Experiment: biofilm; Day1; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18980 and LRK53_RS18985 are separated by 151 nucleotides LRK53_RS18985 and LRK53_RS18990 are separated by 82 nucleotides LRK53_RS18990 and LRK53_RS18995 are separated by 85 nucleotides LRK53_RS18995 and LRK53_RS19000 are separated by 117 nucleotides LRK53_RS19000 and LRK53_RS19005 are separated by 85 nucleotides
LRK53_RS18980: LRK53_RS18980 - hypothetical protein, at 188,716 to 189,102
_RS18980
LRK53_RS18985: LRK53_RS18985 - hypothetical protein, at 189,254 to 189,619
_RS18985
LRK53_RS18990: LRK53_RS18990 - hypothetical protein, at 189,702 to 190,061
_RS18990
LRK53_RS18995: LRK53_RS18995 - hypothetical protein, at 190,147 to 190,500
_RS18995
LRK53_RS19000: LRK53_RS19000 - hypothetical protein, at 190,618 to 190,953
_RS19000
LRK53_RS19005: LRK53_RS19005 - phosphoadenosine phosphosulfate reductase family protein, at 191,039 to 192,148
_RS19005
Position (kb) 189
190
191 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 188.798 kb on - strand, within LRK53_RS18980 at 188.798 kb on - strand, within LRK53_RS18980 at 188.894 kb on - strand, within LRK53_RS18980 at 188.905 kb on + strand, within LRK53_RS18980 at 189.029 kb on + strand, within LRK53_RS18980 at 189.148 kb on - strand at 189.396 kb on + strand, within LRK53_RS18985 at 189.396 kb on + strand, within LRK53_RS18985 at 189.396 kb on + strand, within LRK53_RS18985 at 189.397 kb on - strand, within LRK53_RS18985 at 189.397 kb on - strand, within LRK53_RS18985 at 189.397 kb on - strand, within LRK53_RS18985 at 189.397 kb on - strand, within LRK53_RS18985 at 189.397 kb on - strand, within LRK53_RS18985 at 189.397 kb on - strand, within LRK53_RS18985 at 189.518 kb on + strand, within LRK53_RS18985 at 189.518 kb on + strand, within LRK53_RS18985 at 189.519 kb on - strand, within LRK53_RS18985 at 189.519 kb on - strand, within LRK53_RS18985 at 189.519 kb on - strand, within LRK53_RS18985 at 189.519 kb on - strand, within LRK53_RS18985 at 189.521 kb on + strand, within LRK53_RS18985 at 189.521 kb on + strand, within LRK53_RS18985 at 189.521 kb on + strand, within LRK53_RS18985 at 189.521 kb on + strand, within LRK53_RS18985 at 189.521 kb on + strand, within LRK53_RS18985 at 189.521 kb on + strand, within LRK53_RS18985 at 189.521 kb on + strand, within LRK53_RS18985 at 189.521 kb on + strand, within LRK53_RS18985 at 189.521 kb on + strand, within LRK53_RS18985 at 189.521 kb on + strand, within LRK53_RS18985 at 189.522 kb on - strand, within LRK53_RS18985 at 189.522 kb on - strand, within LRK53_RS18985 at 189.522 kb on - strand, within LRK53_RS18985 at 189.522 kb on - strand, within LRK53_RS18985 at 189.522 kb on - strand, within LRK53_RS18985 at 189.522 kb on - strand, within LRK53_RS18985 at 189.522 kb on - strand, within LRK53_RS18985 at 189.522 kb on - strand, within LRK53_RS18985 at 189.522 kb on - strand, within LRK53_RS18985 at 189.522 kb on - strand, within LRK53_RS18985 