Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00856

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00854 and MIT1002_00855 are separated by 19 nucleotidesMIT1002_00855 and MIT1002_00856 are separated by 23 nucleotidesMIT1002_00856 and MIT1002_00857 overlap by 4 nucleotides MIT1002_00854: MIT1002_00854 - aromatic amino acid exporter, at 936,412 to 937,344 _00854 MIT1002_00855: MIT1002_00855 - lysine-arginine-ornithine-binding periplasmic protein, at 937,364 to 938,128 _00855 MIT1002_00856: MIT1002_00856 - Autoinducer 2 sensor kinase/phosphatase LuxQ, at 938,152 to 941,031 _00856 MIT1002_00857: MIT1002_00857 - leucine ABC transporter subunit substrate-binding protein LivK, at 941,028 to 942,206 _00857 Position (kb) 938 939 940 941 942Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 937.269 kb on - strandat 937.279 kb on - strandat 937.279 kb on - strandat 937.279 kb on - strandat 937.287 kb on - strandat 937.339 kb on + strandat 937.363 kb on - strandat 937.459 kb on - strand, within MIT1002_00855at 937.569 kb on + strand, within MIT1002_00855at 937.587 kb on - strand, within MIT1002_00855at 937.601 kb on + strand, within MIT1002_00855at 937.608 kb on - strand, within MIT1002_00855at 937.608 kb on - strand, within MIT1002_00855at 937.614 kb on - strand, within MIT1002_00855at 937.619 kb on - strand, within MIT1002_00855at 937.689 kb on - strand, within MIT1002_00855at 937.717 kb on + strand, within MIT1002_00855at 937.773 kb on - strand, within MIT1002_00855at 937.827 kb on - strand, within MIT1002_00855at 937.876 kb on + strand, within MIT1002_00855at 937.884 kb on - strand, within MIT1002_00855at 937.884 kb on - strand, within MIT1002_00855at 937.987 kb on + strand, within MIT1002_00855at 937.987 kb on + strand, within MIT1002_00855at 937.987 kb on + strand, within MIT1002_00855at 937.987 kb on + strand, within MIT1002_00855at 937.987 kb on + strand, within MIT1002_00855at 937.987 kb on + strand, within MIT1002_00855at 937.987 kb on + strand, within MIT1002_00855at 937.995 kb on - strand, within MIT1002_00855at 937.995 kb on - strand, within MIT1002_00855at 937.995 kb on - strand, within MIT1002_00855at 937.995 kb on - strand, within MIT1002_00855at 937.995 kb on - strand, within MIT1002_00855at 937.995 kb on - strand, within MIT1002_00855at 937.995 kb on - strand, within MIT1002_00855at 937.995 kb on - strand, within MIT1002_00855at 937.995 kb on - strand, within MIT1002_00855at 937.995 kb on - strand, within MIT1002_00855at 937.995 kb on - strand, within MIT1002_00855at 937.995 kb on - strand, within MIT1002_00855at 937.995 kb on - strand, within MIT1002_00855at 937.995 kb on - strand, within MIT1002_00855at 937.995 kb on - strand, within MIT1002_00855at 937.995 kb on - strand, within MIT1002_00855at 938.099 kb on + strandat 938.197 kb on + strandat 938.205 kb on - strandat 938.225 kb on - strandat 938.234 kb on + strandat 938.267 kb on + strandat 938.285 kb on - strandat 938.344 kb on - strandat 938.370 kb on + strandat 938.370 kb on + strandat 938.403 kb on + strandat 938.412 kb on - strandat 938.510 kb on - strand, within MIT1002_00856at 938.577 kb on + strand, within MIT1002_00856at 938.577 kb on + strand, within MIT1002_00856at 938.579 kb on + strand, within MIT1002_00856at 938.585 kb on - strand, within MIT1002_00856at 938.597 kb on + strand, within MIT1002_00856at 938.597 kb on + strand, within MIT1002_00856at 938.597 kb on + strand, within MIT1002_00856at 938.605 kb on - strand, within MIT1002_00856at 938.605 kb on - strand, within MIT1002_00856at 938.636 kb on - strand, within MIT1002_00856at 938.653 kb on + strand, within MIT1002_00856at 938.724 kb on + strand, within MIT1002_00856at 938.730 kb on + strand, within MIT1002_00856at 938.730 kb on + strand, within MIT1002_00856at 938.764 kb on - strand, within MIT1002_00856at 938.837 kb on - strand, within MIT1002_00856at 938.837 kb on - strand, within MIT1002_00856at 938.837 kb on - strand, within MIT1002_00856at 938.839 kb on + strand, within MIT1002_00856at 938.865 kb on - strand, within MIT1002_00856at 938.889 kb on + strand, within MIT1002_00856at 938.897 kb on + strand, within MIT1002_00856at 938.897 kb on - strand, within MIT1002_00856at 938.968 kb on + strand, within MIT1002_00856at 938.968 kb on + strand, within MIT1002_00856at 938.968 kb on + strand, within MIT1002_00856at 938.968 kb on + strand, within MIT1002_00856at 938.976 kb on - strand, within MIT1002_00856at 938.976 kb on - strand, within MIT1002_00856at 938.976 kb on - strand, within MIT1002_00856at 938.976 kb on - strand, within MIT1002_00856at 938.976 kb on - strand, within MIT1002_00856at 938.976 kb on - strand, within MIT1002_00856at 938.976 kb on - strand, within MIT1002_00856at 938.976 kb on - strand, within MIT1002_00856at 938.987 kb on - strand, within MIT1002_00856at 939.006 kb on + strand, within MIT1002_00856at 939.020 kb on - strand, within MIT1002_00856at 939.151 kb on + strand, within MIT1002_00856at 939.213 kb on + strand, within MIT1002_00856at 939.221 kb on - strand, within MIT1002_00856at 939.221 kb on - strand, within MIT1002_00856at 939.255 kb on + strand, within MIT1002_00856at 939.263 kb on - strand, within MIT1002_00856at 939.263 kb on - strand, within MIT1002_00856at 939.366 kb on + strand, within MIT1002_00856at 939.381 kb on + strand, within MIT1002_00856at 939.381 kb on + strand, within MIT1002_00856at 939.389 kb on - strand, within MIT1002_00856at 939.494 kb on + strand, within MIT1002_00856at 939.512 kb on - strand, within MIT1002_00856at 939.525 kb on + strand, within MIT1002_00856at 939.595 kb on + strand, within MIT1002_00856at 939.602 kb on + strand, within MIT1002_00856at 939.692 kb on + strand, within MIT1002_00856at 939.692 kb on + strand, within MIT1002_00856at 939.922 kb on + strand, within