Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00901

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00900 and MIT1002_00901 are separated by 34 nucleotidesMIT1002_00901 and MIT1002_00902 overlap by 8 nucleotides MIT1002_00900: MIT1002_00900 - Na(+)/serine-threonine symporter, at 995,448 to 996,668 _00900 MIT1002_00901: MIT1002_00901 - Formimidoylglutamase, at 996,703 to 997,671 _00901 MIT1002_00902: MIT1002_00902 - Imidazolonepropionase, at 997,664 to 998,923 _00902 Position (kb) 996 997 998Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 995.722 kb on - strand, within MIT1002_00900at 995.780 kb on - strand, within MIT1002_00900at 995.780 kb on - strand, within MIT1002_00900at 995.780 kb on - strand, within MIT1002_00900at 995.788 kb on + strand, within MIT1002_00900at 995.796 kb on - strand, within MIT1002_00900at 995.796 kb on - strand, within MIT1002_00900at 995.796 kb on - strand, within MIT1002_00900at 995.796 kb on - strand, within MIT1002_00900at 995.796 kb on - strand, within MIT1002_00900at 995.796 kb on - strand, within MIT1002_00900at 995.818 kb on + strand, within MIT1002_00900at 995.821 kb on + strand, within MIT1002_00900at 995.839 kb on - strand, within MIT1002_00900at 996.056 kb on - strand, within MIT1002_00900at 996.100 kb on + strand, within MIT1002_00900at 996.102 kb on - strand, within MIT1002_00900at 996.108 kb on + strand, within MIT1002_00900at 996.108 kb on + strand, within MIT1002_00900at 996.182 kb on + strand, within MIT1002_00900at 996.182 kb on + strand, within MIT1002_00900at 996.190 kb on - strand, within MIT1002_00900at 996.228 kb on - strand, within MIT1002_00900at 996.278 kb on + strand, within MIT1002_00900at 996.286 kb on - strand, within MIT1002_00900at 996.354 kb on + strand, within MIT1002_00900at 996.364 kb on + strand, within MIT1002_00900at 996.511 kb on + strand, within MIT1002_00900at 996.511 kb on + strand, within MIT1002_00900at 996.519 kb on - strand, within MIT1002_00900at 996.521 kb on + strand, within MIT1002_00900at 996.521 kb on + strand, within MIT1002_00900at 996.529 kb on - strand, within MIT1002_00900at 996.554 kb on - strandat 996.565 kb on + strandat 996.565 kb on + strandat 996.573 kb on - strandat 996.582 kb on + strandat 996.582 kb on + strandat 996.582 kb on + strandat 996.582 kb on + strandat 996.582 kb on + strandat 996.582 kb on + strandat 996.590 kb on - strandat 996.590 kb on - strandat 996.594 kb on + strandat 996.603 kb on + strandat 996.603 kb on + strandat 996.603 kb on + strandat 996.692 kb on + strandat 996.709 kb on - strandat 996.813 kb on + strand, within MIT1002_00901at 996.813 kb on + strand, within MIT1002_00901at 996.813 kb on - strand, within MIT1002_00901at 996.836 kb on - strand, within MIT1002_00901at 996.836 kb on - strand, within MIT1002_00901at 996.841 kb on - strand, within MIT1002_00901at 996.926 kb on - strand, within MIT1002_00901at 997.007 kb on - strand, within MIT1002_00901at 997.046 kb on + strand, within MIT1002_00901at 997.169 kb on + strand, within MIT1002_00901at 997.169 kb on + strand, within MIT1002_00901at 997.177 kb on - strand, within MIT1002_00901at 997.177 kb on - strand, within MIT1002_00901at 997.182 kb on + strand, within MIT1002_00901at 997.182 kb on + strand, within