Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00500 and MIT1002_00501 are separated by 147 nucleotides MIT1002_00501 and MIT1002_00502 are separated by 233 nucleotides MIT1002_00502 and MIT1002_00503 are separated by 273 nucleotides
MIT1002_00500: MIT1002_00500 - putative PEP-CTERM system TPR-repeat lipoprotein, at 543,882 to 545,450
_00500
MIT1002_00501: MIT1002_00501 - hypothetical protein, at 545,598 to 546,059
_00501
MIT1002_00502: MIT1002_00502 - Protein of unknown function, DUF, at 546,293 to 546,670
_00502
MIT1002_00503: MIT1002_00503 - Acetolactate synthase isozyme 3 large subunit, at 546,944 to 548,662
_00503
Position (kb) 546
547 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 545.296 kb on - strand at 545.296 kb on - strand at 545.416 kb on + strand at 545.477 kb on - strand at 545.669 kb on + strand, within MIT1002_00501 at 545.780 kb on - strand, within MIT1002_00501 at 545.801 kb on - strand, within MIT1002_00501 at 545.837 kb on - strand, within MIT1002_00501 at 545.993 kb on + strand, within MIT1002_00501 at 545.998 kb on - strand, within MIT1002_00501 at 546.036 kb on - strand at 546.106 kb on + strand at 546.179 kb on + strand at 546.285 kb on + strand at 546.286 kb on + strand at 546.287 kb on + strand at 546.295 kb on - strand at 546.295 kb on - strand at 546.402 kb on - strand, within MIT1002_00502 at 546.417 kb on - strand, within MIT1002_00502 at 546.510 kb on + strand, within MIT1002_00502 at 546.510 kb on - strand, within MIT1002_00502 at 546.523 kb on + strand, within MIT1002_00502 at 546.610 kb on - strand, within MIT1002_00502 at 546.671 kb on + strand at 546.892 kb on - strand at 546.903 kb on - strand at 546.915 kb on + strand at 546.917 kb on + strand at 546.932 kb on + strand at 546.965 kb on + strand at 547.020 kb on - strand at 547.071 kb on - strand at 547.117 kb on - strand, within MIT1002_00503 at 547.129 kb on - strand, within MIT1002_00503 at 547.154 kb on + strand, within MIT1002_00503 at 547.162 kb on - strand, within MIT1002_00503 at 547.162 kb on - strand, within MIT1002_00503 at 547.164 kb on + strand, within MIT1002_00503 at 547.172 kb on - strand, within MIT1002_00503 at 547.172 kb on - strand, within MIT1002_00503 at 547.196 kb on + strand, within MIT1002_00503 at 547.196 kb on - strand, within MIT1002_00503 at 547.231 kb on - strand, within MIT1002_00503 at 547.297 kb on + strand, within MIT1002_00503 at 547.305 kb on + strand, within MIT1002_00503 at 547.313 kb on - strand, within MIT1002_00503 at 547.358 kb on - strand, within MIT1002_00503 at 547.483 kb on + strand, within MIT1002_00503 at 547.518 kb on + strand, within MIT1002_00503 at 547.552 kb on + strand, within MIT1002_00503 at 547.552 kb on + strand, within MIT1002_00503 at 547.552 kb on + strand, within MIT1002_00503 at 547.560 kb on - strand, within MIT1002_00503 at 547.566 kb on + strand, within MIT1002_00503 at 547.569 kb on - strand, within MIT1002_00503 at 547.576 kb on + strand, within MIT1002_00503 at 547.579 kb on - strand, within MIT1002_00503 at 547.584 kb on - strand, within MIT1002_00503 at 547.639 kb on + strand, within MIT1002_00503 at 547.649 kb on + strand, within MIT1002_00503
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 7 remove 545,296 - -1.2 545,296 - -1.9 545,416 + +1.2 545,477 - +1.3 545,669 + MIT1002_00501 0.15 +0.3 545,780 - MIT1002_00501 0.39 -1.2 545,801 - MIT1002_00501 0.44 -0.0 545,837 - MIT1002_00501 0.52 -1.3 545,993 + MIT1002_00501 0.85 -0.2 545,998 - MIT1002_00501 0.87 +0.3 546,036 - -2.1 546,106 + +0.1 546,179 + -0.6 546,285 + +1.1 546,286 + +0.8 546,287 + -1.0 546,295 - -1.4 546,295 - -0.1 546,402 - MIT1002_00502 0.29 -1.9 546,417 - MIT1002_00502 0.33 -2.2 546,510 + MIT1002_00502 0.57 -0.1 546,510 - MIT1002_00502 0.57 -0.3 546,523 + MIT1002_00502 0.61 -0.2 546,610 - MIT1002_00502 0.84 -0.9 546,671 + +0.2 546,892 - -0.9 546,903 - -1.3 546,915 + -4.9 546,917 + -3.0 546,932 + -2.0 546,965 + -4.0 547,020 - -6.8 547,071 - -1.0 547,117 - MIT1002_00503 0.10 -1.8 547,129 - MIT1002_00503 0.11 -1.5 547,154 + MIT1002_00503 0.12 -0.4 547,162 - MIT1002_00503 0.13 -2.7 547,162 - MIT1002_00503 0.13 -2.5 547,164 + MIT1002_00503 0.13 -2.7 547,172 - MIT1002_00503 0.13 -4.9 547,172 - MIT1002_00503 0.13 -0.0 547,196 + MIT1002_00503 0.15 -5.1 547,196 - MIT1002_00503 0.15 -3.9 547,231 - MIT1002_00503 0.17 -4.4 547,297 + MIT1002_00503 0.21 -2.0 547,305 + MIT1002_00503 0.21 -3.1 547,313 - MIT1002_00503 0.21 -5.3 547,358 - MIT1002_00503 0.24 -2.1 547,483 + MIT1002_00503 0.31 -3.0 547,518 + MIT1002_00503 0.33 -1.3 547,552 + MIT1002_00503 0.35 -1.8 547,552 + MIT1002_00503 0.35 -1.9 547,552 + MIT1002_00503 0.35 -1.8 547,560 - MIT1002_00503 0.36 -1.8 547,566 + MIT1002_00503 0.36 -3.3 547,569 - MIT1002_00503 0.36 -0.0 547,576 + MIT1002_00503 0.37 -4.4 547,579 - MIT1002_00503 0.37 -2.7 547,584 - MIT1002_00503 0.37 -2.2 547,639 + MIT1002_00503 0.40 -3.3 547,649 + MIT1002_00503 0.41 -7.3
Or see this region's nucleotide sequence