Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00419

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00418 and MIT1002_00419 are separated by 167 nucleotidesMIT1002_00419 and MIT1002_00420 are separated by 183 nucleotides MIT1002_00418: MIT1002_00418 - hypothetical protein, at 450,882 to 452,210 _00418 MIT1002_00419: MIT1002_00419 - Putative gamma-glutamyltransferase YwrD, at 452,378 to 454,069 _00419 MIT1002_00420: MIT1002_00420 - putative deferrochelatase/peroxidase YfeX, at 454,253 to 455,179 _00420 Position (kb) 452 453 454 455Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 452.214 kb on + strandat 452.275 kb on - strandat 452.300 kb on - strandat 452.309 kb on + strandat 452.309 kb on + strandat 452.317 kb on - strandat 452.388 kb on - strandat 452.390 kb on - strandat 452.431 kb on - strandat 452.446 kb on - strandat 452.483 kb on - strandat 452.547 kb on + strandat 452.573 kb on - strand, within MIT1002_00419at 452.612 kb on - strand, within MIT1002_00419at 452.685 kb on + strand, within MIT1002_00419at 452.685 kb on + strand, within MIT1002_00419at 452.685 kb on + strand, within MIT1002_00419at 452.706 kb on + strand, within MIT1002_00419at 452.788 kb on + strand, within MIT1002_00419at 452.806 kb on - strand, within MIT1002_00419at 452.808 kb on + strand, within MIT1002_00419at 452.839 kb on + strand, within MIT1002_00419at 452.844 kb on + strand, within MIT1002_00419at 452.845 kb on - strand, within MIT1002_00419at 452.847 kb on - strand, within MIT1002_00419at 452.854 kb on + strand, within MIT1002_00419at 452.862 kb on - strand, within MIT1002_00419at 452.862 kb on - strand, within MIT1002_00419at 452.909 kb on + strand, within MIT1002_00419at 453.024 kb on - strand, within MIT1002_00419at 453.188 kb on - strand, within MIT1002_00419at 453.203 kb on - strand, within MIT1002_00419at 453.203 kb on - strand, within MIT1002_00419at 453.203 kb on - strand, within MIT1002_00419at 453.212 kb on - strand, within MIT1002_00419at 453.224 kb on + strand, within MIT1002_00419at 453.224 kb on + strand, within MIT1002_00419at 453.239 kb on - strand, within MIT1002_00419at 453.268 kb on + strand, within MIT1002_00419at 453.287 kb on + strand, within MIT1002_00419at 453.287 kb on + strand, within MIT1002_00419at 453.292 kb on + strand, within MIT1002_00419at 453.295 kb on - strand, within MIT1002_00419at 453.316 kb on - strand, within MIT1002_00419at 453.316 kb on - strand, within MIT1002_00419at 453.358 kb on + strand, within MIT1002_00419at 453.490 kb on + strand, within MIT1002_00419at 453.525 kb on + strand, within MIT1002_00419at 453.574 kb on - strand, within MIT1002_00419at 453.580 kb on - strand, within MIT1002_00419at 453.709 kb on + strand, within MIT1002_00419at 453.719 kb on + strand, within MIT1002_00419at 453.824 kb on + strand, within MIT1002_00419at 453.832 kb on - strand, within MIT1002_00419at 453.832 kb on - strand, within MIT1002_00419at 453.845 kb on + strand, within MIT1002_00419at 453.853 kb on - strand, within MIT1002_00419at 453.858 kb on - strand, within MIT1002_00419at 454.006 kb on + strandat 454.006 kb on + strandat 454.014 kb on - strandat 454.065 kb on + strandat 454.076 kb on - strandat 454.097 kb on + strandat 454.144 kb on + strandat 454.144 kb on - strandat 454.217 kb on + strandat 454.225 kb on - strandat 454.231 kb on + strandat 454.247 kb on - strandat 454.273 kb on + strandat 454.281 kb on - strandat 454.281 kb on - strandat 454.303 kb on + strandat 454.303 kb on + strandat 454.453 kb on + strand, within MIT1002_00420at 454.459 kb on - strand, within MIT1002_00420at 454.590 kb on + strand, within MIT1002_00420at 454.647 kb on + strand, within MIT1002_00420at 454.647 kb on + strand, within MIT1002_00420at 454.665 kb on + strand, within MIT1002_00420at 454.665 kb on + strand, within MIT1002_00420at 454.673 kb on - strand, within MIT1002_00420at 454.680 kb on - strand, within MIT1002_00420at 454.778 kb on - strand, within MIT1002_00420at 454.799 kb on + strand, within MIT1002_00420at 454.807 kb on - strand, within MIT1002_00420at 454.815 kb on - strand, within MIT1002_00420at 454.905 kb on + strand, within MIT1002_00420at 454.912 kb on + strand, within MIT1002_00420at 454.920 kb on - strand, within MIT1002_00420at 454.955 kb on + strand, within MIT1002_00420at 454.982 kb on - strand, within MIT1002_00420at 454.999 kb on - strand, within MIT1002_00420at 455.028 kb on + strand, within MIT1002_00420at 455.028 kb on + strand, within MIT1002_00420at 455.057 kb on - strand, within MIT1002_00420

