Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00194

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00193 and MIT1002_00194 are separated by 78 nucleotidesMIT1002_00194 and MIT1002_00195 are separated by 309 nucleotides MIT1002_00193: MIT1002_00193 - putative dienelactone hydrolase, at 210,993 to 212,279 _00193 MIT1002_00194: MIT1002_00194 - Alpha-galactosidase, at 212,358 to 214,487 _00194 MIT1002_00195: MIT1002_00195 - putative symporter YidK, at 214,797 to 216,251 _00195 Position (kb) 212 213 214 215Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 211.384 kb on - strand, within MIT1002_00193at 211.421 kb on - strand, within MIT1002_00193at 211.433 kb on + strand, within MIT1002_00193at 211.435 kb on + strand, within MIT1002_00193at 211.435 kb on + strand, within MIT1002_00193at 211.548 kb on + strand, within MIT1002_00193at 211.590 kb on - strand, within MIT1002_00193at 211.592 kb on + strand, within MIT1002_00193at 211.657 kb on + strand, within MIT1002_00193at 211.749 kb on + strand, within MIT1002_00193at 211.749 kb on + strand, within MIT1002_00193at 211.757 kb on - strand, within MIT1002_00193at 211.762 kb on - strand, within MIT1002_00193at 211.780 kb on - strand, within MIT1002_00193at 211.795 kb on - strand, within MIT1002_00193at 211.831 kb on - strand, within MIT1002_00193at 211.938 kb on - strand, within MIT1002_00193at 211.938 kb on - strand, within MIT1002_00193at 211.997 kb on + strand, within MIT1002_00193at 211.997 kb on + strand, within MIT1002_00193at 212.002 kb on + strand, within MIT1002_00193at 212.010 kb on - strand, within MIT1002_00193at 212.017 kb on - strand, within MIT1002_00193at 212.072 kb on + strand, within MIT1002_00193at 212.097 kb on - strand, within MIT1002_00193at 212.147 kb on - strand, within MIT1002_00193at 212.180 kb on + strandat 212.230 kb on - strandat 212.250 kb on + strandat 212.265 kb on - strandat 212.303 kb on + strandat 212.303 kb on + strandat 212.303 kb on + strandat 212.311 kb on - strandat 212.311 kb on - strandat 212.316 kb on - strandat 212.355 kb on + strandat 212.363 kb on - strandat 212.374 kb on + strandat 212.374 kb on + strandat 212.379 kb on + strandat 212.382 kb on - strandat 212.481 kb on + strandat 212.570 kb on - strandat 212.579 kb on - strand, within MIT1002_00194at 212.593 kb on - strand, within MIT1002_00194at 212.623 kb on + strand, within MIT1002_00194at 212.767 kb on - strand, within MIT1002_00194at 212.767 kb on - strand, within MIT1002_00194at 212.775 kb on + strand, within MIT1002_00194at 212.776 kb on - strand, within MIT1002_00194at 212.776 kb on - strand, within MIT1002_00194at 212.925 kb on + strand, within MIT1002_00194at 212.950 kb on + strand, within MIT1002_00194at 212.965 kb on + strand, within MIT1002_00194at 212.994 kb on + strand, within MIT1002_00194at 213.002 kb on - strand, within MIT1002_00194at 213.040 kb on + strand, within MIT1002_00194at 213.040 kb on + strand, within MIT1002_00194at 213.040 kb on + strand, within MIT1002_00194at 213.040 kb on + strand, within MIT1002_00194at 213.040 kb on + strand, within MIT1002_00194at 213.048 kb on - strand, within MIT1002_00194at 213.053 kb on + strand, within MIT1002_00194at 213.053 kb on + strand, within MIT1002_00194at 213.061 kb on - strand, within MIT1002_00194at 213.061 kb on - strand, within MIT1002_00194at 213.061 kb on - strand, within MIT1002_00194at 213.102 kb on - strand, within MIT1002_00194at 213.108 kb on - strand, within MIT1002_00194at 213.127 kb on - strand, within MIT1002_00194at 213.140 kb on - strand, within MIT1002_00194at 213.156 kb on + strand, within MIT1002_00194at 213.177 kb on - strand, within MIT1002_00194at 213.201 kb on + strand, within MIT1002_00194at 213.210 kb on + strand, within MIT1002_00194at 213.212 kb on + strand, within MIT1002_00194at 213.212 kb on + strand, within MIT1002_00194at 213.220 kb on - strand, within MIT1002_00194at 213.220 kb on - strand, within MIT1002_00194at 213.265 kb on - strand, within MIT1002_00194at 213.288 kb on + strand, within MIT1002_00194at 213.288 kb on + strand, within MIT1002_00194at 213.288 kb on + strand, within MIT1002_00194at 213.296 kb on - strand, within MIT1002_00194at 213.296 kb on - strand, within MIT1002_00194at 213.296 kb on - strand, within MIT1002_00194at 213.296 kb on - strand, within MIT1002_00194at 213.334 kb on + strand, within MIT1002_00194at 213.390 kb on + strand, within MIT1002_00194at 213.390 kb on + strand, within MIT1002_00194at 213.398 kb on - strand, within MIT1002_00194at 213.398 kb on - strand, within MIT1002_00194at 213.437 kb on + strand, within MIT1002_00194at 213.437 kb on + strand, within MIT1002_00194at 213.437 kb on + strand, within MIT1002_00194at 213.469 kb on - strand, within MIT1002_00194at 213.477 kb on + strand, within MIT1002_00194at 213.535 kb on - strand, within MIT1002_00194at 213.571 kb on + strand, within MIT1002_00194at 213.571 kb on + strand, within MIT1002_00194at 213.579 kb on - strand, within MIT1002_00194at 213.584 kb on - strand, within MIT1002_00194at 213.584 kb on - strand, within MIT1002_00194at 213.586 kb on + strand, within MIT1002_00194at 213.599 kb on + strand, within MIT1002_00194at 213.604 kb on + strand, within MIT1002_00194at 213.604 kb on + strand, within MIT1002_00194at 213.604 kb on + strand, within MIT1002_00194at 213.619 kb on - strand, within MIT1002_00194at 213.620 kb on - strand, within MIT1002_00194at 213.675 kb on + strand, within MIT1002_00194at 213.675 kb on + strand, within MIT1002_00194at 213.675 kb on + strand, within MIT1002_00194at 213.675 kb on + strand, within MIT1002_00194at 213.675 kb on + strand, within MIT1002_00194at 213.675 kb on + strand, within MIT1002_00194at 213.675 kb on + strand, within MIT1002_00194at 213.675 kb on + strand, within MIT1002_00194at 213.675 kb on + strand, within MIT1002_00194at 213.675 kb on + strand, within MIT1002_00194at 213.675 kb on + strand, within MIT1002_00194at 213.675 kb on + strand, within MIT1002_00194at 213.675 kb on + strand, within MIT1002_00194at 213.675 kb on + strand, within MIT1002_00194at 213.683 kb on - strand, within MIT1002_00194at 213.683 kb on - strand, within MIT1002_00194at 213.683 kb on - strand, within MIT1002_00194at 213.683 kb on - strand, within MIT1002_00194at 213.683 kb on - strand, within MIT1002_00194at 213.683 kb on - strand, within MIT1002_00194at 213.683 kb on - strand, within MIT1002_00194at 213.683 kb on - strand, within MIT1002_00194at 213.683 kb on - strand, within MIT1002_00194at 213.683 kb on - strand, within MIT1002_00194at 213.683 kb on - strand, within MIT1002_00194at 213.683 kb on - strand, within MIT1002_00194at 213.693 kb on - strand, within MIT1002_00194at 213.709 kb on - strand, within MIT1002_00194at 213.711 kb on - strand, within MIT1002_00194at 213.729 kb on + strand, within MIT1002_00194at 213.801 kb on - strand, within MIT1002_00194at 213.817 kb on + strand, within MIT1002_00194at 213.825 kb on + strand, within MIT1002_00194at 213.832 kb on - strand, within MIT1002_00194at 213.840 kb on - strand, within MIT1002_00194at 213.844 kb on + strand, within MIT1002_00194at 213.852 kb on - strand, within MIT1002_00194at 213.856 kb on + strand, within MIT1002_00194at 213.864 kb on - strand, within MIT1002_00194at 213.881 kb on + strand, within MIT1002_00194at 213.894 kb on + strand, within MIT1002_00194at 213.902 kb on + strand, within MIT1002_00194at 213.971 kb on + strand, within MIT1002_00194at 213.979 kb on - strand, within MIT1002_00194at 214.020 kb on - strand, within MIT1002_00194at 214.020 kb on - strand, within MIT1002_00194at 214.028 kb on + strand, within MIT1002_00194at 214.036 kb on - strand, within MIT1002_00194at 214.036 kb on - strand, within MIT1002_00194at 214.208 kb on + strand, within MIT1002_00194at 214.208 kb on + strand, within MIT1002_00194at 214.208 kb on + strand, within MIT1002_00194at 214.208 kb on + strand, within MIT1002_00194at 214.208 kb on + strand, within MIT1002_00194at 214.208 kb on + strand, within MIT1002_00194at 214.208 kb on + strand, within MIT1002_00194at 214.208 kb on + strand, within MIT1002_00194at 214.208 kb on + strand, within MIT1002_00194at 214.216 kb on - strand, within MIT1002_00194at 214.216 kb on - strand, within MIT1002_00194at 214.216 kb on - strand, within MIT1002_00194at 214.216 kb on - strand, within MIT1002_00194at 214.216 kb on - strand, within MIT1002_00194at 214.216 kb on - strand, within MIT1002_00194at 214.216 kb on - strand, within MIT1002_00194at 214.216 kb on - strand, within MIT1002_00194at 214.216 kb on - strand, within MIT1002_00194at 214.216 kb on - strand, within MIT1002_00194at 214.216 kb on - strand, within MIT1002_00194at 214.217 kb on - strand, within MIT1002_00194at 214.219 kb on + strand, within MIT1002_00194at 214.237 kb on - strand, within MIT1002_00194at 214.239 kb on + strand, within MIT1002_00194at 214.247 kb on + strand, within MIT1002_00194at 214.247 kb on + strand, within MIT1002_00194at 214.289 kb on + strandat 214.305 kb on - strandat 214.334 kb on + strandat 214.369 kb on + strandat 214.474 kb on - strandat 214.506 kb on + strandat 214.549 kb on + strandat 214.562 kb on - strandat 214.628 kb on + strandat 214.628 kb on + strandat 214.628 kb on + strandat 214.680 kb on - strandat 214.687 kb on - strandat 214.707 kb on + strandat 214.707 kb on + strandat 214.723 kb on - strandat 214.793 kb on - strandat 214.808 kb on - strandat 214.878 kb on + strandat 214.883 kb on + strandat 214.916 kb on + strandat 214.921 kb on + strandat 214.924 kb on - strandat 214.929 kb on - strandat 214.929 kb on - strandat 214.929 kb on - strandat 214.931 kb on + strandat 214.932 kb on + strandat 214.954 kb on - strand, within MIT1002_00195at 214.954 kb on - strand, within MIT1002_00195at 214.959 kb on - strand, within MIT1002_00195at 214.996 kb on + strand, within MIT1002_00195at 214.996 kb on + strand, within MIT1002_00195at 215.051 kb on + strand, within MIT1002_00195at 215.108 kb on - strand, within MIT1002_00195at 215.244 kb on + strand, within MIT1002_00195at 215.250 kb on - strand, within MIT1002_00195at 215.250 kb on - strand, within MIT1002_00195at 215.256 kb on + strand, within MIT1002_00195at 215.263 kb on + strand, within MIT1002_00195at 215.264 kb on - strand, within MIT1002_00195at 215.279 kb on - strand, within MIT1002_00195at 215.365 kb on + strand, within MIT1002_00195at 215.373 kb on - strand, within MIT1002_00195at 215.406 kb on + strand, within MIT1002_00195at 215.442 kb on + strand, within MIT1002_00195at 215.442 kb on + strand, within MIT1002_00195at 215.487 kb on + strand, within MIT1002_00195

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 7
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211,384 - MIT1002_00193 0.30 +0.2
211,421 - MIT1002_00193 0.33 +0.3
211,433 + MIT1002_00193 0.34 -0.2
211,435 + MIT1002_00193 0.34 +0.8
211,435 + MIT1002_00193 0.34 +2.8
211,548 + MIT1002_00193 0.43 +0.8
211,590 - MIT1002_00193 0.46 +0.2
211,592 + MIT1002_00193 0.47 +1.2
211,657 + MIT1002_00193 0.52 -1.6
211,749 + MIT1002_00193 0.59 -0.6
211,749 + MIT1002_00193 0.59 +0.2
211,757 - MIT1002_00193 0.59 +0.1
211,762 - MIT1002_00193 0.60 +2.3
211,780 - MIT1002_00193 0.61 -0.8
211,795 - MIT1002_00193 0.62 +0.2
211,831 - MIT1002_00193 0.65 -0.4
211,938 - MIT1002_00193 0.73 +0.3
211,938 - MIT1002_00193 0.73 -0.5
211,997 + MIT1002_00193 0.78 +1.1
211,997 + MIT1002_00193 0.78 -0.1
212,002 + MIT1002_00193 0.78 +0.7
212,010 - MIT1002_00193 0.79 -2.4
212,017 - MIT1002_00193 0.80 -0.1
212,072 + MIT1002_00193 0.84 +1.5
212,097 - MIT1002_00193 0.86 -0.3
212,147 - MIT1002_00193 0.90 +0.7
212,180 + +0.1
212,230 - +0.7
212,250 + -0.5
212,265 - +0.3
212,303 + +0.0
212,303 + -2.6
212,303 + -0.3
212,311 - -0.1
212,311 - +2.6
212,316 - -0.1
212,355 + -4.0
212,363 - +1.7
212,374 + -0.6
212,374 + +3.0
212,379 + -4.2
212,382 - -0.3
212,481 + -1.2
212,570 - -0.4
212,579 - MIT1002_00194 0.10 +0.5