MIT1002_00856at 940.020 kb on - strand, within MIT1002_00856at 940.020 kb on - strand, within MIT1002_00856at 940.069 kb on - strand, within MIT1002_00856at 940.128 kb on + strand, within MIT1002_00856at 940.199 kb on - strand, within MIT1002_00856at 940.222 kb on - strand, within MIT1002_00856at 940.257 kb on - strand, within MIT1002_00856at 940.272 kb on - strand, within MIT1002_00856at 940.304 kb on + strand, within MIT1002_00856at 940.314 kb on + strand, within MIT1002_00856at 940.314 kb on + strand, within MIT1002_00856at 940.322 kb on - strand, within MIT1002_00856at 940.330 kb on + strand, within MIT1002_00856at 940.332 kb on - strand, within MIT1002_00856at 940.397 kb on - strand, within MIT1002_00856at 940.421 kb on + strand, within MIT1002_00856at 940.421 kb on + strand, within MIT1002_00856at 940.424 kb on - strand, within MIT1002_00856at 940.431 kb on + strand, within MIT1002_00856at 940.447 kb on - strand, within MIT1002_00856at 940.447 kb on - strand, within MIT1002_00856at 940.470 kb on + strand, within MIT1002_00856at 940.470 kb on + strand, within MIT1002_00856at 940.470 kb on + strand, within MIT1002_00856at 940.470 kb on + strand, within MIT1002_00856at 940.470 kb on + strand, within MIT1002_00856at 940.474 kb on + strand, within MIT1002_00856at 940.474 kb on + strand, within MIT1002_00856at 940.478 kb on - strand, within MIT1002_00856at 940.478 kb on - strand, within MIT1002_00856at 940.478 kb on - strand, within MIT1002_00856at 940.478 kb on - strand, within MIT1002_00856at 940.478 kb on - strand, within MIT1002_00856at 940.495 kb on - strand, within MIT1002_00856at 940.502 kb on - strand, within MIT1002_00856at 940.521 kb on - strand, within MIT1002_00856at 940.538 kb on + strand, within MIT1002_00856at 940.538 kb on + strand, within MIT1002_00856at 940.546 kb on - strand, within MIT1002_00856at 940.546 kb on - strand, within MIT1002_00856at 940.584 kb on - strand, within MIT1002_00856at 940.584 kb on - strand, within MIT1002_00856at 940.586 kb on + strand, within MIT1002_00856at 940.605 kb on + strand, within MIT1002_00856at 940.605 kb on + strand, within MIT1002_00856at 940.613 kb on - strand, within MIT1002_00856at 940.613 kb on - strand, within MIT1002_00856at 940.613 kb on - strand, within MIT1002_00856at 940.631 kb on + strand, within MIT1002_00856at 940.631 kb on + strand, within MIT1002_00856at 940.631 kb on + strand, within MIT1002_00856at 940.631 kb on + strand, within MIT1002_00856at 940.639 kb on - strand, within MIT1002_00856at 940.639 kb on - strand, within MIT1002_00856at 940.819 kb on + strandat 940.830 kb on + strandat 940.830 kb on + strandat 940.830 kb on + strandat 940.830 kb on + strandat 940.830 kb on + strandat 940.838 kb on - strandat 940.838 kb on - strandat 940.972 kb on - strandat 941.019 kb on - strandat 941.020 kb on - strandat 941.102 kb on + strandat 941.128 kb on + strandat 941.131 kb