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 7
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452,214 + +0.6
452,275 - +0.4
452,300 - -2.7
452,309 + +0.4
452,309 + -0.2
452,317 - +0.2
452,388 - -2.2
452,390 - +0.8
452,431 - +2.6
452,446 - -1.8
452,483 - +0.5
452,547 + -0.6
452,573 - MIT1002_00419 0.12 -0.6
452,612 - MIT1002_00419 0.14 -1.0
452,685 + MIT1002_00419 0.18 +0.4
452,685 + MIT1002_00419 0.18 -1.4
452,685 + MIT1002_00419 0.18 -1.6
452,706 + MIT1002_00419 0.19 +0.4
452,788 + MIT1002_00419 0.24 -2.3
452,806 - MIT1002_00419 0.25 -1.3
452,808 + MIT1002_00419 0.25 +0.8
452,839 + MIT1002_00419 0.27 -0.1
452,844 + MIT1002_00419 0.28 +0.7
452,845 - MIT1002_00419 0.28 -1.8
452,847 - MIT1002_00419 0.28 +0.4
452,854 + MIT1002_00419 0.28 -0.6
452,862 - MIT1002_00419 0.29 +1.8
452,862 - MIT1002_00419 0.29 -0.4
452,909 + MIT1002_00419 0.31 -3.1
453,024 - MIT1002_00419 0.38 +0.2
453,188 - MIT1002_00419 0.48 +0.1
453,203 - MIT1002_00419 0.49 +0.3
453,203 - MIT1002_00419 0.49 +0.2
453,203 - MIT1002_00419 0.49 +1.1
453,212 - MIT1002_00419 0.49 -0.4
453,224 + MIT1002_00419 0.50 -0.4
453,224 + MIT1002_00419 0.50 -2.2
453,239 - MIT1002_00419 0.51 -2.5
453,268 + MIT1002_00419 0.53 -0.9
453,287 + MIT1002_00419 0.54 -1.5
453,287 + MIT1002_00419 0.54 +1.2
453,292 + MIT1002_00419 0.54 +1.2
453,295 - MIT1002_00419 0.54 -0.3
453,316 - MIT1002_00419 0.55 +0.1
453,316 - MIT1002_00419 0.55 +1.3
453,358 + MIT1002_00419 0.58 +0.4
453,490 + MIT1002_00419 0.66 -0.6
453,525 + MIT1002_00419 0.68 +1.0
453,574 - MIT1002_00419 0.71 +1.5
453,580 - MIT1002_00419 0.71 +0.0
453,709 + MIT1002_00419 0.79 +0.4
453,719 + MIT1002_00419 0.79 -0.9
453,824 + MIT1002_00419 0.85 -0.6
453,832 - MIT1002_00419 0.86 -1.7
453,832 - MIT1002_00419 0.86 +0.2
453,845 + MIT1002_00419 0.87 +0.0
453,853 - MIT1002_00419 0.87 +0.3
453,858 - MIT1002_00419 0.87 -0.6
454,006 + +0.4
454,006 + +0.2
454,014 - +2.3
454,065 + +0.2
454,076 - -0.6
454,097 + -1.8
454,144 + +0.4
454,144 - +0.6
454,217 + +0.5
454,225 - -0.7
454,231 + -0.1
454,247 - -0.9
454,273 + -1.4
454,281 - -1.3
454,281 - +0.3
454,303 + +1.2
454,303 + -0.2
454,453 + MIT1002_00420 0.22 -0.1
454,459 - MIT1002_00420 0.22 +0.5
454,590 + MIT1002_00420 0.36 -0.4
454,647 + MIT1002_00420 0.43 -0.6
454,647 + MIT1002_00420 0.43 -0.1
454,665 + MIT1002_00420 0.44 -0.3
454,665 + MIT1002_00420 0.44 -1.2
454,673 - MIT1002_00420 0.45 -1.1
454,680 - MIT1002_00420 0.46 +1.0
454,778 - MIT1002_00420 0.57 -1.1
454,799 + MIT1002_00420 0.59 +1.2
454,807 - MIT1002_00420 0.60 -0.6
454,815 - MIT1002_00420 0.61 +0.1
454,905 + MIT1002_00420 0.70 +1.3
454,912 + MIT1002_00420 0.71 +2.8
454,920 - MIT1002_00420 0.72 -0.2
454,955 + MIT1002_00420 0.76 +1.0
454,982 - MIT1002_00420 0.79 +0.8
454,999 - MIT1002_00420 0.80 -0.4
455,028 + MIT1002_00420 0.84 +0.7
455,028 + MIT1002_00420 0.84 +0.2
455,057 - MIT1002_00420 0.87 +1.2

Or see this region's nucleotide sequence