Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00562 and MIT1002_00563 are separated by 149 nucleotides MIT1002_00563 and MIT1002_00564 are separated by 180 nucleotides MIT1002_00564 and MIT1002_00565 are separated by 449 nucleotides
MIT1002_00562: MIT1002_00562 - hypothetical protein, at 607,431 to 608,219
_00562
MIT1002_00563: MIT1002_00563 - hypothetical protein, at 608,369 to 608,734
_00563
MIT1002_00564: MIT1002_00564 - Transposase IS116/IS110/IS902 family protein, at 608,915 to 609,964
_00564
MIT1002_00565: MIT1002_00565 - hypothetical protein, at 610,414 to 611,118
_00565
Position (kb) 608
609
610 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 607.915 kb on + strand, within MIT1002_00562 at 607.955 kb on - strand, within MIT1002_00562 at 608.061 kb on + strand, within MIT1002_00562 at 608.109 kb on + strand, within MIT1002_00562 at 608.109 kb on + strand, within MIT1002_00562 at 608.116 kb on + strand, within MIT1002_00562 at 608.180 kb on - strand at 608.185 kb on - strand at 608.245 kb on + strand at 608.253 kb on - strand at 608.253 kb on - strand at 608.253 kb on - strand at 608.253 kb on - strand at 608.254 kb on - strand at 608.303 kb on - strand at 608.351 kb on + strand at 608.359 kb on - strand at 608.367 kb on + strand at 608.448 kb on + strand, within MIT1002_00563 at 608.448 kb on + strand, within MIT1002_00563 at 608.456 kb on - strand, within MIT1002_00563 at 608.456 kb on - strand, within MIT1002_00563 at 608.588 kb on - strand, within MIT1002_00563 at 608.636 kb on + strand, within MIT1002_00563 at 608.636 kb on + strand, within MIT1002_00563 at 608.644 kb on - strand, within MIT1002_00563 at 608.758 kb on - strand at 608.806 kb on - strand at 608.825 kb on - strand at 610.479 kb on - strand at 610.481 kb on + strand at 610.515 kb on - strand, within MIT1002_00565 at 610.522 kb on + strand, within MIT1002_00565 at 610.523 kb on - strand, within MIT1002_00565 at 610.530 kb on - strand, within MIT1002_00565 at 610.532 kb on + strand, within MIT1002_00565 at 610.939 kb on - strand, within MIT1002_00565 at 610.946 kb on + strand, within MIT1002_00565
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 7 remove 607,915 + MIT1002_00562 0.61 -2.8 607,955 - MIT1002_00562 0.66 -0.1 608,061 + MIT1002_00562 0.80 -1.9 608,109 + MIT1002_00562 0.86 -0.2 608,109 + MIT1002_00562 0.86 -3.8 608,116 + MIT1002_00562 0.87 -0.1 608,180 - +0.2 608,185 - +2.0 608,245 + +1.5 608,253 - +0.6 608,253 - -0.5 608,253 - -0.8 608,253 - +0.7 608,254 - -0.8 608,303 - -2.1 608,351 + -1.4 608,359 - +0.7 608,367 + +1.2 608,448 + MIT1002_00563 0.22 +1.2 608,448 + MIT1002_00563 0.22 -0.1 608,456 - MIT1002_00563 0.24 +0.2 608,456 - MIT1002_00563 0.24 -0.4 608,588 - MIT1002_00563 0.60 -0.1 608,636 + MIT1002_00563 0.73 -1.2 608,636 + MIT1002_00563 0.73 -0.8 608,644 - MIT1002_00563 0.75 -0.1 608,758 - -1.3 608,806 - +1.4 608,825 - +0.0 610,479 - -0.3 610,481 + +2.8 610,515 - MIT1002_00565 0.14 -0.4 610,522 + MIT1002_00565 0.15 +1.5 610,523 - MIT1002_00565 0.15 +0.8 610,530 - MIT1002_00565 0.16 +2.0 610,532 + MIT1002_00565 0.17 +0.8 610,939 - MIT1002_00565 0.74 +1.8 610,946 + MIT1002_00565 0.75 -0.3
Or see this region's nucleotide sequence