MIT1002_00901at 997.199 kb on + strand, within MIT1002_00901at 997.286 kb on - strand, within MIT1002_00901at 997.294 kb on - strand, within MIT1002_00901at 997.394 kb on + strand, within MIT1002_00901at 997.444 kb on - strand, within MIT1002_00901at 997.455 kb on - strand, within MIT1002_00901at 997.455 kb on - strand, within MIT1002_00901at 997.455 kb on - strand, within MIT1002_00901at 997.483 kb on + strand, within MIT1002_00901at 997.562 kb on - strand, within MIT1002_00901at 997.575 kb on - strandat 997.617 kb on + strandat 997.647 kb on + strandat 997.669 kb on + strandat 997.680 kb on + strandat 997.688 kb on - strandat 997.688 kb on - strandat 997.688 kb on - strandat 997.794 kb on - strand, within MIT1002_00902at 997.794 kb on - strand, within MIT1002_00902at 997.801 kb on + strand, within MIT1002_00902at 997.809 kb on - strand, within MIT1002_00902at 997.809 kb on - strand, within MIT1002_00902at 997.809 kb on - strand, within MIT1002_00902at 997.843 kb on - strand, within MIT1002_00902at 997.857 kb on + strand, within MIT1002_00902at 997.865 kb on - strand, within MIT1002_00902at 997.875 kb on - strand, within MIT1002_00902at 997.894 kb on + strand, within MIT1002_00902at 997.902 kb on - strand, within MIT1002_00902at 997.955 kb on - strand, within MIT1002_00902at 997.960 kb on + strand, within MIT1002_00902at 997.960 kb on + strand, within MIT1002_00902at 997.960 kb on + strand, within MIT1002_00902at 998.016 kb on + strand, within MIT1002_00902at 998.024 kb on - strand, within MIT1002_00902at 998.102 kb on + strand, within MIT1002_00902at 998.113 kb on - strand, within MIT1002_00902at 998.179 kb on + strand, within MIT1002_00902at 998.182 kb on + strand, within MIT1002_00902at 998.187 kb on - strand, within MIT1002_00902at 998.187 kb on - strand, within MIT1002_00902at 998.190 kb on - strand, within MIT1002_00902at 998.190 kb on - strand, within MIT1002_00902at 998.190 kb on - strand, within MIT1002_00902at 998.195 kb on - strand, within MIT1002_00902at 998.348 kb on - strand, within MIT1002_00902at 998.392 kb on + strand, within MIT1002_00902at 998.392 kb on + strand, within MIT1002_00902at 998.392 kb on + strand, within MIT1002_00902at 998.392 kb on + strand, within MIT1002_00902at 998.441 kb on - strand, within MIT1002_00902at 998.469 kb on + strand, within MIT1002_00902at 998.512 kb on - strand, within MIT1002_00902at 998.522 kb on - strand, within MIT1002_00902at 998.536 kb on - strand, within MIT1002_00902at 998.593 kb on + strand, within MIT1002_00902at 998.659 kb on - strand, within MIT1002_00902at 998.659 kb on - strand, within MIT1002_00902

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 7
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995,722 - MIT1002_00900 0.22 +1.6
995,780 - MIT1002_00900 0.27 +0.5
995,780 - MIT1002_00900 0.27 +1.2
995,780 - MIT1002_00900 0.27 +1.2
995,788 + MIT1002_00900 0.28 -2.4
995,796 - MIT1002_00900 0.29 -1.5
995,796 - MIT1002_00900 0.29 +0.5
995,796 - MIT1002_00900 0.29 +0.5
995,796 - MIT1002_00900 0.29 -2.2
995,796 - MIT1002_00900 0.29 +0.2
995,796 - MIT1002_00900 0.29 +0.6
995,818 + MIT1002_00900 0.30 +1.1
995,821 + MIT1002_00900 0.31 +0.8
995,839 - MIT1002_00900 0.32 -0.7
996,056 - MIT1002_00900 0.50 +3.6
996,100 + MIT1002_00900 0.53 +0.1
