Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00648 and MIT1002_00649 are separated by 3 nucleotides MIT1002_00649 and MIT1002_00650 are separated by 4 nucleotides MIT1002_00650 and MIT1002_00651 are separated by 8 nucleotides
MIT1002_00648: MIT1002_00648 - Phosphoenolpyruvate-protein phosphotransferase, at 702,840 to 705,158
_00648
MIT1002_00649: MIT1002_00649 - Sulfite exporter TauE/SafE, at 705,162 to 705,968
_00649
MIT1002_00650: MIT1002_00650 - Prolipoprotein diacylglyceryl transferase, at 705,973 to 706,785
_00650
MIT1002_00651: MIT1002_00651 - Thymidylate synthase, at 706,794 to 707,627
_00651
Position (kb) 705
706 Strain fitness (log2 ratio) -2
-1
0
1
2 at 704.180 kb on - strand, within MIT1002_00648 at 704.271 kb on + strand, within MIT1002_00648 at 704.272 kb on + strand, within MIT1002_00648 at 704.272 kb on + strand, within MIT1002_00648 at 704.279 kb on - strand, within MIT1002_00648 at 704.280 kb on - strand, within MIT1002_00648 at 704.280 kb on - strand, within MIT1002_00648 at 704.287 kb on - strand, within MIT1002_00648 at 704.419 kb on + strand, within MIT1002_00648 at 704.424 kb on + strand, within MIT1002_00648 at 704.479 kb on + strand, within MIT1002_00648 at 704.485 kb on + strand, within MIT1002_00648 at 704.493 kb on - strand, within MIT1002_00648 at 704.516 kb on + strand, within MIT1002_00648 at 704.539 kb on + strand, within MIT1002_00648 at 704.544 kb on + strand, within MIT1002_00648 at 704.547 kb on - strand, within MIT1002_00648 at 704.547 kb on - strand, within MIT1002_00648 at 704.552 kb on - strand, within MIT1002_00648 at 704.603 kb on - strand, within MIT1002_00648 at 704.665 kb on - strand, within MIT1002_00648 at 704.676 kb on - strand, within MIT1002_00648 at 704.806 kb on - strand, within MIT1002_00648 at 704.834 kb on - strand, within MIT1002_00648 at 704.964 kb on + strand at 704.997 kb on - strand at 704.997 kb on - strand at 705.040 kb on + strand at 705.043 kb on - strand at 705.046 kb on + strand at 705.070 kb on + strand at 705.084 kb on + strand at 705.122 kb on - strand at 705.122 kb on - strand at 705.183 kb on + strand at 705.183 kb on - strand at 705.191 kb on - strand at 705.288 kb on + strand, within MIT1002_00649 at 705.305 kb on - strand, within MIT1002_00649 at 705.403 kb on - strand, within MIT1002_00649 at 705.419 kb on + strand, within MIT1002_00649 at 705.419 kb on + strand, within MIT1002_00649 at 705.427 kb on - strand, within MIT1002_00649 at 705.427 kb on - strand, within MIT1002_00649 at 705.429 kb on + strand, within MIT1002_00649 at 705.429 kb on + strand, within MIT1002_00649 at 705.437 kb on - strand, within MIT1002_00649 at 705.437 kb on - strand, within MIT1002_00649 at 705.437 kb on - strand, within MIT1002_00649 at 705.437 kb on - strand, within MIT1002_00649 at 705.437 kb on - strand, within MIT1002_00649 at 705.494 kb on + strand, within MIT1002_00649 at 705.494 kb on + strand, within MIT1002_00649 at 705.502 kb on - strand, within