Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18960

Experiment: biofilm; Day1; NLDM;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS18955 and LRK53_RS18960 are separated by 103 nucleotidesLRK53_RS18960 and LRK53_RS18965 are separated by 78 nucleotidesLRK53_RS18965 and LRK53_RS18970 overlap by 4 nucleotides LRK53_RS18955: LRK53_RS18955 - hypothetical protein, at 185,110 to 185,745 _RS18955 LRK53_RS18960: LRK53_RS18960 - hypothetical protein, at 185,849 to 186,130 _RS18960 LRK53_RS18965: LRK53_RS18965 - hypothetical protein, at 186,209 to 186,907 _RS18965 LRK53_RS18970: LRK53_RS18970 - site-specific DNA-methyltransferase, at 186,904 to 188,163 _RS18970 Position (kb) 185 186 187Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 184.946 kb on + strandat 184.947 kb on - strandat 184.947 kb on - strandat 185.026 kb on + strandat 185.026 kb on + strandat 185.026 kb on + strandat 185.027 kb on - strandat 185.027 kb on - strandat 185.056 kb on - strandat 185.096 kb on + strandat 185.096 kb on + strandat 185.096 kb on + strandat 185.096 kb on + strandat 185.097 kb on - strandat 185.097 kb on - strandat 185.097 kb on - strandat 185.097 kb on - strandat 185.097 kb on - strandat 185.097 kb on - strandat 185.097 kb on - strandat 185.097 kb on - strandat 185.100 kb on + strandat 185.101 kb on - strandat 185.138 kb on - strandat 185.184 kb on + strand, within LRK53_RS18955at 185.184 kb on + strand, within LRK53_RS18955at 185.184 kb on + strand, within LRK53_RS18955at 185.184 kb on + strand, within LRK53_RS18955at 185.184 kb on + strand, within LRK53_RS18955at 185.184 kb on + strand, within LRK53_RS18955at 185.184 kb on + strand, within LRK53_RS18955at 185.185 kb on - strand, within LRK53_RS18955at 185.185 kb on - strand, within LRK53_RS18955at 185.185 kb on - strand, within LRK53_RS18955at 185.185 kb on - strand, within LRK53_RS18955at 185.185 kb on - strand, within LRK53_RS18955at 185.185 kb on - strand, within LRK53_RS18955at 185.185 kb on - strand, within LRK53_RS18955at 185.185 kb on - strand, within LRK53_RS18955at 185.285 kb on + strand, within LRK53_RS18955at 185.285 kb on + strand, within LRK53_RS18955at 185.285 kb on + strand, within LRK53_RS18955at 185.285 kb on + strand, within LRK53_RS18955at 185.285 kb on + strand, within LRK53_RS18955at 185.285 kb on + strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.340 kb on + strand, within LRK53_RS18955at 185.341 kb on - strand, within LRK53_RS18955at 185.353 kb on + strand, within LRK53_RS18955at 185.404 kb on + strand, within LRK53_RS18955at 185.404 kb on + strand, within LRK53_RS18955at 185.404 kb on + strand, within LRK53_RS18955at 185.404 kb on + strand, within LRK53_RS18955at 185.404 kb on + strand, within LRK53_RS18955at 