Experiment: biofilm; Day1; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS15185 and LRK53_RS15190 overlap by 4 nucleotides LRK53_RS15190 and LRK53_RS15195 are separated by 103 nucleotides LRK53_RS15195 and LRK53_RS15200 overlap by 4 nucleotides LRK53_RS15200 and LRK53_RS15205 are separated by 107 nucleotides
LRK53_RS15185: LRK53_RS15185 - methyl-accepting chemotaxis protein, at 3,314,594 to 3,315,898
_RS15185
LRK53_RS15190: LRK53_RS15190 - flagellar basal body P-ring formation protein FlgA, at 3,315,895 to 3,316,623
_RS15190
LRK53_RS15195: LRK53_RS15195 - flagellar biosynthesis anti-sigma factor FlgM, at 3,316,727 to 3,317,050
_RS15195
LRK53_RS15200: LRK53_RS15200 - flagellar protein FlgN, at 3,317,047 to 3,317,493
_RS15200
LRK53_RS15205: LRK53_RS15205 - HDOD domain-containing protein, at 3,317,601 to 3,318,884
_RS15205
Position (kb) 3316
3317
3318 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3316.013 kb on + strand, within LRK53_RS15190 at 3316.013 kb on + strand, within LRK53_RS15190 at 3316.014 kb on - strand, within LRK53_RS15190 at 3316.014 kb on - strand, within LRK53_RS15190 at 3316.048 kb on + strand, within LRK53_RS15190 at 3316.049 kb on - strand, within LRK53_RS15190 at 3316.150 kb on + strand, within LRK53_RS15190 at 3316.151 kb on - strand, within LRK53_RS15190 at 3316.151 kb on - strand, within LRK53_RS15190 at 3316.151 kb on - strand, within LRK53_RS15190 at 3316.151 kb on - strand, within LRK53_RS15190 at 3316.345 kb on + strand, within LRK53_RS15190 at 3316.345 kb on + strand, within LRK53_RS15190 at 3316.346 kb on - strand, within LRK53_RS15190 at 3316.346 kb on - strand, within LRK53_RS15190 at 3316.346 kb on - strand, within LRK53_RS15190 at 3316.346 kb on - strand, within LRK53_RS15190 at 3316.346 kb on - strand, within LRK53_RS15190 at 3316.496 kb on + strand, within LRK53_RS15190 at 3316.496 kb on + strand, within LRK53_RS15190 at 3316.696 kb on + strand at 3316.697 kb on - strand at 3316.732 kb on + strand at 3316.732 kb on + strand at 3316.732 kb on + strand at 3316.732 kb on + strand at 3316.732 kb on + strand at 3316.732 kb on + strand at 3316.732 kb on + strand at 3316.733 kb on - strand at 3316.733 kb on - strand at 3316.973 kb on + strand, within LRK53_RS15195 at 3316.973 kb on + strand, within LRK53_RS15195 at 3316.973 kb on + strand, within LRK53_RS15195 at 3316.973 kb on + strand, within LRK53_RS15195 at 3316.973 kb on + strand, within LRK53_RS15195 at 3316.973 kb on + strand, within LRK53_RS15195 at 3316.973 kb on + strand, within LRK53_RS15195 at 3316.973 kb on + strand, within LRK53_RS15195 at 3316.974 kb on - strand, within LRK53_RS15195 at 3316.974 kb on - strand, within LRK53_RS15195 at 3316.974 kb on - strand, within LRK53_RS15195 at 3316.974 kb on - strand, within LRK53_RS15195 at 3316.974 kb on - strand, within LRK53_RS15195 at 3316.974 kb on - strand, within LRK53_RS15195 at 3316.974 kb on - strand, within LRK53_RS15195 at 3316.974 kb on - strand, within LRK53_RS15195 at 3317.326 kb on + strand, within LRK53_RS15200 at 3317.327 kb on - strand, within LRK53_RS15200 at 3317.434 kb on + strand, within LRK53_RS15200 at 3317.489 kb on + strand at 3317.489 kb on + strand at 3317.490 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; remove 3,316,013 + LRK53_RS15190 0.16 +2.2 3,316,013 + LRK53_RS15190 0.16 +0.1 3,316,014 - LRK53_RS15190 0.16 +0.3 3,316,014 - LRK53_RS15190 0.16 -0.5 3,316,048 + LRK53_RS15190 0.21 -1.1 3,316,049 - LRK53_RS15190 0.21 -0.3 3,316,150 + LRK53_RS15190 0.35 -0.4 3,316,151 - LRK53_RS15190 0.35 -1.1 3,316,151 - LRK53_RS15190 0.35 -0.7 3,316,151 - LRK53_RS15190 0.35 -2.4 3,316,151 - LRK53_RS15190 0.35 +0.5 3,316,345 + LRK53_RS15190 0.62 -0.8 3,316,345 + LRK53_RS15190 0.62 +0.3 3,316,346 - LRK53_RS15190 0.62 +0.2 3,316,346 - LRK53_RS15190 0.62 -1.5 3,316,346 - LRK53_RS15190 0.62 +1.5 3,316,346 - LRK53_RS15190 0.62 -0.6 3,316,346 - LRK53_RS15190 0.62 +0.3 3,316,496 + LRK53_RS15190 0.82 -0.7 3,316,496 + LRK53_RS15190 0.82 -0.5 3,316,696 + -0.4 3,316,697 - -0.2 3,316,732 + -0.7 3,316,732 + -1.3 3,316,732 + -0.9 3,316,732 + -0.2 3,316,732 + -1.8 3,316,732 + -0.9 3,316,732 + +0.6 3,316,733 - -1.0 3,316,733 - -1.3 3,316,973 + LRK53_RS15195 0.76 -0.0 3,316,973 + LRK53_RS15195 0.76 -1.4 3,316,973 + LRK53_RS15195 0.76 +1.2 3,316,973 + LRK53_RS15195 0.76 -0.6 3,316,973 + LRK53_RS15195 0.76 -3.3 3,316,973 + LRK53_RS15195 0.76 -3.0 3,316,973 + LRK53_RS15195 0.76 -0.5 3,316,973 + LRK53_RS15195 0.76 +0.1 3,316,974 - LRK53_RS15195 0.76 +2.8 3,316,974 - LRK53_RS15195 0.76 -0.8 3,316,974 - LRK53_RS15195 0.76 -2.4 3,316,974 - LRK53_RS15195 0.76 -2.7 3,316,974 - LRK53_RS15195 0.76 -0.5 3,316,974 - LRK53_RS15195 0.76 -1.9 3,316,974 - LRK53_RS15195 0.76 +0.2 3,316,974 - LRK53_RS15195 0.76 -0.5 3,317,326 + LRK53_RS15200 0.62 -2.2 3,317,327 - LRK53_RS15200 0.63 -0.9 3,317,434 + LRK53_RS15200 0.87 -1.9 3,317,489 + +0.3 3,317,489 + -0.9 3,317,490 - -1.1
Or see this region's nucleotide sequence