at 189.522 kb on - strand, within LRK53_RS18985 at 189.522 kb on - strand, within LRK53_RS18985 at 189.522 kb on - strand, within LRK53_RS18985 at 189.753 kb on + strand, within LRK53_RS18990 at 189.753 kb on + strand, within LRK53_RS18990 at 189.753 kb on + strand, within LRK53_RS18990 at 189.753 kb on + strand, within LRK53_RS18990 at 189.754 kb on - strand, within LRK53_RS18990 at 189.754 kb on - strand, within LRK53_RS18990 at 189.756 kb on + strand, within LRK53_RS18990 at 189.756 kb on + strand, within LRK53_RS18990 at 189.756 kb on + strand, within LRK53_RS18990 at 189.756 kb on + strand, within LRK53_RS18990 at 189.757 kb on - strand, within LRK53_RS18990 at 189.757 kb on - strand, within LRK53_RS18990 at 189.757 kb on - strand, within LRK53_RS18990 at 189.757 kb on - strand, within LRK53_RS18990 at 189.921 kb on + strand, within LRK53_RS18990 at 189.921 kb on + strand, within LRK53_RS18990 at 189.921 kb on + strand, within LRK53_RS18990 at 189.921 kb on + strand, within LRK53_RS18990 at 189.921 kb on + strand, within LRK53_RS18990 at 189.921 kb on + strand, within LRK53_RS18990 at 189.921 kb on + strand, within LRK53_RS18990 at 189.921 kb on + strand, within LRK53_RS18990 at 189.922 kb on - strand, within LRK53_RS18990 at 189.922 kb on - strand, within LRK53_RS18990 at 189.922 kb on - strand, within LRK53_RS18990 at 189.922 kb on - strand, within LRK53_RS18990 at 189.922 kb on - strand, within LRK53_RS18990 at 189.966 kb on + strand, within LRK53_RS18990 at 189.966 kb on + strand, within LRK53_RS18990 at 189.967 kb on - strand, within LRK53_RS18990 at 189.967 kb on - strand, within LRK53_RS18990 at 189.982 kb on - strand, within LRK53_RS18990 at 189.982 kb on - strand, within LRK53_RS18990 at 189.982 kb on - strand, within LRK53_RS18990 at 189.982 kb on - strand, within LRK53_RS18990 at 189.982 kb on - strand, within LRK53_RS18990 at 190.059 kb on + strand at 190.059 kb on + strand at 190.059 kb on + strand at 190.059 kb on + strand at 190.060 kb on - strand at 190.060 kb on - strand at 190.060 kb on - strand at 190.110 kb on + strand at 190.111 kb on - strand at 190.114 kb on + strand at 190.114 kb on + strand at 190.114 kb on + strand at 190.114 kb on + strand at 190.114 kb on + strand at 190.114 kb on + strand at 190.114 kb on + strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.115 kb on - strand at 190.210 kb on + strand, within LRK53_RS18995 at 190.210 kb on + strand, within LRK53_RS18995 at 190.295 kb on + strand, within LRK53_RS18995 at 190.295 kb on + strand, within LRK53_RS18995 at 190.412 kb on - strand, within LRK53_RS18995 at 190.517 kb on + strand at 190.517 kb on + strand at 190.517 kb on + strand at 190.664 kb on + strand, within LRK53_RS19000 at 190.665 kb on - strand, within LRK53_RS19000 at 190.882 kb on + strand, within LRK53_RS19000 at 190.882 kb on + strand, within LRK53_RS19000 at 190.882 kb on + strand, within LRK53_RS19000 at 190.882 kb on + strand, within