on + strandat 941.136 kb on - strandat 941.139 kb on - strandat 941.139 kb on - strandat 941.139 kb on - strandat 941.139 kb on - strandat 941.141 kb on + strandat 941.156 kb on - strand, within MIT1002_00857at 941.169 kb on + strand, within MIT1002_00857at 941.177 kb on - strand, within MIT1002_00857at 941.177 kb on - strand, within MIT1002_00857at 941.179 kb on - strand, within MIT1002_00857at 941.195 kb on + strand, within MIT1002_00857at 941.195 kb on + strand, within MIT1002_00857at 941.275 kb on + strand, within MIT1002_00857at 941.316 kb on - strand, within MIT1002_00857at 941.395 kb on + strand, within MIT1002_00857at 941.411 kb on + strand, within MIT1002_00857at 941.440 kb on + strand, within MIT1002_00857at 941.493 kb on + strand, within MIT1002_00857at 941.506 kb on - strand, within MIT1002_00857at 941.506 kb on - strand, within MIT1002_00857at 941.573 kb on - strand, within MIT1002_00857at 941.588 kb on - strand, within MIT1002_00857at 941.614 kb on - strand, within MIT1002_00857at 941.614 kb on - strand, within MIT1002_00857at 941.670 kb on + strand, within MIT1002_00857at 941.670 kb on + strand, within MIT1002_00857at 941.670 kb on + strand, within MIT1002_00857at 941.680 kb on + strand, within MIT1002_00857at 941.688 kb on - strand, within MIT1002_00857at 941.688 kb on - strand, within MIT1002_00857at 941.858 kb on + strand, within MIT1002_00857at 941.863 kb on + strand, within MIT1002_00857at 941.880 kb on + strand, within MIT1002_00857at 941.946 kb on + strand, within MIT1002_00857at 941.946 kb on + strand, within MIT1002_00857at 941.954 kb on - strand, within MIT1002_00857at 941.956 kb on - strand, within MIT1002_00857at 942.001 kb on - strand, within MIT1002_00857

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 7
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937,269 - +1.6
937,279 - +0.5
937,279 - +0.1
937,279 - -3.0
937,287 - +0.6
937,339 + -1.4
937,363 - -0.9
937,459 - MIT1002_00855 0.12 +0.2
937,569 + MIT1002_00855 0.27 -0.4
937,587 - MIT1002_00855 0.29 +0.4
937,601 + MIT1002_00855 0.31 -0.7
937,608 - MIT1002_00855 0.32 -1.4
937,608 - MIT1002_00855 0.32 +0.2
937,614 - MIT1002_00855 0.33 -0.2
937,619 - MIT1002_00855 0.33 +1.1
937,689 - MIT1002_00855 0.42 +2.1
937,717 + MIT1002_00855 0.46 -0.8
937,773 - MIT1002_00855 0.53 -0.6
937,827 - MIT1002_00855 0.61 +0.7
937,876 + MIT1002_00855 0.67 +0.4
937,884 - MIT1002_00855 0.68 +0.7
937,884 - MIT1002_00855 0.68 -1.3
937,987 + MIT1002_00855 0.81 +0.3
937,987 + MIT1002_00855 0.81 +1.4
937,987 + MIT1002_00855 0.81 +1.4
937,987 + MIT1002_00855 0.81 -0.1
937,987 + MIT1002_00855 0.81 +0.6
937,987 + MIT1002_00855 0.81 +1.4
937,987 + MIT1002_00855 0.81 -0.8
937,995 - MIT1002_00855 0.82 -1.0
937,995 - MIT1002_00855 0.82 -1.2
937,995 - MIT1002_00855 0.82 +1.8
937,995 - MIT1002_00855 0.82 +0.9
937,995 - MIT1002_00855 0.82 +0.6
937,995 - MIT1002_00855 0.82 +0.8