185.405 kb on - strand, within LRK53_RS18955at 185.405 kb on - strand, within LRK53_RS18955at 185.405 kb on - strand, within LRK53_RS18955at 185.405 kb on - strand, within LRK53_RS18955at 185.405 kb on - strand, within LRK53_RS18955at 185.405 kb on - strand, within LRK53_RS18955at 185.580 kb on - strand, within LRK53_RS18955at 185.743 kb on + strandat 185.743 kb on + strandat 185.744 kb on - strandat 185.744 kb on - strandat 185.811 kb on + strandat 185.812 kb on - strandat 185.921 kb on + strand, within LRK53_RS18960at 186.065 kb on + strand, within LRK53_RS18960at 186.128 kb on + strandat 186.128 kb on + strandat 186.129 kb on - strandat 186.129 kb on - strandat 186.193 kb on + strandat 186.284 kb on + strand, within LRK53_RS18965at 186.284 kb on + strand, within LRK53_RS18965at 186.285 kb on - strand, within LRK53_RS18965at 186.285 kb on - strand, within LRK53_RS18965at 186.285 kb on - strand, within LRK53_RS18965at 186.285 kb on - strand, within LRK53_RS18965at 186.285 kb on - strand, within LRK53_RS18965at 186.363 kb on + strand, within LRK53_RS18965at 186.363 kb on + strand, within LRK53_RS18965at 186.363 kb on + strand, within LRK53_RS18965at 186.363 kb on + strand, within LRK53_RS18965at 186.363 kb on + strand, within LRK53_RS18965at 186.364 kb on - strand, within LRK53_RS18965at 186.364 kb on - strand, within LRK53_RS18965at 186.364 kb on - strand, within LRK53_RS18965at 186.364 kb on - strand, within LRK53_RS18965at 186.364 kb on - strand, within LRK53_RS18965at 186.364 kb on - strand, within LRK53_RS18965at 186.364 kb on - strand, within LRK53_RS18965at 186.364 kb on - strand, within LRK53_RS18965at 186.364 kb on - strand, within LRK53_RS18965at 186.494 kb on + strand, within LRK53_RS18965at 186.494 kb on + strand, within LRK53_RS18965at 186.495 kb on - strand, within LRK53_RS18965at 186.495 kb on - strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.605 kb on + strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.606 kb on - strand, within LRK53_RS18965at 186.725 kb on + strand, within LRK53_RS18965at 186.725 kb on + strand, within LRK53_RS18965at 186.725 kb on + strand, within LRK53_RS18965at 186.725 kb on + strand, within LRK53_RS18965at 186.725 kb on + strand, within LRK53_RS18965at 186.725 kb on + strand, within LRK53_RS18965at 186.726 kb on - strand, within LRK53_RS18965at 186.726 kb on - strand, within LRK53_RS18965at 186.726 kb on - strand, within LRK53_RS18965at 186.781 kb on - strand, within LRK53_RS18965at 186.781 kb on - strand, within LRK53_RS18965at 186.926 kb on + strandat 186.961 kb on + strandat 186.961 kb on + strandat 186.962 kb on - strandat 186.962 kb on - strandat 187.041 kb on + strand, within LRK53_RS18970at 187.041 kb on + strand, within LRK53_RS18970at 187.041 kb on + strand, within LRK53_RS18970at 187.042 kb on - strand, within LRK53_RS18970at 187.117 kb on - strand, within LRK53_RS18970