212,593 - MIT1002_00194 0.11 -1.5
212,623 + MIT1002_00194 0.12 -0.4
212,767 - MIT1002_00194 0.19 +1.8
212,767 - MIT1002_00194 0.19 -0.8
212,775 + MIT1002_00194 0.20 -0.4
212,776 - MIT1002_00194 0.20 -0.5
212,776 - MIT1002_00194 0.20 -0.6
212,925 + MIT1002_00194 0.27 -1.1
212,950 + MIT1002_00194 0.28 -0.2
212,965 + MIT1002_00194 0.28 -1.3
212,994 + MIT1002_00194 0.30 +0.4
213,002 - MIT1002_00194 0.30 -1.2
213,040 + MIT1002_00194 0.32 +0.0
213,040 + MIT1002_00194 0.32 -0.7
213,040 + MIT1002_00194 0.32 +2.2
213,040 + MIT1002_00194 0.32 -0.4
213,040 + MIT1002_00194 0.32 -0.7
213,048 - MIT1002_00194 0.32 -1.1
213,053 + MIT1002_00194 0.33 -1.9
213,053 + MIT1002_00194 0.33 -0.3
213,061 - MIT1002_00194 0.33 -0.5
213,061 - MIT1002_00194 0.33 +0.6
213,061 - MIT1002_00194 0.33 -1.1
213,102 - MIT1002_00194 0.35 -0.4
213,108 - MIT1002_00194 0.35 -0.1
213,127 - MIT1002_00194 0.36 -1.6
213,140 - MIT1002_00194 0.37 +0.4
213,156 + MIT1002_00194 0.37 -0.7
213,177 - MIT1002_00194 0.38 +0.4
213,201 + MIT1002_00194 0.40 -0.9
213,210 + MIT1002_00194 0.40 +0.6
213,212 + MIT1002_00194 0.40 +1.7
213,212 + MIT1002_00194 0.40 -0.4
213,220 - MIT1002_00194 0.40 +1.8
213,220 - MIT1002_00194 0.40 -1.4
213,265 - MIT1002_00194 0.43 -1.3
213,288 + MIT1002_00194 0.44 -1.8
213,288 + MIT1002_00194 0.44 +0.1
213,288 + MIT1002_00194 0.44 +0.4
213,296 - MIT1002_00194 0.44 +1.6
213,296 - MIT1002_00194 0.44 -0.3
213,296 - MIT1002_00194 0.44 -0.4
213,296 - MIT1002_00194 0.44 +0.2
213,334 + MIT1002_00194 0.46 +0.4
213,390 + MIT1002_00194 0.48 -1.0
213,390 + MIT1002_00194 0.48 -0.9
213,398 - MIT1002_00194 0.49 +0.8
213,398 - MIT1002_00194 0.49 -0.1
213,437 + MIT1002_00194 0.51 -0.5
213,437 + MIT1002_00194 0.51 +0.6
213,437 + MIT1002_00194 0.51 +0.3
213,469 - MIT1002_00194 0.52 +2.0
213,477 + MIT1002_00194 0.53 +0.7
213,535 - MIT1002_00194 0.55 +0.7
213,571 + MIT1002_00194 0.57 -1.7
213,571 + MIT1002_00194 0.57 -0.8
213,579 - MIT1002_00194 0.57 -1.2
213,584 - MIT1002_00194 0.58 -0.7
213,584 - MIT1002_00194 0.58 -1.1
213,586 + MIT1002_00194 0.58 -2.2
213,599 + MIT1002_00194 0.58 +0.1
213,604 + MIT1002_00194 0.58 +1.2
213,604 + MIT1002_00194 0.58 -0.9
213,604 + MIT1002_00194 0.58 +1.4
213,619 - MIT1002_00194 0.59 +0.1
213,620 - MIT1002_00194 0.59 +0.2
213,675 + MIT1002_00194 0.62 +0.3
213,675 + MIT1002_00194 0.62 -1.0
213,675 + MIT1002_00194 0.62 -0.7
213,675 + MIT1002_00194 0.62 -0.7
213,675 + MIT1002_00194 0.62 -0.4
213,675 + MIT1002_00194 0.62 +1.2
213,675 + MIT1002_00194 0.62 +1.2
213,675 + MIT1002_00194 0.62 -2.3
213,675 + MIT1002_00194 0.62 -4.3
213,675 + MIT1002_00194 0.62 -0.7
213,675 + MIT1002_00194 0.62 -0.2
213,675 + MIT1002_00194 0.62 -0.2
213,675 + MIT1002_00194 0.62 -0.6
213,675 + MIT1002_00194 0.62 +1.2
213,683 - MIT1002_00194 0.62 +0.4
213,683 - MIT1002_00194 0.62 +1.6
213,683 - MIT1002_00194 0.62 -0.2
213,683 - MIT1002_00194 0.62 -0.7
213,683 - MIT1002_00194 0.62 -0.4
213,683 - MIT1002_00194 0.62 +0.8
213,683 - MIT1002_00194 0.62 -1.5