996,102 - MIT1002_00900 0.54 -0.4
996,108 + MIT1002_00900 0.54 -2.5
996,108 + MIT1002_00900 0.54 +0.5
996,182 + MIT1002_00900 0.60 -0.3
996,182 + MIT1002_00900 0.60 +0.2
996,190 - MIT1002_00900 0.61 +1.8
996,228 - MIT1002_00900 0.64 +0.9
996,278 + MIT1002_00900 0.68 +0.8
996,286 - MIT1002_00900 0.69 -1.0
996,354 + MIT1002_00900 0.74 +2.6
996,364 + MIT1002_00900 0.75 +0.2
996,511 + MIT1002_00900 0.87 -0.8
996,511 + MIT1002_00900 0.87 +0.5
996,519 - MIT1002_00900 0.88 -0.4
996,521 + MIT1002_00900 0.88 -1.6
996,521 + MIT1002_00900 0.88 +0.8
996,529 - MIT1002_00900 0.89 +2.4
996,554 - -1.0
996,565 + -0.4
996,565 + -1.5
996,573 - -0.4
996,582 + +1.6
996,582 + +0.8
996,582 + -0.8
996,582 + -0.7
996,582 + -1.3
996,582 + +1.6
996,590 - -0.0
996,590 - -0.0
996,594 + -0.9
996,603 + +0.5
996,603 + -0.6
996,603 + -1.5
996,692 + -0.0
996,709 - +0.5
996,813 + MIT1002_00901 0.11 +1.1
996,813 + MIT1002_00901 0.11 -1.5
996,813 - MIT1002_00901 0.11 -0.3
996,836 - MIT1002_00901 0.14 +0.3
996,836 - MIT1002_00901 0.14 -0.6
996,841 - MIT1002_00901 0.14 -1.8
996,926 - MIT1002_00901 0.23 -0.2
997,007 - MIT1002_00901 0.31 +0.0
997,046 + MIT1002_00901 0.35 -1.3
997,169 + MIT1002_00901 0.48 +1.2
997,169 + MIT1002_00901 0.48 -1.3
997,177 - MIT1002_00901 0.49 +0.3
997,177 - MIT1002_00901 0.49 -2.2
997,182 + MIT1002_00901 0.49 -1.1
997,182 + MIT1002_00901 0.49 +0.8
997,199 + MIT1002_00901 0.51 -0.7
997,286 - MIT1002_00901 0.60 -1.0
997,294 - MIT1002_00901 0.61 -0.7
997,394 + MIT1002_00901 0.71 -1.7
997,444 - MIT1002_00901 0.76 +0.4
997,455 - MIT1002_00901 0.78 -0.5
997,455 - MIT1002_00901 0.78 -1.3
997,455 - MIT1002_00901 0.78 -2.3
997,483 + MIT1002_00901 0.80 +0.2
997,562 - MIT1002_00901 0.89 +0.3
997,575 - +1.7
997,617 + -0.7
997,647 + -0.2
997,669 + -1.5
997,680 + +1.9
997,688 - -1.5
997,688 - -0.6
997,688 - +0.8
997,794 - MIT1002_00902 0.10 -0.2
997,794 - MIT1002_00902 0.10 +0.3
997,801 + MIT1002_00902 0.11 -1.1
997,809 - MIT1002_00902 0.12 -0.5
997,809 - MIT1002_00902 0.12 +1.9
997,809 - MIT1002_00902 0.12 +1.5
997,843 - MIT1002_00902 0.14 -0.9
997,857 + MIT1002_00902 0.15 -1.6
997,865 - MIT1002_00902 0.16 +0.7
997,875 - MIT1002_00902 0.17 +0.1
997,894 + MIT1002_00902 0.18 -0.7
997,902 - MIT1002_00902 0.19 +1.0
997,955 - MIT1002_00902 0.23 +1.9
997,960 + MIT1002_00902 0.23 +1.5
997,960 + MIT1002_00902 0.23 -2.4
997,960 + MIT1002_00902 0.23 -2.0
998,016 + MIT1002_00902 0.28 -0.3
998,024 - MIT1002_00902 0.29 +0.2
998,102 + MIT1002_00902 0.35 -0.6
998,113 - MIT1002_00902 0.36 +1.5
998,179 + MIT1002_00902 0.41 -0.4
998,182 + MIT1002_00902 0.41 -1.6
998,187 - MIT1002_00902 0.42 -1.3
998,187 - MIT1002_00902 0.42 +0.3
998,190 - MIT1002_00902 0.42 +1.9
998,190 - MIT1002_00902 0.42 +1.8
998,190 - MIT1002_00902 0.42 +0.4
998,195 - MIT1002_00902 0.42 +0.0
998,348 - MIT1002_00902 0.54 -0.8
998,392 + MIT1002_00902 0.58 +0.2
998,392 + MIT1002_00902 0.58 +0.8
998,392 + MIT1002_00902 0.58 +0.5
998,392 + MIT1002_00902 0.58 -1.3
998,441 - MIT1002_00902 0.62 -1.0
998,469 + MIT1002_00902 0.64 -2.1
998,512 - MIT1002_00902 0.67 +1.3
998,522 - MIT1002_00902 0.68 +0.7
998,536 - MIT1002_00902 0.69 -3.3
998,593 + MIT1002_00902 0.74 -2.5
998,659 - MIT1002_00902 0.79 +0.5
998,659 - MIT1002_00902 0.79 +0.3

Or see this region's nucleotide sequence