2,213,539	+				-3.3
2,213,564	-				-1.9
2,213,571	+				-3.2
2,213,596	-				-1.5
2,213,663	+		MIT1002_01979	0.16	-1.0
2,213,710	-		MIT1002_01979	0.20	-2.1
2,213,797	+		MIT1002_01979	0.27	-3.7
2,213,805	-		MIT1002_01979	0.28	-1.6
2,213,852	+		MIT1002_01979	0.32	-3.4
2,213,852	-		MIT1002_01979	0.32	-1.9
2,213,855	-		MIT1002_01979	0.33	-2.0
2,213,864	+		MIT1002_01979	0.33	-2.9
2,213,872	-		MIT1002_01979	0.34	-2.3
2,213,883	+		MIT1002_01979	0.35	-3.7
2,213,891	-		MIT1002_01979	0.36	-0.4
2,213,954	+		MIT1002_01979	0.41	-2.8
2,213,954	+		MIT1002_01979	0.41	-3.8
2,213,970	+		MIT1002_01979	0.43	-2.3
2,214,012	-		MIT1002_01979	0.47	-2.1
2,214,037	+		MIT1002_01979	0.49	-2.0
2,214,057	+		MIT1002_01979	0.50	-3.3
2,214,100	+		MIT1002_01979	0.54	-2.2
2,214,116	+		MIT1002_01979	0.56	-2.6
2,214,247	+		MIT1002_01979	0.67	-1.8
2,214,274	+		MIT1002_01979	0.70	-2.9
2,214,307	+		MIT1002_01979	0.73	-2.0
2,214,316	+		MIT1002_01979	0.73	-3.3
2,214,322	-		MIT1002_01979	0.74	-1.3
2,214,340	+		MIT1002_01979	0.76	-2.9
2,214,340	+		MIT1002_01979	0.76	-4.0
2,214,340	+		MIT1002_01979	0.76	-1.3
2,214,340	+		MIT1002_01979	0.76	-2.9
2,214,348	-		MIT1002_01979	0.76	-3.1
2,214,348	-		MIT1002_01979	0.76	-4.0
2,214,348	-		MIT1002_01979	0.76	-3.8