MIT1002_00649 at 705.623 kb on - strand, within MIT1002_00649 at 705.623 kb on - strand, within MIT1002_00649 at 705.638 kb on - strand, within MIT1002_00649 at 705.656 kb on + strand, within MIT1002_00649 at 705.754 kb on + strand, within MIT1002_00649 at 705.787 kb on + strand, within MIT1002_00649 at 705.799 kb on + strand, within MIT1002_00649 at 705.837 kb on + strand, within MIT1002_00649 at 705.844 kb on + strand, within MIT1002_00649 at 705.844 kb on + strand, within MIT1002_00649 at 705.844 kb on + strand, within MIT1002_00649 at 705.844 kb on + strand, within MIT1002_00649 at 705.863 kb on + strand, within MIT1002_00649 at 705.868 kb on + strand, within MIT1002_00649 at 705.868 kb on + strand, within MIT1002_00649 at 706.727 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 7 remove 704,180 - MIT1002_00648 0.58 -1.6 704,271 + MIT1002_00648 0.62 -1.8 704,272 + MIT1002_00648 0.62 +0.2 704,272 + MIT1002_00648 0.62 -0.2 704,279 - MIT1002_00648 0.62 -1.1 704,280 - MIT1002_00648 0.62 -0.0 704,280 - MIT1002_00648 0.62 -0.7 704,287 - MIT1002_00648 0.62 +1.5 704,419 + MIT1002_00648 0.68 -0.7 704,424 + MIT1002_00648 0.68 -2.0 704,479 + MIT1002_00648 0.71 -2.2 704,485 + MIT1002_00648 0.71 -1.0 704,493 - MIT1002_00648 0.71 -2.6 704,516 + MIT1002_00648 0.72 -2.5 704,539 + MIT1002_00648 0.73 -0.4 704,544 + MIT1002_00648 0.73 -0.8 704,547 - MIT1002_00648 0.74 -2.7 704,547 - MIT1002_00648 0.74 -0.8 704,552 - MIT1002_00648 0.74 -0.4 704,603 - MIT1002_00648 0.76 -2.0 704,665 - MIT1002_00648 0.79 -0.2 704,676 - MIT1002_00648 0.79 -0.9 704,806 - MIT1002_00648 0.85 -2.5 704,834 - MIT1002_00648 0.86 +2.0 704,964 + -1.2 704,997 - -1.4 704,997 - -1.9 705,040 + -2.5 705,043 - +0.4 705,046 + -0.0 705,070 + -1.1 705,084 + +0.3 705,122 - +0.8 705,122 - -0.4 705,183 + +0.2 705,183 - -0.8 705,191 - -1.7 705,288 + MIT1002_00649 0.16 -1.8 705,305 - MIT1002_00649 0.18 +1.0 705,403 - MIT1002_00649 0.30 +0.8 705,419 + MIT1002_00649 0.32 -0.6 705,419 + MIT1002_00649 0.32 -2.1 705,427 - MIT1002_00649 0.33 +0.8 705,427 - MIT1002_00649 0.33 -0.5 705,429 + MIT1002_00649 0.33 -0.9 705,429 + MIT1002_00649 0.33 +0.1 705,437 - MIT1002_00649 0.34 -1.9 705,437 - MIT1002_00649 0.34 +0.2 705,437 - MIT1002_00649 0.34 -1.5 705,437 - MIT1002_00649 0.34 -0.0 705,437 - MIT1002_00649 0.34 -1.8 705,494 + MIT1002_00649 0.41 -0.4 705,494 + MIT1002_00649 0.41 +1.1 705,502 - MIT1002_00649 0.42 +0.8 705,623 - MIT1002_00649 0.57 -0.2 705,623 - MIT1002_00649 0.57 +1.4 705,638 - MIT1002_00649 0.59 -1.5 705,656 + MIT1002_00649 0.61 +1.6 705,754 + MIT1002_00649 0.73 +0.5 705,787 + MIT1002_00649 0.77 +0.0 705,799 + MIT1002_00649 0.79 -2.0 705,837 + MIT1002_00649 0.84 -2.1 705,844 + MIT1002_00649 0.85 -0.1 705,844 + MIT1002_00649 0.85 +0.1 705,844 + MIT1002_00649 0.85 +0.5 705,844 + MIT1002_00649 0.85 -2.1 705,863 + MIT1002_00649 0.87 -0.9 705,868 + MIT1002_00649 0.87 -0.9 705,868 + MIT1002_00649 0.87 -2.1 706,727 + -1.0
Or see this region's nucleotide sequence