Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00688

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00686 and MIT1002_00687 are separated by 99 nucleotidesMIT1002_00687 and MIT1002_00688 are separated by 37 nucleotidesMIT1002_00688 and MIT1002_00689 are separated by 49 nucleotides MIT1002_00686: MIT1002_00686 - hypothetical protein, at 751,374 to 751,991 _00686 MIT1002_00687: MIT1002_00687 - ribosomal-protein-S5-alanine N-acetyltransferase, at 752,091 to 752,609 _00687 MIT1002_00688: MIT1002_00688 - Peptidyl-prolyl cis-trans isomerase A precursor, at 752,647 to 753,255 _00688 MIT1002_00689: MIT1002_00689 - Ribosomal RNA large subunit methyltransferase G, at 753,305 to 754,537 _00689 Position (kb) 752 753 754Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 751.762 kb on + strand, within MIT1002_00686at 751.762 kb on + strand, within MIT1002_00686at 751.762 kb on + strand, within MIT1002_00686at 751.773 kb on - strand, within MIT1002_00686at 751.781 kb on + strand, within MIT1002_00686at 751.802 kb on - strand, within MIT1002_00686at 751.825 kb on - strand, within MIT1002_00686at 751.838 kb on + strand, within MIT1002_00686at 751.840 kb on + strand, within MIT1002_00686at 751.940 kb on + strandat 751.945 kb on + strandat 751.945 kb on + strandat 751.953 kb on - strandat 752.045 kb on - strandat 752.083 kb on + strandat 752.091 kb on - strandat 752.131 kb on + strandat 752.162 kb on - strand, within MIT1002_00687at 752.239 kb on + strand, within MIT1002_00687at 752.260 kb on + strand, within MIT1002_00687at 752.277 kb on + strand, within MIT1002_00687at 752.277 kb on + strand, within MIT1002_00687at 752.277 kb on + strand, within MIT1002_00687at 752.284 kb on + strand, within MIT1002_00687at 752.285 kb on - strand, within MIT1002_00687at 752.285 kb on - strand, within MIT1002_00687at 752.324 kb on + strand, within MIT1002_00687at 752.340 kb on + strand, within MIT1002_00687at 752.381 kb on - strand, within MIT1002_00687at 752.393 kb on + strand, within MIT1002_00687at 752.412 kb on + strand, within MIT1002_00687at 752.419 kb on - strand, within MIT1002_00687at 752.420 kb on - strand, within MIT1002_00687at 752.430 kb on + strand, within MIT1002_00687at 752.437 kb on + strand, within MIT1002_00687at 752.439 kb on + strand, within MIT1002_00687at 752.439 kb on + strand, within MIT1002_00687at 752.439 kb on + strand, within MIT1002_00687at 752.447 kb on - strand, within MIT1002_00687at 752.447 kb on - strand, within MIT1002_00687at 752.463 kb on - strand, within MIT1002_00687at 752.489 kb on - strand, within MIT1002_00687at 752.500 kb on + strand, within MIT1002_00687at 752.510 kb on + strand, within MIT1002_00687at 752.515 kb on + strand, within MIT1002_00687at 752.527 kb on + strand, within MIT1002_00687at 752.535 kb on - strand, within MIT1002_00687at 752.544 kb on - strand, within MIT1002_00687at 752.585 kb on + strandat 752.619 kb on + strandat 752.619 kb on - strandat 752.709 kb on + strand, within MIT1002_00688at 752.797 kb on + strand, within MIT1002_00688at 752.807 kb on + strand, within MIT1002_00688at 752.815 kb on - strand, within MIT1002_00688at 752.879 kb on + strand, within MIT1002_00688at 752.889 kb on + strand, within MIT1002_00688at 752.897 kb on - strand, within MIT1002_00688at 752.968 kb on - strand, within MIT1002_00688at 753.050 kb on + strand, within MIT1002_00688at 753.076 kb on + strand, within MIT1002_00688at 753.084 kb on + strand, within MIT1002_00688at 753.097 kb on - strand, within MIT1002_00688at 753.097 kb on - strand, within MIT1002_00688at 753.143 kb on + strand, within MIT1002_00688at 753.151 kb on - strand, within MIT1002_00688at 753.165 kb on + strand, within MIT1002_00688at 753.303 kb on + strandat 753.320 kb on + strandat 753.347 kb on + strandat 753.393 kb on + strandat 753.548 kb on - strand, within MIT1002_00689at 753.634 kb on + strand, within MIT1002_00689at 753.636 kb on - strand, within MIT1002_00689at 753.656 kb on + strand, within MIT1002_00689at 753.713 kb on + strand, within MIT1002_00689at 753.713 kb on + strand, within MIT1002_00689at 753.714 kb on - strand, within MIT1002_00689at 753.734 kb on + strand, within MIT1002_00689at 753.742 kb on - strand, within MIT1002_00689at 753.751 kb on + strand, within MIT1002_00689at 753.793 kb on + strand, within MIT1002_00689at 753.801 kb on - strand, within MIT1002_00689at 753.801 kb on - strand, within MIT1002_00689at 753.872 kb on - strand, within MIT1002_00689at 753.893 kb on - strand, within MIT1002_00689at 753.893 kb on - strand, within MIT1002_00689at 753.967 kb on - strand, within MIT1002_00689at 754.096 kb on + strand, within MIT1002_00689at 754.096 kb on + strand, within MIT1002_00689at 754.104 kb on - strand, within MIT1002_00689at 754.104 kb on - strand, within MIT1002_00689at 754.113 kb on + strand, within MIT1002_00689at 754.153 kb on + strand, within MIT1002_00689at 754.172 kb on + strand, within MIT1002_00689at 754.232 kb on + strand, within MIT1002_00689at 754.246 kb on - strand, within MIT1002_00689