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM;
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184,946 + -1.8
184,947 - -2.1
184,947 - -1.5
185,026 + -0.6
185,026 + -0.5
185,026 + +0.4
185,027 - -0.4
185,027 - -0.8
185,056 - -0.6
185,096 + -0.2
185,096 + -0.8
185,096 + -1.3
185,096 + -0.0
185,097 - -0.5
185,097 - -0.5
185,097 - -0.6
185,097 - -0.7
185,097 - -2.2
185,097 - -0.2
185,097 - -1.8
185,097 - -0.1
185,100 + -1.7
185,101 - +0.8
185,138 - -0.4
185,184 + LRK53_RS18955 0.12 -1.9
185,184 + LRK53_RS18955 0.12 +0.8
185,184 + LRK53_RS18955 0.12 -1.0
185,184 + LRK53_RS18955 0.12 -0.4
185,184 + LRK53_RS18955 0.12 -0.6
185,184 + LRK53_RS18955 0.12 +0.8
185,184 + LRK53_RS18955 0.12 -0.3
185,185 - LRK53_RS18955 0.12 -1.4
185,185 - LRK53_RS18955 0.12 +0.1
185,185 - LRK53_RS18955 0.12 -1.2
185,185 - LRK53_RS18955 0.12 -2.2
185,185 - LRK53_RS18955 0.12 +1.8
185,185 - LRK53_RS18955 0.12 -0.9
185,185 - LRK53_RS18955 0.12 +0.8
185,185 - LRK53_RS18955 0.12 -1.6
185,285 + LRK53_RS18955 0.28 +2.6
185,285 + LRK53_RS18955 0.28 -1.4
185,285 + LRK53_RS18955 0.28 -2.0
185,285 + LRK53_RS18955 0.28 -0.6
185,285 + LRK53_RS18955 0.28 -0.1
185,285 + LRK53_RS18955 0.28 -0.3
185,286 - LRK53_RS18955 0.28 +0.2
185,286 - LRK53_RS18955 0.28 -1.7
185,286 - LRK53_RS18955 0.28 -4.1
185,286 - LRK53_RS18955 0.28 -1.9
185,286 - LRK53_RS18955 0.28 -2.5
185,286 - LRK53_RS18955 0.28 -0.2
185,286 - LRK53_RS18955 0.28 -2.5
185,286 - LRK53_RS18955 0.28 +0.0
185,286 - LRK53_RS18955 0.28 -1.3
185,286 - LRK53_RS18955 0.28 -1.4
185,286 - LRK53_RS18955 0.28 -0.8
185,286 - LRK53_RS18955 0.28 -0.2
185,340 + LRK53_RS18955 0.36 -0.6
185,341 - LRK53_RS18955 0.36 -0.7
185,353 + LRK53_RS18955 0.38 -0.6
185,404 + LRK53_RS18955 0.46 -0.8
185,404 + LRK53_RS18955 0.46 -0.6
185,404 + LRK53_RS18955 0.46 -1.6
185,404 + LRK53_RS18955 0.46 -2.2
185,404 + LRK53_RS18955 0.46 -1.5
185,405 - LRK53_RS18955 0.46 -0.6
185,405 - LRK53_RS18955 0.46 -0.9
185,405 - LRK53_RS18955 0.46 +0.3
185,405 - LRK53_RS18955 0.46 -1.7
185,405 - LRK53_RS18955 0.46 -1.1
185,405 - LRK53_RS18955 0.46 -1.8
185,580 - LRK53_RS18955 0.74 +0.4
185,743 + +1.8
185,743 + -2.8
185,744 - -2.0
185,744 - +0.4
185,811 + -0.2
185,812 - -3.0
185,921 + LRK53_RS18960 0.26 -1.9
186,065 + LRK53_RS18960 0.77 -0.5
186,128 + -0.6
186,128 + -1.6
186,129 - -2.0
186,129 - -1.6
186,193 + -0.7
186,284 + LRK53_RS18965 0.11 -0.4
186,284 + LRK53_RS18965 0.11 -1.9
186,285 - LRK53_RS18965 0.11 -2.7
186,285 - LRK53_RS18965 0.11 +0.2
186,285 - LRK53_RS18965 0.11 -1.0
186,285 - LRK53_RS18965 0.11 -1.2
186,285 - LRK53_RS18965 0.11 -1.5
