Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00281

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00280 and MIT1002_00281 overlap by 1 nucleotidesMIT1002_00281 and MIT1002_00282 overlap by 1 nucleotides MIT1002_00280: MIT1002_00280 - Hydrogenase isoenzymes formation protein HypD, at 303,821 to 304,954 _00280 MIT1002_00281: MIT1002_00281 - Carbamoyltransferase HypF, at 304,954 to 307,260 _00281 MIT1002_00282: MIT1002_00282 - Hydrogenase isoenzymes formation protein HypE, at 307,260 to 308,312 _00282 Position (kb) 304 305 306 307 308Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 304.027 kb on - strand, within MIT1002_00280at 304.075 kb on - strand, within MIT1002_00280at 304.121 kb on - strand, within MIT1002_00280at 304.197 kb on + strand, within MIT1002_00280at 304.247 kb on - strand, within MIT1002_00280at 304.262 kb on - strand, within MIT1002_00280at 304.272 kb on - strand, within MIT1002_00280at 304.292 kb on + strand, within MIT1002_00280at 304.369 kb on + strand, within MIT1002_00280at 304.369 kb on + strand, within MIT1002_00280at 304.369 kb on + strand, within MIT1002_00280at 304.409 kb on + strand, within MIT1002_00280at 304.531 kb on + strand, within MIT1002_00280at 304.531 kb on + strand, within MIT1002_00280at 304.542 kb on + strand, within MIT1002_00280at 304.542 kb on + strand, within MIT1002_00280at 304.598 kb on + strand, within MIT1002_00280at 304.652 kb on + strand, within MIT1002_00280at 304.853 kb on - strandat 304.853 kb on - strandat 304.867 kb on - strandat 304.895 kb on - strandat 304.932 kb on - strandat 304.956 kb on - strandat 304.992 kb on + strandat 305.021 kb on + strandat 305.039 kb on + strandat 305.041 kb on + strandat 305.041 kb on + strandat 305.054 kb on - strandat 305.145 kb on + strandat 305.232 kb on + strand, within MIT1002_00281at 305.237 kb on + strand, within MIT1002_00281at 305.237 kb on + strand, within MIT1002_00281at 305.240 kb on - strand, within MIT1002_00281at 305.240 kb on - strand, within MIT1002_00281at 305.308 kb on + strand, within MIT1002_00281at 305.325 kb on + strand, within MIT1002_00281at 305.333 kb on - strand, within MIT1002_00281at 305.335 kb on + strand, within MIT1002_00281at 305.356 kb on - strand, within MIT1002_00281at 305.366 kb on + strand, within MIT1002_00281at 305.373 kb on - strand, within MIT1002_00281at 305.417 kb on + strand, within MIT1002_00281at 305.478 kb on - strand, within MIT1002_00281at 305.755 kb on + strand, within MIT1002_00281at 305.755 kb on + strand, within MIT1002_00281at 305.774 kb on + strand, within MIT1002_00281at 305.777 kb on - strand, within MIT1002_00281at 305.815 kb on + strand, within MIT1002_00281at 305.815 kb on + strand, within MIT1002_00281at 305.815 kb on + strand, within MIT1002_00281at 305.823 kb on - strand, within MIT1002_00281at 305.823 kb on - strand, within MIT1002_00281at 305.823 kb on - strand, within MIT1002_00281at 305.823 kb on - strand, within MIT1002_00281at 305.823 kb on - strand, within MIT1002_00281at 305.899 kb on + strand, within MIT1002_00281at 306.022 kb on + strand, within MIT1002_00281at 306.030 kb on + strand, within MIT1002_00281at 306.052 kb on + strand, within MIT1002_00281at 306.052 kb on + strand, within MIT1002_00281at 306.052 kb on + strand, within MIT1002_00281at 306.052 kb on + strand, within MIT1002_00281at 306.052 kb on + strand, within MIT1002_00281at 306.098 kb on - strand, within MIT1002_00281at 306.122 kb on + strand, within MIT1002_00281at 306.130 kb on - strand, within MIT1002_00281at 306.144 kb on + strand, within MIT1002_00281at 306.145 kb on - strand, within MIT1002_00281at 306.145 kb on - strand, within MIT1002_00281at 306.152 kb on - strand, within MIT1002_00281at 306.176 kb on + strand, within MIT1002_00281at 306.176 kb on + strand, within MIT1002_00281at 306.176 kb on + strand, within MIT1002_00281at 306.182 kb on - strand, within MIT1002_00281at 306.182 kb on - strand, within MIT1002_00281at 306.184 kb on - strand, within MIT1002_00281at 306.184 kb on - strand, within MIT1002_00281at 306.201 kb on + strand, within MIT1002_00281at 306.201 kb on + strand, within MIT1002_00281at 306.201 kb on + strand, within MIT1002_00281at 306.201 kb on + strand, within MIT1002_00281at 306.201 kb on + strand, within MIT1002_00281at 306.201 kb on + strand, within MIT1002_00281at 306.201 kb on + strand, within MIT1002_00281at 306.201 kb on + strand, within MIT1002_00281at 306.201 kb on + strand, within MIT1002_00281at 306.201 kb on + strand, within MIT1002_00281at 306.209 kb on - strand, within MIT1002_00281at 306.209 kb on - strand, within MIT1002_00281at 306.209 kb on - strand, within MIT1002_00281at 306.209 kb on - strand, within MIT1002_00281at 306.209 kb on - strand, within MIT1002_00281at 306.209 kb on - strand, within MIT1002_00281at 306.209 kb on - strand, within MIT1002_00281at 306.226 kb on - strand, within MIT1002_00281at 306.273 kb on - strand, within MIT1002_00281at 306.306 kb on + strand, within MIT1002_00281at 306.354 kb on + strand, within MIT1002_00281at 306.409 kb on + strand, within MIT1002_00281at 306.492 kb on + strand, within MIT1002_00281at 306.528 kb on - strand, within MIT1002_00281at 306.570 kb on - strand, within MIT1002_00281at 306.603 kb on - strand, within MIT1002_00281at 306.623 kb on + strand, within MIT1002_00281at 306.678 kb on + strand, within MIT1002_00281at 306.702 kb on - strand, within MIT1002_00281at 306.831 kb on - strand, within MIT1002_00281at 306.833 kb on + strand, within MIT1002_00281at 306.833 kb on + strand, within MIT1002_00281at 306.833 kb on + strand, within MIT1002_00281at 306.833 kb on + strand, within MIT1002_00281at 306.841 kb on - strand, within MIT1002_00281at 306.841 kb on - strand, within MIT1002_00281at 306.841 kb on - strand, within MIT1002_00281at 306.841 kb on - strand, within MIT1002_00281at 306.841 kb on - strand, within MIT1002_00281at 306.862 kb on - strand, within MIT1002_00281at 306.871 kb on + strand, within MIT1002_00281at 306.895 kb on - strand, within MIT1002_00281at 306.903 kb on + strand, within MIT1002_00281at 306.903 kb on + strand, within MIT1002_00281at 306.910 kb on - strand, within MIT1002_00281at 306.911 kb on - strand, within MIT1002_00281at 306.917 kb on - strand, within MIT1002_00281at 307.011 kb on - strand, within MIT1002_00281at 307.061 kb on + strandat 307.061 kb on + strandat 307.140 kb on + strandat 307.150 kb on - strandat 307.162 kb on - strandat 307.175 kb on - strandat 307.220 kb on + strandat 307.220 kb on + strandat 307.220 kb on + strandat 307.244 kb on + strandat 307.267 kb on + strandat 307.326 kb on + strandat 307.339 kb on + strandat 307.347 kb on - strandat 307.357 kb on - strandat 307.396 kb on + strand, within