LRK53_RS19000 at 190.882 kb on + strand, within LRK53_RS19000 at 190.882 kb on + strand, within LRK53_RS19000 at 190.882 kb on + strand, within LRK53_RS19000 at 190.882 kb on + strand, within LRK53_RS19000 at 190.883 kb on - strand, within LRK53_RS19000 at 190.883 kb on - strand, within LRK53_RS19000 at 190.883 kb on - strand, within LRK53_RS19000 at 190.883 kb on - strand, within LRK53_RS19000 at 190.883 kb on - strand, within LRK53_RS19000 at 190.883 kb on - strand, within LRK53_RS19000 at 190.883 kb on - strand, within LRK53_RS19000 at 190.884 kb on + strand, within LRK53_RS19000 at 190.885 kb on - strand, within LRK53_RS19000 at 190.885 kb on - strand, within LRK53_RS19000 at 190.885 kb on - strand, within LRK53_RS19000 at 190.885 kb on - strand, within LRK53_RS19000 at 190.885 kb on - strand, within LRK53_RS19000 at 190.951 kb on + strand at 190.952 kb on - strand at 190.952 kb on - strand at 190.952 kb on - strand at 191.001 kb on - strand at 191.038 kb on + strand at 191.038 kb on + strand at 191.038 kb on + strand at 191.038 kb on + strand at 191.038 kb on + strand at 191.038 kb on + strand at 191.038 kb on + strand at 191.038 kb on + strand at 191.039 kb on - strand at 191.039 kb on - strand at 191.039 kb on - strand at 191.039 kb on - strand at 191.039 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; remove 188,798 - LRK53_RS18980 0.21 -1.2 188,798 - LRK53_RS18980 0.21 +0.8 188,894 - LRK53_RS18980 0.46 +0.2 188,905 + LRK53_RS18980 0.49 +2.0 189,029 + LRK53_RS18980 0.81 -2.1 189,148 - -1.0 189,396 + LRK53_RS18985 0.39 -2.4 189,396 + LRK53_RS18985 0.39 -0.5 189,396 + LRK53_RS18985 0.39 -2.3 189,397 - LRK53_RS18985 0.39 -0.2 189,397 - LRK53_RS18985 0.39 -0.2 189,397 - LRK53_RS18985 0.39 +1.4 189,397 - LRK53_RS18985 0.39 +0.2 189,397 - LRK53_RS18985 0.39 +0.8 189,397 - LRK53_RS18985 0.39 -0.7 189,518 + LRK53_RS18985 0.72 -1.9 189,518 + LRK53_RS18985 0.72 -2.2 189,519 - LRK53_RS18985 0.72 +0.6 189,519 - LRK53_RS18985 0.72 +1.8 189,519 - LRK53_RS18985 0.72 -1.2 189,519 - LRK53_RS18985 0.72 -0.2 189,521 + LRK53_RS18985 0.73 -1.5 189,521 + LRK53_RS18985 0.73 -0.9 189,521 + LRK53_RS18985 0.73 +0.2 189,521 + LRK53_RS18985 0.73 -1.7 189,521 + LRK53_RS18985 0.73 +0.4 189,521 + LRK53_RS18985 0.73 +0.2 189,521 + LRK53_RS18985 0.73 -0.6 189,521 + LRK53_RS18985 0.73 -1.6 189,521 + LRK53_RS18985 0.73 -0.7 189,521 + LRK53_RS18985 0.73 -0.5 189,522 - LRK53_RS18985 0.73 -1.4 189,522 - LRK53_RS18985 0.73 +0.5 189,522 - LRK53_RS18985 0.73 -1.7 189,522 - LRK53_RS18985 0.73 -0.2 189,522 - LRK53_RS18985 0.73 +0.8 189,522 - LRK53_RS18985 0.73 -0.7 189,522 - LRK53_RS18985 0.73 +0.9 189,522 - LRK53_RS18985 0.73 -0.2 189,522 - LRK53_RS18985 0.73 -1.0 189,522 - LRK53_RS18985 0.73 -0.1 189,522 - LRK53_RS18985 0.73 -0.8 189,522 - LRK53_RS18985 0.73 +1.2 189,522 - LRK53_RS18985 0.73 -2.2 189,753 + LRK53_RS18990 0.14 -0.7 189,753 + LRK53_RS18990 0.14 +1.3 189,753 + LRK53_RS18990 0.14 -1.3 189,753 + LRK53_RS18990 