937,995 - MIT1002_00855 0.82 -1.5
937,995 - MIT1002_00855 0.82 -1.2
937,995 - MIT1002_00855 0.82 +2.4
937,995 - MIT1002_00855 0.82 -0.9
937,995 - MIT1002_00855 0.82 +2.0
937,995 - MIT1002_00855 0.82 +1.1
937,995 - MIT1002_00855 0.82 -2.6
937,995 - MIT1002_00855 0.82 -1.6
937,995 - MIT1002_00855 0.82 -0.2
937,995 - MIT1002_00855 0.82 +0.9
938,099 + +1.7
938,197 + -0.4
938,205 - -1.6
938,225 - -0.5
938,234 + +0.3
938,267 + -1.5
938,285 - +0.2
938,344 - +0.4
938,370 + +1.1
938,370 + +0.3
938,403 + +2.1
938,412 - -0.7
938,510 - MIT1002_00856 0.12 -0.8
938,577 + MIT1002_00856 0.15 +0.4
938,577 + MIT1002_00856 0.15 +2.2
938,579 + MIT1002_00856 0.15 +0.5
938,585 - MIT1002_00856 0.15 +3.3
938,597 + MIT1002_00856 0.15 +0.9
938,597 + MIT1002_00856 0.15 +0.9
938,597 + MIT1002_00856 0.15 -1.8
938,605 - MIT1002_00856 0.16 +1.2
938,605 - MIT1002_00856 0.16 +1.7
938,636 - MIT1002_00856 0.17 +0.9
938,653 + MIT1002_00856 0.17 +0.3
938,724 + MIT1002_00856 0.20 -0.4
938,730 + MIT1002_00856 0.20 +1.4
938,730 + MIT1002_00856 0.20 +1.8
938,764 - MIT1002_00856 0.21 +0.2
938,837 - MIT1002_00856 0.24 +0.6
938,837 - MIT1002_00856 0.24 +0.4
938,837 - MIT1002_00856 0.24 -0.9
938,839 + MIT1002_00856 0.24 +2.5
938,865 - MIT1002_00856 0.25 +1.4
938,889 + MIT1002_00856 0.26 +2.3
938,897 + MIT1002_00856 0.26 -0.9
938,897 - MIT1002_00856 0.26 +1.1
938,968 + MIT1002_00856 0.28 +1.6
938,968 + MIT1002_00856 0.28 +0.3
938,968 + MIT1002_00856 0.28 +0.3
938,968 + MIT1002_00856 0.28 +0.2
938,976 - MIT1002_00856 0.29 +0.7
938,976 - MIT1002_00856 0.29 +2.3
938,976 - MIT1002_00856 0.29 +0.4
938,976 - MIT1002_00856 0.29 -0.0
938,976 - MIT1002_00856 0.29 -1.2
938,976 - MIT1002_00856 0.29 +1.9
938,976 - MIT1002_00856 0.29 +0.4
938,976 - MIT1002_00856 0.29 +1.2
938,987 - MIT1002_00856 0.29 +1.8
939,006 + MIT1002_00856 0.30 +1.3
939,020 - MIT1002_00856 0.30 +1.1
939,151 + MIT1002_00856 0.35 +0.5
939,213 + MIT1002_00856 0.37 +0.3
939,221 - MIT1002_00856 0.37 -0.8
939,221 - MIT1002_00856 0.37 +1.0
939,255 + MIT1002_00856 0.38 +0.8
939,263 - MIT1002_00856 0.39 +1.5
939,263 - MIT1002_00856 0.39 +1.3
939,366 + MIT1002_00856 0.42 -0.0
939,381 + MIT1002_00856 0.43 +0.2
939,381 + MIT1002_00856 0.43 -1.4
939,389 - MIT1002_00856 0.43 +1.5
939,494 + MIT1002_00856 0.47 -1.1
939,512 - MIT1002_00856 0.47 +1.2
939,525 + MIT1002_00856 0.48 +0.6
939,595 + MIT1002_00856 0.50 -1.2
939,602 + MIT1002_00856 0.50 +0.4
939,692 + MIT1002_00856 0.53 +1.2
939,692 + MIT1002_00856 0.53 +1.0
939,922 + MIT1002_00856 0.61 +0.5
940,020 - MIT1002_00856 0.65 -0.2
940,020 - MIT1002_00856 0.65 -0.8
940,069 - MIT1002_00856 0.67 -0.3
940,128 + MIT1002_00856 0.69 +1.4
940,199 - MIT1002_00856 0.71 +0.8
940,222 - MIT1002_00856 0.72 +1.1
940,257 - MIT1002_00856 0.73 +1.0
940,272 - MIT1002_00856 0.74 +1.1
940,304 + MIT1002_00856 0.75 -0.4
940,314 + MIT1002_00856 0.75 +1.2
940,314 + MIT1002_00856 0.75 -1.3
940,322 - MIT1002_00856 0.75 -0.5