213,683 - MIT1002_00194 0.62 +1.3
213,683 - MIT1002_00194 0.62 -1.2
213,683 - MIT1002_00194 0.62 -0.6
213,683 - MIT1002_00194 0.62 -2.2
213,683 - MIT1002_00194 0.62 -0.1
213,693 - MIT1002_00194 0.63 -2.5
213,709 - MIT1002_00194 0.63 -0.6
213,711 - MIT1002_00194 0.64 -0.9
213,729 + MIT1002_00194 0.64 -0.1
213,801 - MIT1002_00194 0.68 -1.6
213,817 + MIT1002_00194 0.68 -1.6
213,825 + MIT1002_00194 0.69 -2.2
213,832 - MIT1002_00194 0.69 -0.3
213,840 - MIT1002_00194 0.70 +0.3
213,844 + MIT1002_00194 0.70 -0.1
213,852 - MIT1002_00194 0.70 -0.4
213,856 + MIT1002_00194 0.70 -0.8
213,864 - MIT1002_00194 0.71 -1.3
213,881 + MIT1002_00194 0.72 +0.2
213,894 + MIT1002_00194 0.72 +0.3
213,902 + MIT1002_00194 0.72 +0.5
213,971 + MIT1002_00194 0.76 -1.2
213,979 - MIT1002_00194 0.76 -0.1
214,020 - MIT1002_00194 0.78 +1.5
214,020 - MIT1002_00194 0.78 -1.2
214,028 + MIT1002_00194 0.78 -0.2
214,036 - MIT1002_00194 0.79 +1.9
214,036 - MIT1002_00194 0.79 -0.2
214,208 + MIT1002_00194 0.87 +0.1
214,208 + MIT1002_00194 0.87 -1.8
214,208 + MIT1002_00194 0.87 -0.9
214,208 + MIT1002_00194 0.87 -1.9
214,208 + MIT1002_00194 0.87 +1.3
214,208 + MIT1002_00194 0.87 +1.7
214,208 + MIT1002_00194 0.87 -0.4
214,208 + MIT1002_00194 0.87 +0.7
214,208 + MIT1002_00194 0.87 -0.8
214,216 - MIT1002_00194 0.87 -0.7
214,216 - MIT1002_00194 0.87 +1.3
214,216 - MIT1002_00194 0.87 -0.6
214,216 - MIT1002_00194 0.87 -0.4
214,216 - MIT1002_00194 0.87 +0.4
214,216 - MIT1002_00194 0.87 -0.8
214,216 - MIT1002_00194 0.87 -0.2
214,216 - MIT1002_00194 0.87 +0.4
214,216 - MIT1002_00194 0.87 -0.8
214,216 - MIT1002_00194 0.87 -1.2
214,216 - MIT1002_00194 0.87 -0.4
214,217 - MIT1002_00194 0.87 -2.0
214,219 + MIT1002_00194 0.87 +0.4
214,237 - MIT1002_00194 0.88 -0.4
214,239 + MIT1002_00194 0.88 -0.8
214,247 + MIT1002_00194 0.89 -1.8
214,247 + MIT1002_00194 0.89 -0.1
214,289 + -0.2
214,305 - +3.1
214,334 + +0.2
214,369 + -0.8
214,474 - -2.2
214,506 + -1.4
214,549 + +0.8
214,562 - +0.6
214,628 + +1.4
214,628 + +1.4
214,628 + -0.4
214,680 - -2.7
214,687 - -1.0
214,707 + +0.4
214,707 + +0.6
214,723 - +0.2
214,793 - +1.8
214,808 - -2.8
214,878 + -0.4
214,883 + -0.4
214,916 + -0.1
214,921 + -3.1
214,924 - -1.6
214,929 - +0.8
214,929 - -1.5
214,929 - -0.4
214,931 + -1.1
214,932 + -1.0
214,954 - MIT1002_00195 0.11 -0.7
214,954 - MIT1002_00195 0.11 -1.5
214,959 - MIT1002_00195 0.11 -1.9
214,996 + MIT1002_00195 0.14 -0.2
214,996 + MIT1002_00195 0.14 -0.2
215,051 + MIT1002_00195 0.17 -0.2
215,108 - MIT1002_00195 0.21 -2.9
215,244 + MIT1002_00195 0.31 -1.1
215,250 - MIT1002_00195 0.31 -0.8
215,250 - MIT1002_00195 0.31 -1.0
215,256 + MIT1002_00195 0.32 +1.3
215,263 + MIT1002_00195 0.32 +1.0
215,264 - MIT1002_00195 0.32 -1.3
215,279 - MIT1002_00195 0.33 -0.2
215,365 + MIT1002_00195 0.39 -0.9
215,373 - MIT1002_00195 0.40 -1.0
215,406 + MIT1002_00195 0.42 -0.0
215,442 + MIT1002_00195 0.44 -1.1
215,442 + MIT1002_00195 0.44 +0.3
215,487 + MIT1002_00195 0.47 +0.8

Or see this region's nucleotide sequence