MIT1002_00282at 307.446 kb on - strand, within MIT1002_00282at 307.446 kb on - strand, within MIT1002_00282at 307.478 kb on - strand, within MIT1002_00282at 307.526 kb on - strand, within MIT1002_00282at 307.545 kb on - strand, within MIT1002_00282at 307.568 kb on + strand, within MIT1002_00282at 307.573 kb on + strand, within MIT1002_00282at 307.576 kb on - strand, within MIT1002_00282at 307.586 kb on - strand, within MIT1002_00282at 307.637 kb on + strand, within MIT1002_00282at 307.737 kb on + strand, within MIT1002_00282at 307.786 kb on - strand, within MIT1002_00282at 307.826 kb on - strand, within MIT1002_00282at 307.826 kb on - strand, within MIT1002_00282at 307.826 kb on - strand, within MIT1002_00282at 307.839 kb on - strand, within MIT1002_00282at 307.848 kb on + strand, within MIT1002_00282at 307.861 kb on - strand, within MIT1002_00282at 307.861 kb on - strand, within MIT1002_00282at 307.933 kb on - strand, within MIT1002_00282at 307.951 kb on + strand, within MIT1002_00282at 307.974 kb on + strand, within MIT1002_00282at 307.974 kb on + strand, within MIT1002_00282at 307.982 kb on - strand, within MIT1002_00282at 308.044 kb on + strand, within MIT1002_00282at 308.085 kb on - strand, within MIT1002_00282at 308.136 kb on - strand, within MIT1002_00282at 308.229 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 7
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304,027 - MIT1002_00280 0.18 -0.9
304,075 - MIT1002_00280 0.22 -1.4
304,121 - MIT1002_00280 0.26 -0.3
304,197 + MIT1002_00280 0.33 -2.1
304,247 - MIT1002_00280 0.38 -0.6
304,262 - MIT1002_00280 0.39 +1.0
304,272 - MIT1002_00280 0.40 +1.3
304,292 + MIT1002_00280 0.42 +1.2
304,369 + MIT1002_00280 0.48 +0.7
304,369 + MIT1002_00280 0.48 -2.2
304,369 + MIT1002_00280 0.48 +0.3
304,409 + MIT1002_00280 0.52 -1.5
304,531 + MIT1002_00280 0.63 -1.2
304,531 + MIT1002_00280 0.63 +1.5
304,542 + MIT1002_00280 0.64 -0.5
304,542 + MIT1002_00280 0.64 +0.4
304,598 + MIT1002_00280 0.69 +0.0
304,652 + MIT1002_00280 0.73 -0.8
304,853 - -0.2
304,853 - -1.4
304,867 - +0.4
304,895 - +1.2
304,932 - +0.1
304,956 - +2.7
304,992 + +0.1
305,021 + +0.8
305,039 + -2.3
305,041 + +2.2
305,041 + +0.5
305,054 - -0.0
305,145 + +0.6
305,232 + MIT1002_00281 0.12 -0.1
305,237 + MIT1002_00281 0.12 -2.1
305,237 + MIT1002_00281 0.12 +1.4
305,240 - MIT1002_00281 0.12 -1.0
305,240 - MIT1002_00281 0.12 -0.6
305,308 + MIT1002_00281 0.15 -0.7
305,325 + MIT1002_00281 0.16 +1.1
305,333 - MIT1002_00281 0.16 -0.5
305,335 + MIT1002_00281 0.17 -1.5
305,356 - MIT1002_00281 0.17 +1.3
305,366 + MIT1002_00281 0.18 +1.0
305,373 - MIT1002_00281 0.18 +1.1
305,417 + MIT1002_00281 0.20 +0.4
305,478 - MIT1002_00281 0.23 -1.1
305,755 + MIT1002_00281 0.35 -0.7
305,755 + MIT1002_00281 0.35 -0.7
305,774 + MIT1002_00281 0.36 -0.2
305,777 - MIT1002_00281 0.36 +0.2
305,815 + MIT1002_00281 0.37 -0.2
305,815 + MIT1002_00281 0.37 +1.4
305,815 + MIT1002_00281 0.37 -0.3
305,823 - MIT1002_00281 0.38 +1.7
305,823 - MIT1002_00281 0.38 -1.4
305,823 - MIT1002_00281 0.38 -1.2
305,823 - MIT1002_00281 0.38 +1.1
305,823 - MIT1002_00281 0.38 -0.9
305,899 + MIT1002_00281 0.41 -1.1
306,022 + MIT1002_00281 0.46 -1.1
306,030 + MIT1002_00281 0.47 -0.9
306,052 + MIT1002_00281 0.48 +2.8
306,052 + MIT1002_00281 0.48 +0.6
306,052 + MIT1002_00281 0.48 +1.0
306,052 + MIT1002_00281 0.48 +0.1
306,052 + MIT1002_00281 0.48 +0.8