940,330 + MIT1002_00856 0.76 -1.3
940,332 - MIT1002_00856 0.76 +0.2
940,397 - MIT1002_00856 0.78 +0.6
940,421 + MIT1002_00856 0.79 +1.7
940,421 + MIT1002_00856 0.79 +1.7
940,424 - MIT1002_00856 0.79 +1.6
940,431 + MIT1002_00856 0.79 +2.3
940,447 - MIT1002_00856 0.80 -0.2
940,447 - MIT1002_00856 0.80 +0.2
940,470 + MIT1002_00856 0.80 +2.1
940,470 + MIT1002_00856 0.80 +1.2
940,470 + MIT1002_00856 0.80 +0.8
940,470 + MIT1002_00856 0.80 +0.9
940,470 + MIT1002_00856 0.80 +0.8
940,474 + MIT1002_00856 0.81 -2.0
940,474 + MIT1002_00856 0.81 +0.4
940,478 - MIT1002_00856 0.81 -0.2
940,478 - MIT1002_00856 0.81 +0.7
940,478 - MIT1002_00856 0.81 +1.2
940,478 - MIT1002_00856 0.81 +0.5
940,478 - MIT1002_00856 0.81 +0.3
940,495 - MIT1002_00856 0.81 -0.0
940,502 - MIT1002_00856 0.82 -0.8
940,521 - MIT1002_00856 0.82 +0.1
940,538 + MIT1002_00856 0.83 +1.0
940,538 + MIT1002_00856 0.83 +1.4
940,546 - MIT1002_00856 0.83 +0.8
940,546 - MIT1002_00856 0.83 +0.8
940,584 - MIT1002_00856 0.84 -2.2
940,584 - MIT1002_00856 0.84 +0.6
940,586 + MIT1002_00856 0.85 +1.6
940,605 + MIT1002_00856 0.85 +0.1
940,605 + MIT1002_00856 0.85 -0.9
940,613 - MIT1002_00856 0.85 +1.1
940,613 - MIT1002_00856 0.85 +0.2
940,613 - MIT1002_00856 0.85 -2.7
940,631 + MIT1002_00856 0.86 +0.8
940,631 + MIT1002_00856 0.86 +0.8
940,631 + MIT1002_00856 0.86 +0.1
940,631 + MIT1002_00856 0.86 +1.7
940,639 - MIT1002_00856 0.86 -1.0
940,639 - MIT1002_00856 0.86 -2.0
940,819 + +0.5
940,830 + +1.6
940,830 + -1.7
940,830 + +2.4
940,830 + +0.4
940,830 + +0.9
940,838 - +0.6
940,838 - +1.6
940,972 - +2.2
941,019 - +1.0
941,020 - -0.6
941,102 + +0.3
941,128 + -0.0
941,131 + -3.0
941,136 - +0.8
941,139 - -0.9
941,139 - +0.5
941,139 - -1.0
941,139 - -0.9
941,141 + +1.6
941,156 - MIT1002_00857 0.11 -0.1
941,169 + MIT1002_00857 0.12 +0.5
941,177 - MIT1002_00857 0.13 +1.0
941,177 - MIT1002_00857 0.13 +0.5
941,179 - MIT1002_00857 0.13 -0.1
941,195 + MIT1002_00857 0.14 -0.0
941,195 + MIT1002_00857 0.14 +0.7
941,275 + MIT1002_00857 0.21 +1.7
941,316 - MIT1002_00857 0.24 +0.3
941,395 + MIT1002_00857 0.31 +1.1
941,411 + MIT1002_00857 0.32 +0.4
941,440 + MIT1002_00857 0.35 +0.3
941,493 + MIT1002_00857 0.39 +1.3
941,506 - MIT1002_00857 0.41 +0.2
941,506 - MIT1002_00857 0.41 -1.4
941,573 - MIT1002_00857 0.46 +0.3
941,588 - MIT1002_00857 0.47 +0.3
941,614 - MIT1002_00857 0.50 -0.7
941,614 - MIT1002_00857 0.50 -0.8
941,670 + MIT1002_00857 0.54 -0.4
941,670 + MIT1002_00857 0.54 -1.4
941,670 + MIT1002_00857 0.54 +1.0
941,680 + MIT1002_00857 0.55 -0.6
941,688 - MIT1002_00857 0.56 +0.8
941,688 - MIT1002_00857 0.56 -0.0
941,858 + MIT1002_00857 0.70 +1.6
941,863 + MIT1002_00857 0.71 +0.1
941,880 + MIT1002_00857 0.72 +1.2
941,946 + MIT1002_00857 0.78 +1.5
941,946 + MIT1002_00857 0.78 -0.1
941,954 - MIT1002_00857 0.79 +0.4
941,956 - MIT1002_00857 0.79 -1.0
942,001 - MIT1002_00857 0.83 -0.0

Or see this region's nucleotide sequence