186,363 + LRK53_RS18965 0.22 -0.8
186,363 + LRK53_RS18965 0.22 +1.4
186,363 + LRK53_RS18965 0.22 -0.3
186,363 + LRK53_RS18965 0.22 -1.6
186,363 + LRK53_RS18965 0.22 -0.5
186,364 - LRK53_RS18965 0.22 -1.4
186,364 - LRK53_RS18965 0.22 -1.0
186,364 - LRK53_RS18965 0.22 -0.6
186,364 - LRK53_RS18965 0.22 +0.7
186,364 - LRK53_RS18965 0.22 -1.4
186,364 - LRK53_RS18965 0.22 +0.4
186,364 - LRK53_RS18965 0.22 -0.8
186,364 - LRK53_RS18965 0.22 -0.4
186,364 - LRK53_RS18965 0.22 -1.0
186,494 + LRK53_RS18965 0.41 +1.0
186,494 + LRK53_RS18965 0.41 -1.5
186,495 - LRK53_RS18965 0.41 -1.0
186,495 - LRK53_RS18965 0.41 -3.2
186,605 + LRK53_RS18965 0.57 +0.4
186,605 + LRK53_RS18965 0.57 -2.2
186,605 + LRK53_RS18965 0.57 +1.0
186,605 + LRK53_RS18965 0.57 -1.6
186,605 + LRK53_RS18965 0.57 -0.6
186,605 + LRK53_RS18965 0.57 -2.0
186,605 + LRK53_RS18965 0.57 -0.7
186,605 + LRK53_RS18965 0.57 -0.3
186,605 + LRK53_RS18965 0.57 -1.4
186,605 + LRK53_RS18965 0.57 -0.2
186,605 + LRK53_RS18965 0.57 +1.3
186,605 + LRK53_RS18965 0.57 +0.1
186,605 + LRK53_RS18965 0.57 +0.4
186,605 + LRK53_RS18965 0.57 -1.2
186,605 + LRK53_RS18965 0.57 -1.8
186,605 + LRK53_RS18965 0.57 -1.7
186,605 + LRK53_RS18965 0.57 -0.2
186,605 + LRK53_RS18965 0.57 -1.4
186,605 + LRK53_RS18965 0.57 +0.8
186,605 + LRK53_RS18965 0.57 +0.9
186,605 + LRK53_RS18965 0.57 -1.4
186,605 + LRK53_RS18965 0.57 -0.5
186,606 - LRK53_RS18965 0.57 +0.0
186,606 - LRK53_RS18965 0.57 -1.8
186,606 - LRK53_RS18965 0.57 +0.2
186,606 - LRK53_RS18965 0.57 -1.4
186,606 - LRK53_RS18965 0.57 +1.3
186,606 - LRK53_RS18965 0.57 -1.2
186,606 - LRK53_RS18965 0.57 -0.2
186,606 - LRK53_RS18965 0.57 -1.9
186,606 - LRK53_RS18965 0.57 -1.7
186,606 - LRK53_RS18965 0.57 -1.4
186,606 - LRK53_RS18965 0.57 -0.6
186,606 - LRK53_RS18965 0.57 +0.3
186,606 - LRK53_RS18965 0.57 -2.0
186,606 - LRK53_RS18965 0.57 +0.4
186,606 - LRK53_RS18965 0.57 -1.7
186,606 - LRK53_RS18965 0.57 -0.6
186,606 - LRK53_RS18965 0.57 +0.4
186,606 - LRK53_RS18965 0.57 -0.5
186,606 - LRK53_RS18965 0.57 -2.1
186,606 - LRK53_RS18965 0.57 -1.7
186,606 - LRK53_RS18965 0.57 -0.2
186,725 + LRK53_RS18965 0.74 +1.6
186,725 + LRK53_RS18965 0.74 -1.4
186,725 + LRK53_RS18965 0.74 +1.8
186,725 + LRK53_RS18965 0.74 +0.2
186,725 + LRK53_RS18965 0.74 -0.6
186,725 + LRK53_RS18965 0.74 -0.4
186,726 - LRK53_RS18965 0.74 -0.6
186,726 - LRK53_RS18965 0.74 -0.1
186,726 - LRK53_RS18965 0.74 -2.2
186,781 - LRK53_RS18965 0.82 -1.8
186,781 - LRK53_RS18965 0.82 -0.4
186,926 + -2.4
186,961 + -0.8
186,961 + -0.1
186,962 - +1.8
186,962 - -0.6
187,041 + LRK53_RS18970 0.11 -0.6
187,041 + LRK53_RS18970 0.11 -1.0
187,041 + LRK53_RS18970 0.11 +1.0
187,042 - LRK53_RS18970 0.11 -1.6
187,117 - LRK53_RS18970 0.17 -0.8

Or see this region's nucleotide sequence