306,098 - MIT1002_00281 0.50 +0.3
306,122 + MIT1002_00281 0.51 -1.1
306,130 - MIT1002_00281 0.51 -0.2
306,144 + MIT1002_00281 0.52 -0.0
306,145 - MIT1002_00281 0.52 -1.3
306,145 - MIT1002_00281 0.52 +0.7
306,152 - MIT1002_00281 0.52 +2.7
306,176 + MIT1002_00281 0.53 +0.1
306,176 + MIT1002_00281 0.53 +0.3
306,176 + MIT1002_00281 0.53 -0.2
306,182 - MIT1002_00281 0.53 -0.0
306,182 - MIT1002_00281 0.53 -0.2
306,184 - MIT1002_00281 0.53 -0.4
306,184 - MIT1002_00281 0.53 -1.6
306,201 + MIT1002_00281 0.54 -1.7
306,201 + MIT1002_00281 0.54 -0.2
306,201 + MIT1002_00281 0.54 +0.6
306,201 + MIT1002_00281 0.54 -0.1
306,201 + MIT1002_00281 0.54 +1.0
306,201 + MIT1002_00281 0.54 +0.4
306,201 + MIT1002_00281 0.54 -1.8
306,201 + MIT1002_00281 0.54 -0.6
306,201 + MIT1002_00281 0.54 -1.0
306,201 + MIT1002_00281 0.54 -0.1
306,209 - MIT1002_00281 0.54 +0.5
306,209 - MIT1002_00281 0.54 -0.4
306,209 - MIT1002_00281 0.54 +0.4
306,209 - MIT1002_00281 0.54 -0.3
306,209 - MIT1002_00281 0.54 -3.1
306,209 - MIT1002_00281 0.54 +0.5
306,209 - MIT1002_00281 0.54 -1.0
306,226 - MIT1002_00281 0.55 -0.9
306,273 - MIT1002_00281 0.57 +0.0
306,306 + MIT1002_00281 0.59 +1.2
306,354 + MIT1002_00281 0.61 -0.4
306,409 + MIT1002_00281 0.63 -0.7
306,492 + MIT1002_00281 0.67 +0.9
306,528 - MIT1002_00281 0.68 +1.7
306,570 - MIT1002_00281 0.70 +0.3
306,603 - MIT1002_00281 0.71 +0.2
306,623 + MIT1002_00281 0.72 -1.4
306,678 + MIT1002_00281 0.75 -0.5
306,702 - MIT1002_00281 0.76 -0.1
306,831 - MIT1002_00281 0.81 +0.7
306,833 + MIT1002_00281 0.81 -2.4
306,833 + MIT1002_00281 0.81 +1.9
306,833 + MIT1002_00281 0.81 -0.9
306,833 + MIT1002_00281 0.81 -0.3
306,841 - MIT1002_00281 0.82 -0.5
306,841 - MIT1002_00281 0.82 -0.4
306,841 - MIT1002_00281 0.82 +0.2
306,841 - MIT1002_00281 0.82 -1.6
306,841 - MIT1002_00281 0.82 +2.4
306,862 - MIT1002_00281 0.83 -0.4
306,871 + MIT1002_00281 0.83 +0.0
306,895 - MIT1002_00281 0.84 -0.3
306,903 + MIT1002_00281 0.84 -1.5
306,903 + MIT1002_00281 0.84 -0.5
306,910 - MIT1002_00281 0.85 +0.9
306,911 - MIT1002_00281 0.85 +0.5
306,917 - MIT1002_00281 0.85 -0.7
307,011 - MIT1002_00281 0.89 +1.7
307,061 + +0.6
307,061 + -1.5
307,140 + -0.6
307,150 - -0.1
307,162 - +0.9
307,175 - -1.1
307,220 + +0.9
307,220 + -0.4
307,220 + -1.7
307,244 + -0.7
307,267 + -0.6
307,326 + +1.6
307,339 + -0.1
307,347 - +0.6
307,357 - -2.1
307,396 + MIT1002_00282 0.13 -1.3
307,446 - MIT1002_00282 0.18 -0.9
307,446 - MIT1002_00282 0.18 +1.7
307,478 - MIT1002_00282 0.21 +1.0
307,526 - MIT1002_00282 0.25 -0.0
307,545 - MIT1002_00282 0.27 +1.8
307,568 + MIT1002_00282 0.29 +0.5
307,573 + MIT1002_00282 0.30 -0.1
307,576 - MIT1002_00282 0.30 +1.3
307,586 - MIT1002_00282 0.31 -0.4
307,637 + MIT1002_00282 0.36 -2.5
307,737 + MIT1002_00282 0.45 -0.4
307,786 - MIT1002_00282 0.50 +0.1
307,826 - MIT1002_00282 0.54 -1.8
307,826 - MIT1002_00282 0.54 +1.3
307,826 - MIT1002_00282 0.54 -2.4
307,839 - MIT1002_00282 0.55 -1.1
307,848 + MIT1002_00282 0.56 -1.5
307,861 - MIT1002_00282 0.57 -1.6
307,861 - MIT1002_00282 0.57 +0.6
307,933 - MIT1002_00282 0.64 -3.5
307,951 + MIT1002_00282 0.66 +1.5
307,974 + MIT1002_00282 0.68 -0.9
307,974 + MIT1002_00282 0.68 -0.4
307,982 - MIT1002_00282 0.69 -0.3
308,044 + MIT1002_00282 0.74 +0.3
308,085 - MIT1002_00282 0.78 -1.5
308,136 - MIT1002_00282 0.83 -0.2
308,229 - -1.2

Or see this region's nucleotide sequence