Experiment: biofilm; Day1; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18290 and LRK53_RS18295 are separated by 250 nucleotides LRK53_RS18295 and LRK53_RS18300 are separated by 86 nucleotides LRK53_RS18300 and LRK53_RS18305 are separated by 2 nucleotides
LRK53_RS18290: LRK53_RS18290 - hypothetical protein, at 35,078 to 35,251
_RS18290
LRK53_RS18295: LRK53_RS18295 - hypothetical protein, at 35,502 to 36,113
_RS18295
LRK53_RS18300: LRK53_RS18300 - hypothetical protein, at 36,200 to 37,108
_RS18300
LRK53_RS18305: LRK53_RS18305 - PD-(D/E)XK nuclease family protein, at 37,111 to 38,037
_RS18305
Position (kb) 36
37
38 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 35.233 kb on + strand, within LRK53_RS18290 at 35.234 kb on - strand at 35.438 kb on + strand at 35.438 kb on + strand at 35.637 kb on + strand, within LRK53_RS18295 at 35.715 kb on + strand, within LRK53_RS18295 at 35.716 kb on - strand, within LRK53_RS18295 at 35.716 kb on - strand, within LRK53_RS18295 at 35.716 kb on - strand, within LRK53_RS18295 at 36.065 kb on + strand at 36.066 kb on - strand at 36.066 kb on - strand at 36.066 kb on - strand at 36.066 kb on - strand at 36.126 kb on + strand at 36.144 kb on + strand at 36.145 kb on - strand at 36.264 kb on - strand at 36.264 kb on - strand at 36.338 kb on + strand, within LRK53_RS18300 at 36.338 kb on + strand, within LRK53_RS18300 at 36.338 kb on + strand, within LRK53_RS18300 at 36.338 kb on + strand, within LRK53_RS18300 at 36.533 kb on + strand, within LRK53_RS18300 at 36.599 kb on + strand, within LRK53_RS18300 at 36.599 kb on + strand, within LRK53_RS18300 at 36.599 kb on + strand, within LRK53_RS18300 at 36.599 kb on + strand, within LRK53_RS18300 at 36.599 kb on + strand, within LRK53_RS18300 at 36.600 kb on - strand, within LRK53_RS18300 at 37.000 kb on + strand, within LRK53_RS18300 at 37.000 kb on + strand, within LRK53_RS18300 at 37.059 kb on - strand at 37.059 kb on - strand at 37.059 kb on - strand at 37.174 kb on + strand at 37.174 kb on + strand at 37.174 kb on + strand at 37.174 kb on + strand at 37.174 kb on + strand at 37.174 kb on + strand at 37.174 kb on + strand at 37.175 kb on - strand at 37.175 kb on - strand at 37.175 kb on - strand at 37.175 kb on - strand at 37.175 kb on - strand at 37.175 kb on - strand at 37.222 kb on + strand, within LRK53_RS18305 at 37.222 kb on + strand, within LRK53_RS18305 at 37.223 kb on - strand, within LRK53_RS18305 at 37.223 kb on - strand, within LRK53_RS18305 at 37.223 kb on - strand, within LRK53_RS18305 at 37.229 kb on - strand, within LRK53_RS18305 at 37.330 kb on + strand, within LRK53_RS18305 at 37.330 kb on + strand, within LRK53_RS18305 at 37.331 kb on - strand, within LRK53_RS18305 at 37.373 kb on - strand, within LRK53_RS18305 at 37.373 kb on - strand, within LRK53_RS18305 at 37.373 kb on - strand, within LRK53_RS18305 at 37.495 kb on + strand, within LRK53_RS18305 at 37.574 kb on - strand, within LRK53_RS18305 at 37.647 kb on + strand, within LRK53_RS18305 at 37.648 kb on - strand, within LRK53_RS18305 at 37.648 kb on - strand, within LRK53_RS18305 at 37.754 kb on + strand, within LRK53_RS18305 at 37.754 kb on + strand, within LRK53_RS18305 at 37.754 kb on + strand, within LRK53_RS18305 at 37.754 kb on + strand, within LRK53_RS18305 at 37.754 kb on + strand, within LRK53_RS18305 at 37.755 kb on - strand, within LRK53_RS18305 at 37.867 kb on + strand, within LRK53_RS18305 at 37.867 kb on + strand, within LRK53_RS18305 at 37.867 kb on + strand, within LRK53_RS18305 at 37.868 kb on - strand, within LRK53_RS18305 at 37.868 kb on - strand, within LRK53_RS18305 at 37.868 kb on - strand, within LRK53_RS18305 at 37.868 kb on - strand, within LRK53_RS18305 at 37.908 kb on + strand, within LRK53_RS18305 at 37.908 kb on + strand, within LRK53_RS18305 at 37.940 kb on - strand, within LRK53_RS18305 at 37.940 kb on - strand, within LRK53_RS18305 at 37.940 kb on - strand, within LRK53_RS18305
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; remove 35,233 + LRK53_RS18290 0.89 +2.6 35,234 - -1.9 35,438 + +0.6 35,438 + +2.6 35,637 + LRK53_RS18295 0.22 +1.1 35,715 + LRK53_RS18295 0.35 -0.9 35,716 - LRK53_RS18295 0.35 +0.4 35,716 - LRK53_RS18295 0.35 -0.5 35,716 - LRK53_RS18295 0.35 +0.6 36,065 + -0.5 36,066 - +0.0 36,066 - -0.2 36,066 - -0.4 36,066 - +0.0 36,126 + +1.8 36,144 + -0.6 36,145 - +2.5 36,264 - +0.0 36,264 - +1.7 36,338 + LRK53_RS18300 0.15 +0.5 36,338 + LRK53_RS18300 0.15 +2.1 36,338 + LRK53_RS18300 0.15 +0.2 36,338 + LRK53_RS18300 0.15 -0.3 36,533 + LRK53_RS18300 0.37 -2.2 36,599 + LRK53_RS18300 0.44 +0.3 36,599 + LRK53_RS18300 0.44 +0.2 36,599 + LRK53_RS18300 0.44 +0.1 36,599 + LRK53_RS18300 0.44 -0.6 36,599 + LRK53_RS18300 0.44 -1.0 36,600 - LRK53_RS18300 0.44 -1.2 37,000 + LRK53_RS18300 0.88 -1.5 37,000 + LRK53_RS18300 0.88 +0.2 37,059 - -1.2 37,059 - -0.6 37,059 - +0.3 37,174 + +0.2 37,174 + +0.0 37,174 + -2.6 37,174 + -2.6 37,174 + -0.8 37,174 + +0.2 37,174 + +1.2 37,175 - -1.9 37,175 - +0.2 37,175 - -1.9 37,175 - -1.0 37,175 - +0.8 37,175 - -1.5 37,222 + LRK53_RS18305 0.12 +0.7 37,222 + LRK53_RS18305 0.12 -0.6 37,223 - LRK53_RS18305 0.12 -1.3 37,223 - LRK53_RS18305 0.12 -0.3 37,223 - LRK53_RS18305 0.12 -1.1 37,229 - LRK53_RS18305 0.13 -1.9 37,330 + LRK53_RS18305 0.24 -1.6 37,330 + LRK53_RS18305 0.24 -1.8 37,331 - LRK53_RS18305 0.24 -1.5 37,373 - LRK53_RS18305 0.28 +1.8 37,373 - LRK53_RS18305 0.28 +1.0 37,373 - LRK53_RS18305 0.28 +0.0 37,495 + LRK53_RS18305 0.41 -1.5 37,574 - LRK53_RS18305 0.50 -0.1 37,647 + LRK53_RS18305 0.58 +0.3 37,648 - LRK53_RS18305 0.58 -0.0 37,648 - LRK53_RS18305 0.58 +1.9 37,754 + LRK53_RS18305 0.69 -0.6 37,754 + LRK53_RS18305 0.69 -1.3 37,754 + LRK53_RS18305 0.69 -0.8 37,754 + LRK53_RS18305 0.69 +0.0 37,754 + LRK53_RS18305 0.69 +0.5 37,755 - LRK53_RS18305 0.69 -0.6 37,867 + LRK53_RS18305 0.82 -2.0 37,867 + LRK53_RS18305 0.82 +1.2 37,867 + LRK53_RS18305 0.82 +0.8 37,868 - LRK53_RS18305 0.82 +0.3 37,868 - LRK53_RS18305 0.82 +1.3 37,868 - LRK53_RS18305 0.82 +2.0 37,868 - LRK53_RS18305 0.82 -0.2 37,908 + LRK53_RS18305 0.86 +0.4 37,908 + LRK53_RS18305 0.86 -2.1 37,940 - LRK53_RS18305 0.89 -1.3 37,940 - LRK53_RS18305 0.89 -3.0 37,940 - LRK53_RS18305 0.89 -0.3
Or see this region's nucleotide sequence