0.14 -1.0 189,754 - LRK53_RS18990 0.14 -0.6 189,754 - LRK53_RS18990 0.14 -0.0 189,756 + LRK53_RS18990 0.15 -1.5 189,756 + LRK53_RS18990 0.15 -0.8 189,756 + LRK53_RS18990 0.15 -1.9 189,756 + LRK53_RS18990 0.15 -0.6 189,757 - LRK53_RS18990 0.15 +0.9 189,757 - LRK53_RS18990 0.15 -1.8 189,757 - LRK53_RS18990 0.15 +0.4 189,757 - LRK53_RS18990 0.15 -1.6 189,921 + LRK53_RS18990 0.61 -0.2 189,921 + LRK53_RS18990 0.61 -1.1 189,921 + LRK53_RS18990 0.61 -1.7 189,921 + LRK53_RS18990 0.61 +0.2 189,921 + LRK53_RS18990 0.61 -1.6 189,921 + LRK53_RS18990 0.61 -0.7 189,921 + LRK53_RS18990 0.61 +1.8 189,921 + LRK53_RS18990 0.61 -1.4 189,922 - LRK53_RS18990 0.61 -0.7 189,922 - LRK53_RS18990 0.61 -1.8 189,922 - LRK53_RS18990 0.61 -0.6 189,922 - LRK53_RS18990 0.61 -1.6 189,922 - LRK53_RS18990 0.61 -0.8 189,966 + LRK53_RS18990 0.73 -0.8 189,966 + LRK53_RS18990 0.73 -1.9 189,967 - LRK53_RS18990 0.74 -0.8 189,967 - LRK53_RS18990 0.74 -1.9 189,982 - LRK53_RS18990 0.78 -0.3 189,982 - LRK53_RS18990 0.78 +1.5 189,982 - LRK53_RS18990 0.78 -2.5 189,982 - LRK53_RS18990 0.78 -0.7 189,982 - LRK53_RS18990 0.78 -3.4 190,059 + -2.6 190,059 + +0.1 190,059 + +0.9 190,059 + -2.6 190,060 - -0.3 190,060 - -2.0 190,060 - -1.8 190,110 + -0.8 190,111 - +0.3 190,114 + -0.6 190,114 + -0.8 190,114 + +0.6 190,114 + +1.0 190,114 + -0.7 190,114 + +0.2 190,114 + -0.1 190,115 - -0.9 190,115 - +0.4 190,115 - -0.1 190,115 - +1.8 190,115 - -0.6 190,115 - -2.5 190,115 - -3.2 190,115 - -1.2 190,115 - +0.2 190,115 - +0.8 190,115 - -0.2 190,115 - -1.6 190,115 - -0.8 190,115 - -0.4 190,115 - -1.4 190,115 - -1.2 190,115 - -1.7 190,115 - -2.8 190,115 - -1.2 190,115 - -1.7 190,210 + LRK53_RS18995 0.18 -0.6 190,210 + LRK53_RS18995 0.18 -1.2 190,295 + LRK53_RS18995 0.42 -1.4 190,295 + LRK53_RS18995 0.42 -1.4 190,412 - LRK53_RS18995 0.75 +2.4 190,517 + -0.6 190,517 + -0.8 190,517 + -2.2 190,664 + LRK53_RS19000 0.14 -1.6 190,665 - LRK53_RS19000 0.14 +0.3 190,882 + LRK53_RS19000 0.79 -0.6 190,882 + LRK53_RS19000 0.79 -1.1 190,882 + LRK53_RS19000 0.79 +0.4 190,882 + LRK53_RS19000 0.79 +0.1 190,882 + LRK53_RS19000 0.79 +0.9 190,882 + LRK53_RS19000 0.79 -1.1 190,882 + LRK53_RS19000 0.79 -1.4 190,882 + LRK53_RS19000 0.79 +0.2 190,883 - LRK53_RS19000 0.79 -2.0 190,883 - LRK53_RS19000 0.79 -0.6 190,883 - LRK53_RS19000 0.79 -0.6 190,883 - LRK53_RS19000 0.79 +0.5 190,883 - LRK53_RS19000 0.79 -0.8 190,883 - LRK53_RS19000 0.79 -2.8 190,883 - LRK53_RS19000 0.79 -1.6 190,884 + LRK53_RS19000 0.79 +0.2 190,885 - LRK53_RS19000 0.79 -0.6 190,885 - LRK53_RS19000 0.79 +1.0 190,885 - LRK53_RS19000 0.79 -2.0 190,885 - LRK53_RS19000 0.79 -2.1 190,885 - LRK53_RS19000 0.79 -1.9 190,951 + -1.0 190,952 - -1.7 190,952 - -1.8 190,952 - +1.4 191,001 - -1.0 191,038 + -1.4 191,038 + -1.7 191,038 + -1.7 191,038 + -1.7 191,038 + -0.8 191,038 + -0.8 191,038 + -1.2 191,038 + +0.8 191,039 - -1.3 191,039 - +0.8 191,039 - -2.5 191,039 - -1.8 191,039 - +0.1
Or see this region's nucleotide sequence