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 7
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751,762 + MIT1002_00686 0.63 -0.1
751,762 + MIT1002_00686 0.63 +0.1
751,762 + MIT1002_00686 0.63 +0.5
751,773 - MIT1002_00686 0.65 +2.0
751,781 + MIT1002_00686 0.66 +1.0
751,802 - MIT1002_00686 0.69 +0.3
751,825 - MIT1002_00686 0.73 -0.2
751,838 + MIT1002_00686 0.75 +0.3
751,840 + MIT1002_00686 0.75 -1.5
751,940 + -0.5
751,945 + +0.5
751,945 + -0.8
751,953 - -0.0
752,045 - -1.6
752,083 + -1.7
752,091 - +1.7
752,131 + -0.6
752,162 - MIT1002_00687 0.14 +1.0
752,239 + MIT1002_00687 0.29 +1.1
752,260 + MIT1002_00687 0.33 -1.0
752,277 + MIT1002_00687 0.36 -1.7
752,277 + MIT1002_00687 0.36 -0.0
752,277 + MIT1002_00687 0.36 -0.9
752,284 + MIT1002_00687 0.37 +1.9
752,285 - MIT1002_00687 0.37 +0.7
752,285 - MIT1002_00687 0.37 +0.6
752,324 + MIT1002_00687 0.45 +0.4
752,340 + MIT1002_00687 0.48 +0.6
752,381 - MIT1002_00687 0.56 -3.5
752,393 + MIT1002_00687 0.58 +1.4
752,412 + MIT1002_00687 0.62 +0.4
752,419 - MIT1002_00687 0.63 -2.1
752,420 - MIT1002_00687 0.63 +0.2
752,430 + MIT1002_00687 0.65 +0.1
752,437 + MIT1002_00687 0.67 -0.2
752,439 + MIT1002_00687 0.67 +1.3
752,439 + MIT1002_00687 0.67 -0.9
752,439 + MIT1002_00687 0.67 -1.5
752,447 - MIT1002_00687 0.69 -2.8
752,447 - MIT1002_00687 0.69 -0.8
752,463 - MIT1002_00687 0.72 -0.1
752,489 - MIT1002_00687 0.77 -2.3
752,500 + MIT1002_00687 0.79 -1.0
752,510 + MIT1002_00687 0.81 +0.5
752,515 + MIT1002_00687 0.82 -0.4
752,527 + MIT1002_00687 0.84 +1.7
752,535 - MIT1002_00687 0.86 +2.0
752,544 - MIT1002_00687 0.87 -0.3
752,585 + +0.1
752,619 + -1.3
752,619 - -0.8
752,709 + MIT1002_00688 0.10 +0.3
752,797 + MIT1002_00688 0.25 +0.2
752,807 + MIT1002_00688 0.26 +1.5
752,815 - MIT1002_00688 0.28 +1.0
752,879 + MIT1002_00688 0.38 -1.2
752,889 + MIT1002_00688 0.40 -0.5
752,897 - MIT1002_00688 0.41 +0.4
752,968 - MIT1002_00688 0.53 +0.0
753,050 + MIT1002_00688 0.66 -1.6
753,076 + MIT1002_00688 0.70 -0.1
753,084 + MIT1002_00688 0.72 +2.4
753,097 - MIT1002_00688 0.74 -0.6
753,097 - MIT1002_00688 0.74 -0.5
753,143 + MIT1002_00688 0.81 +0.8
753,151 - MIT1002_00688 0.83 +0.9
753,165 + MIT1002_00688 0.85 +1.6
753,303 + -0.5
753,320 + +0.7
753,347 + +1.5
753,393 + -0.5
753,548 - MIT1002_00689 0.20 +1.0
753,634 + MIT1002_00689 0.27 +1.9
753,636 - MIT1002_00689 0.27 +1.0
753,656 + MIT1002_00689 0.28 -1.0
753,713 + MIT1002_00689 0.33 +3.1
753,713 + MIT1002_00689 0.33 -0.7
753,714 - MIT1002_00689 0.33 +0.2
753,734 + MIT1002_00689 0.35 +0.2
753,742 - MIT1002_00689 0.35 +0.4
753,751 + MIT1002_00689 0.36 -0.3
753,793 + MIT1002_00689 0.40 -1.9
753,801 - MIT1002_00689 0.40 +3.3
753,801 - MIT1002_00689 0.40 -0.5
753,872 - MIT1002_00689 0.46 +0.3
753,893 - MIT1002_00689 0.48 +0.2
753,893 - MIT1002_00689 0.48 +1.3
753,967 - MIT1002_00689 0.54 +0.3
754,096 + MIT1002_00689 0.64 +0.8
754,096 + MIT1002_00689 0.64 +0.3
754,104 - MIT1002_00689 0.65 +0.8
754,104 - MIT1002_00689 0.65 +0.5
754,113 + MIT1002_00689 0.66 +0.5
754,153 + MIT1002_00689 0.69 -1.1
754,172 + MIT1002_00689 0.70 +0.6
754,232 + MIT1002_00689 0.75 +0.2
754,246 - MIT1002_00689 0.76 -2.0

Or see this region's nucleotide sequence